Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

26099982 .. 26102556

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G278200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAAATGGCCTCGAGTCCGCGAAACGTGGAGGAGATCTTCAAAGATTACAGTGCTCGGAGAACTGCTGTTGTCCGTGCTTTAACTTACGATGTCGATGAATTCTACGGACTCTGCGATCCAGATAAGGAGAATTTATGTCTGTATGGGCATCCAAATGAAACCTGGGAAGTGACACTTCCGGCGGAAGAAGTCCCACCCGAGCTTCCTGAGCCAGCACTTGGGATCAATTTTGCAAGAGATGGTATGAACCGCAAGGACTGGCTTTCTCTGGTTGCTGTTCACAGTGATTCTTGGCTGCTTTCTGTGGCTTTCTATTTTGGAGCACGCCTTAACCGCAATGAGAGGAAACGCCTCTTTAGTTTGATCAATGATCTGCCTACTGTCTTTGAAGTTGTGACGGAAAGGAAACCCGTTAAAGAAAAGCCCAGTGTGGATAGTGGAAGCAAATCTCGAGGCAGCACAAAGAGATCCAGCGATGGAATTGTGAAAAGCAATCCTAAGCTTCCAGACGAGAGTTTCGAGGAGGAGGATGATGAACATAGTGAAACTCTCTGTGGGAGCTGCGGCGGGAATTACAACGCAGATGAATTTTGGATCGGCTGTGACATCTGTGAGAGATGGTTCCATGGAAAATGCGTGAAGATAACACCTGCTAAGGCTGAGAACATCAAGCAATACAAATGCCCATCTTGCAGCTTGAAAAGGGGCAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

240

Amino Acids

27.12

Weight (kDa)

