Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

6324632 .. 6325866

Gene Structure 1235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATTTCGTCTCTCTCAGCTTCTTCTTCATTGGTTTCTTCTTTCGTCGCCGTTAAAGCGACTCCGGTCACCGGACCTCTGATTCCCCGTCGCGATCTTCTTTCTATTCGTATCAGAGCTAGCTCGAATCAGAATAGTTCTGGTTATTGTTTTCCAGAAAAGTTTAAATCTTTTGCCAAATCAGCGATTCTCATCGGTGCTGCTGTTTCAATGACCGGAAAGTTTTCAACTTTACCGGTTAAAGCCGAGTCTCCGGTTACGACTATCGAAAAGACCTACGAGGAAGTGAAAGAAGAGAAACTGTCTGAGATCACGCCATTATCTGAGCTTTTGGATTCCACTCCTGAGGCCGTCGAGACGCTGAGATCACTCCTGCAGCAGAAGCTAGAGAAGGGAGAAGATGAAGAAGCTCTTAAGCTATTAGAGAGACTAGTAGCTGCACAACCAGAAGAAACAGAGTGGAAGTTCTTAATGGCGAGGCTGTTAGGCGAAATGGGTCGTCCCGAAAACGCACGCCAGATGTTCGAGGAAATTCTCCAAAGAAACCCACTTTCGTTTGAGGCTTTATTCGAGAATGCATTGCTCATGGACAGGTCCGGGGAAGGAAATGCAGTGCTGCAGAGGCTAGAAGATGCTTTAGCTGTAGCTGAGGCTGAGTATTTGGTGAAGGAAGCGAGAGATGTGAGACTGATCATTGCGCAGATACATTTCTTGCAGAAGAATGTGGATGAAGCATTGAAGAGCTACGAGCAGCTGACGAAAGAGGATCCTAAGGATTTCAGACCGTATTTCTGTCGAGGTATGATCTATAGCTTGCTTGACAAGAACGTTGAAGCTAAGGAACAGTTTGCTAAGTACAGAGAGCTCTCTCCAAAGAAATTTGAAGTAGAAGGGTACTTGAGGACTCCATTGTCTAAAATGAAGCTTTTTGGTGGTAGTGAGGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

316

Amino Acids

35.63

Weight (kDa)

