Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012102.1

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Reverse (-)

959 .. 3388

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012102.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ctgccggcggaggaagtgccgccggagcttccggagcctgcgttggggattaattttgcgagagatgggatgaaccgccaagattggctgtctttgattgcagtgcatagtgattcttggttgttgtctgtgtctttctactttggtgctcgccttaaccggaatgagaggaagcgtctatttagcttgacaaatgatctgccaactgtctttgaagtcgtaactggaaggaagcccgctagagacaaacccagtgcagatagtggaagcaaatccaggaacaatgccaagagatcaactgatggacctatgaggaccaatagtacgttgctcgatgaaaattacgtggaggatggagatgagcatagtgaaactctatgtggaagctgtgggggaaattacagtgctaatgagttttggattggctgtgacatctgtgagagatggtaccatgggaagtgtgtgaagataacaccatccaaggccgagtatatccagcagtacaaatgcccttcttgctcaaagaagggaaggcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

179

Amino Acids

20.13

Weight (kDa)

6.99

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	447
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	4 cut(s)	8, 20, 76, 237
AfaI	GTAC	3 cut(s)	325, 449, 503
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	28, 186, 387
AluI	AGCT	3 cut(s)	28, 186, 387
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	1 cut(s)	483
AseI	ATTAAT	1 cut(s)	51
Asp718I	GGTACC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	305, 315
AvaII	GGWCC	2 cut(s)	305, 315
BanI	GGYRCC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	151
BccI	CCATC	5 cut(s)	59, 296, 347, 438, 484
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	2 cut(s)	305, 315
BmgT120I	GGNCC	2 cut(s)	305, 315
BmiI	GGNNCC	2 cut(s)	36, 449
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	451, 480
BsaWI	WCCGGW	2 cut(s)	31, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	229, 252
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	451, 480
BseGI	GGATG	3 cut(s)	75, 358, 476
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	229, 252
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	4 cut(s)	5, 23, 32, 160
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	196, 293
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	4 cut(s)	8, 20, 76, 237
BspANI	GGCC	1 cut(s)	485
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	36, 449
BspT107I	GGYRCC	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	229, 252
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	451, 480
BssMI	GATC	2 cut(s)	196, 293
BssT1I	CCWWGG	2 cut(s)	451, 480
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	208, 404
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	4 cut(s)	6, 39, 151, 237
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	3 cut(s)	75, 358, 476
BstKTI	GATC	2 cut(s)	199, 296
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	196, 293
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 34, 516
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	3 cut(s)	75, 358, 476
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 259, 409
Cac8I	GCNNGC	4 cut(s)	6, 39, 151, 237
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	305, 315
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	324, 448, 502
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	8 cut(s)	28, 37, 88, 186, 235, 387, 426, 485
CviKI_1	RGCY	8 cut(s)	28, 37, 88, 186, 235, 387, 426, 485
CviQI	GTAC	3 cut(s)	324, 448, 502
DpnI	GATC	2 cut(s)	198, 295
DpnII	GATC	2 cut(s)	196, 293
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	451, 480
Eco47I	GGWCC	2 cut(s)	305, 315
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	451, 480
ErhI	CCWWGG	2 cut(s)	451, 480
FaeI	CATG	1 cut(s)	455
FaiI	YATR	6 cut(s)	108, 311, 366, 379, 453, 492
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	3 cut(s)	82, 365, 463
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	4 cut(s)	5, 23, 32, 160
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	455
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	4 cut(s)	5, 23, 32, 160
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	222, 520, 522, 525
HpyCH4III	ACNGT	2 cut(s)	208, 404
HpyCH4IV	ACGT	2 cut(s)	326, 345
HpyCH4V	TGCA	3 cut(s)	101, 106, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 34, 516
HpySE526I	ACGT	2 cut(s)	326, 345
Hsp92II	CATG	1 cut(s)	455
Kpn2I	TCCGGA	1 cut(s)	31
KpnI	GGTACC	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	196, 293
LmnI	GCTCC	2 cut(s)	25, 34
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	326, 345
MaeIII	GTNAC	2 cut(s)	220, 428
MalI	GATC	2 cut(s)	198, 295
MboI	GATC	2 cut(s)	196, 293
MboII	GAAGA	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	52, 340, 397
MnlI	CCTC	4 cut(s)	4, 162, 306, 343
MroI	TCCGGA	1 cut(s)	31
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	51, 156
MspI	CCGG	4 cut(s)	5, 23, 32, 160
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	25, 34, 516
NaeI	GCCGGC	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	2 cut(s)	196, 293
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	36, 449
NmeAIII	GCCGAG	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	428
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	36, 449
PspPI	GGNCC	2 cut(s)	305, 315
RsaI	GTAC	3 cut(s)	325, 449, 503
RsaNI	GTAC	3 cut(s)	324, 448, 502
SaqAI	TTAA	2 cut(s)	51, 156
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	196, 293
Sau96I	GGNCC	2 cut(s)	305, 315
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	6 cut(s)	30, 188, 310, 329, 348, 389
SinI	GGWCC	2 cut(s)	305, 315
Sse9I	AATT	3 cut(s)	52, 340, 397
SsiI	CCGC	4 cut(s)	8, 20, 76, 237
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	2 cut(s)	451, 480
TaaI	ACNGT	2 cut(s)	208, 404
TaiI	ACGT	2 cut(s)	329, 348
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	52, 340, 397
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	51, 156
Tru9I	TTAA	2 cut(s)	51, 156
TscAI	CASTG	3 cut(s)	108, 259, 409
TseFI	GTSAC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	86, 351
TspRI	CASTG	3 cut(s)	108, 259, 409
VpaK11BI	GGWCC	2 cut(s)	305, 315
VspI	ATTAAT	1 cut(s)	51
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.