5.31

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccII	CGCG	1 cut(s)	22
AciI	CCGC	6 cut(s)	20, 185, 253, 337, 567, 570
AclWI	GGATC	4 cut(s)	113, 233, 465, 605
AcsI	RAATTY	3 cut(s)	101, 133, 590
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	43, 392, 703
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	205, 505, 564, 699
AluI	AGCT	4 cut(s)	205, 505, 564, 699
Alw21I	GWGCWC	2 cut(s)	58, 328
AlwI	GGATC	4 cut(s)	113, 233, 465, 605
Ama87I	CYCGRG	3 cut(s)	13, 200, 453
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	4 cut(s)	298, 459, 564, 696
ApoI	RAATTY	3 cut(s)	101, 133, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AvaI	CYCGRG	3 cut(s)	13, 200, 453
Bbv12I	GWGCWC	2 cut(s)	58, 328
BbvI	GCAGC	4 cut(s)	285, 471, 551, 708
BccI	CCATC	4 cut(s)	236, 473, 615, 697
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	5 cut(s)	299, 460, 565, 568, 697
BlsI	GCNGC	5 cut(s)	300, 461, 566, 569, 698
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	3 cut(s)	13, 200, 453
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	423
Bpu10I	CCTNAGC	3 cut(s)	210, 501, 657
BsaJI	CCNNGG	2 cut(s)	165, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	266, 429
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	165, 628
BseGI	GGATG	2 cut(s)	151, 538
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	201, 654
BseNI	ACTGG	2 cut(s)	266, 429
BseRI	GAGGAG	3 cut(s)	47, 539, 542
BseXI	GCAGC	4 cut(s)	285, 471, 551, 708
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	58, 328
BsiHKCI	CYCGRG	3 cut(s)	13, 200, 453
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	11
BsoBI	CYCGRG	3 cut(s)	13, 200, 453
Bsp1286I	GDGCHC	2 cut(s)	58, 328
Bsp143I	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	6 cut(s)	20, 185, 253, 337, 567, 570
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	202, 655
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	626
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	4 cut(s)	113, 233, 465, 605
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	266, 429
BssECI	CCNNGG	2 cut(s)	165, 628
BssMI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	53, 287, 385
BstC8I	GCNNGC	3 cut(s)	216, 328, 713
BstDEI	CTNAG	4 cut(s)	210, 501, 657, 663
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	2 cut(s)	151, 538
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	7 cut(s)	39, 121, 228, 369, 376, 473, 600
BstMBI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 336, 693
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	4 cut(s)	285, 471, 551, 708
BstX2I	RGATCY	2 cut(s)	36, 470
BstYI	RGATCY	2 cut(s)	36, 470
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	628
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	151, 538
BtsIMutI	CAGTG	3 cut(s)	58, 292, 436
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	216, 328, 713
CviAII	CATG	1 cut(s)	629
DdeI	CTNAG	4 cut(s)	210, 501, 657, 663
DpnI	GATC	7 cut(s)	38, 120, 227, 368, 375, 472, 599
DpnII	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	628
Eco88I	CYCGRG	3 cut(s)	13, 200, 453
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	1 cut(s)	632
FaiI	YATR	5 cut(s)	139, 147, 248, 543, 630
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	628
FauI	CCCGC	1 cut(s)	563
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	299, 460, 565, 568, 697
FokI	GGATG	2 cut(s)	138, 545
Fsp4HI	GCNGC	5 cut(s)	299, 460, 565, 568, 697
GluI	GCNGC	5 cut(s)	299, 460, 565, 568, 697
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	1 cut(s)	632
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	3 cut(s)	16, 111, 290
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	4 cut(s)	122, 209, 453, 509
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4III	ACNGT	3 cut(s)	53, 287, 385
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	236, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 336, 693
HpyF3I	CTNAG	4 cut(s)	210, 501, 657, 663
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	632
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
LmnI	GCTCC	2 cut(s)	323, 561
Lsp1109I	GCAGC	4 cut(s)	285, 471, 551, 708
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	172, 397, 605
MalI	GATC	7 cut(s)	38, 120, 227, 368, 375, 472, 599
MboI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
MboII	GAAGA	3 cut(s)	31, 200, 655
MflI	RGATCY	2 cut(s)	36, 470
MhlI	GDGCHC	2 cut(s)	58, 328
MluCI	AATT	6 cut(s)	101, 133, 229, 483, 574, 590
MlyI	GAGTC	2 cut(s)	25, 105
MnlI	CCTC	8 cut(s)	22, 25, 339, 365, 449, 517, 520, 523
MseI	TTAA	3 cut(s)	83, 333, 417
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	211, 336, 693
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	1 cut(s)	626
NmuCI	GTSAC	3 cut(s)	172, 397, 605
PaeR7I	CTCGAG	2 cut(s)	13, 453
PaqCI	CACCTGC	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 519
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	300, 461, 566, 569, 698
PleI	GAGTC	2 cut(s)	24, 105
PpsI	GAGTC	2 cut(s)	24, 105
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	626
PspXI	VCTCGAGB	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	36, 470
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	83, 333, 417
SatI	GCNGC	5 cut(s)	299, 460, 565, 568, 697
Sau3AI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
SchI	GAGTC	2 cut(s)	25, 105
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	58, 328
SetI	ASST	7 cut(s)	30, 167, 207, 507, 566, 655, 701
SfaNI	GCATC	1 cut(s)	160
Sfr274I	CTCGAG	2 cut(s)	13, 453
SlaI	CTCGAG	2 cut(s)	13, 453
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	13, 453
SmoI	CTYRAG	2 cut(s)	13, 453
Sse9I	AATT	6 cut(s)	101, 133, 229, 483, 574, 590
SsiI	CCGC	6 cut(s)	20, 185, 253, 337, 567, 570
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	3 cut(s)	53, 287, 385
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	14, 96, 454, 522
TasI	AATT	6 cut(s)	101, 133, 229, 483, 574, 590
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	83, 333, 417
Tru9I	TTAA	3 cut(s)	83, 333, 417
TscAI	CASTG	3 cut(s)	58, 292, 436
TseFI	GTSAC	3 cut(s)	172, 397, 605
TseI	GCWGC	4 cut(s)	298, 459, 564, 696
Tsp45I	GTSAC	3 cut(s)	172, 397, 605
TspDTI	ATGAA	5 cut(s)	114, 174, 263, 552, 603
TspGWI	ACGGA	3 cut(s)	65, 123, 416
TspRI	CASTG	3 cut(s)	58, 292, 436
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	3 cut(s)	101, 133, 590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XhoI	CTCGAG	2 cut(s)	13, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.