5.24

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	910
Acc16I	TGCGCA	1 cut(s)	699
AccII	CGCG	1 cut(s)	93
AclI	AACGTT	1 cut(s)	828
AclWI	GGATC	2 cut(s)	761, 774
AcsI	RAATTY	2 cut(s)	531, 878
AfaI	GTAC	2 cut(s)	857, 896
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	413
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	210, 228, 739, 833, 884
AhlI	ACTAGT	1 cut(s)	430
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	5 cut(s)	15, 255, 350, 421, 679
AlwI	GGATC	2 cut(s)	761, 774
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	5 cut(s)	200, 376, 437, 616, 751
ApoI	RAATTY	2 cut(s)	531, 878
AsiGI	ACCGGT	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	2 cut(s)	74, 594
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	61, 676
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	74, 594
AxyI	CCTNAGG	2 cut(s)	345, 771
BamHI	GGATCC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	867
Bbv12I	GWGCWC	1 cut(s)	867
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	187, 388, 424, 603, 763
BceAI	ACGGC	2 cut(s)	35, 335
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	5 cut(s)	15, 255, 350, 421, 679
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	4 cut(s)	120, 386, 431, 626
BfmI	CTRYAG	4 cut(s)	374, 617, 642, 808
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	5 cut(s)	201, 377, 438, 617, 752
BlsI	GCNGC	5 cut(s)	202, 378, 439, 618, 753
Bme1390I	CCNGG	1 cut(s)	598
Bme18I	GGWCC	2 cut(s)	74, 594
BmgT120I	GGNCC	2 cut(s)	74, 594
BmiI	GGNNCC	1 cut(s)	768
BmrFI	CCNGG	1 cut(s)	598
BmsI	GCATC	1 cut(s)	622
BmtI	GCTAGC	1 cut(s)	123
BoxI	GACNNNNGTC	1 cut(s)	65
Bpu10I	CCTNAGC	2 cut(s)	648, 837
BpuEI	CTTGAG	1 cut(s)	919
BpuMI	CCSGG	1 cut(s)	598
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	5 cut(s)	64, 71, 215, 235, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	235
Bse21I	CCTNAGG	2 cut(s)	345, 771
Bse3DI	GCAATG	2 cut(s)	578, 693
Bse8I	GATNNNNATC	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	733
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	2 cut(s)	578, 693
BseMII	CTCAG	7 cut(s)	30, 297, 315, 336, 353, 639, 645
BseXI	GCAGC	5 cut(s)	187, 388, 424, 603, 763
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	350
BshTI	ACCGGT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	867
BsiSI	CCGG	6 cut(s)	65, 72, 216, 236, 254, 597
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	5 cut(s)	15, 255, 350, 421, 679
BsmBI	CGTCTC	2 cut(s)	15, 350
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp143I	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
Bsp68I	TCGCGA	1 cut(s)	93
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	7 cut(s)	29, 298, 316, 337, 354, 640, 646
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	768
BspMAI	CTGCAG	2 cut(s)	378, 621
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	761, 774
BspQI	GCTCTTC	1 cut(s)	734
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	578, 693
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
Bst4CI	ACNGT	3 cut(s)	303, 786, 846
Bst6I	CTCTTC	2 cut(s)	288, 734
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	121, 514, 815
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	6 cut(s)	97, 312, 368, 693, 769, 807
BstMAI	GTCTC	5 cut(s)	15, 255, 350, 421, 679
BstMBI	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 182, 382, 622
BstPAI	GACNNNNGTC	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	596
BstSFI	CTRYAG	4 cut(s)	374, 617, 642, 808
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	5 cut(s)	187, 388, 424, 603, 763
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
Bsu36I	CCTNAGG	2 cut(s)	345, 771
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
BtuMI	TCGCGA	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	121, 514, 815
CfoI	GCGC	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	74, 594
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	856, 895
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	586
CviQI	GTAC	2 cut(s)	856, 895
DpnI	GATC	6 cut(s)	96, 311, 367, 692, 768, 806
DpnII	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
DraI	TTTAAA	1 cut(s)	166
DrdI	GACNNNNNNGTC	1 cut(s)	910
DseDI	GACNNNNNNGTC	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	288, 734
EarI	CTCTTC	2 cut(s)	288, 734
Ecl136II	GAGCTC	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	867
Eco47I	GGWCC	2 cut(s)	74, 594
Eco53kI	GAGCTC	1 cut(s)	865
Eco81I	CCTNAGG	2 cut(s)	345, 771
Eco91I	GGTNACC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	865
EcoO65I	GGTNACC	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	867
Esp3I	CGTCTC	2 cut(s)	15, 350
FaeI	CATG	1 cut(s)	589
FaiI	YATR	3 cut(s)	587, 803, 810
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	201, 377, 438, 617, 752
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	867
Fsp4HI	GCNGC	5 cut(s)	201, 377, 438, 617, 752
FspBI	CTAG	4 cut(s)	120, 386, 431, 626
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	5 cut(s)	201, 377, 438, 617, 752
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	6 cut(s)	65, 72, 216, 236, 254, 597
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	1 cut(s)	589
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	7 cut(s)	61, 82, 127, 187, 248, 335, 904
HpaII	CCGG	6 cut(s)	65, 72, 216, 236, 254, 597
HphI	GGTGA	2 cut(s)	61, 676
Hpy188I	TCNGA	6 cut(s)	81, 116, 132, 307, 325, 782
Hpy188III	TCNNGA	6 cut(s)	92, 155, 344, 355, 503, 571
Hpy99I	CGWCG	3 cut(s)	50, 93, 356
HpyAV	CCTTC	4 cut(s)	385, 596, 661, 884
HpyCH4III	ACNGT	3 cut(s)	303, 786, 846
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	6 cut(s)	376, 440, 578, 611, 619, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 182, 382, 622
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	1 cut(s)	589
HspAI	GCGC	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
LguI	GCTCTTC	1 cut(s)	734
Lsp1109I	GCAGC	5 cut(s)	187, 388, 424, 603, 763
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	4 cut(s)	120, 386, 431, 626
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	2 cut(s)	67, 256
MalI	GATC	6 cut(s)	96, 311, 367, 692, 768, 806
MboI	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	1 cut(s)	867
MluCI	AATT	2 cut(s)	531, 878
MlyI	GAGTC	3 cut(s)	55, 257, 898
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	223
MseI	TTAA	5 cut(s)	54, 165, 240, 414, 470
MspA1I	CMGCKG	1 cut(s)	754
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	6 cut(s)	65, 72, 216, 236, 254, 597
MspR9I	CCNGG	1 cut(s)	598
Mva1269I	GAATGC	1 cut(s)	580
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	56, 182, 382, 622
NciI	CCSGG	1 cut(s)	598
NdeII	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	1 cut(s)	768
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	93
NsbI	TGCGCA	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	580
PciSI	GCTCTTC	1 cut(s)	734
PctI	GAATGC	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	223
PfeI	GAWTC	4 cut(s)	82, 127, 187, 335
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	5 cut(s)	202, 378, 439, 618, 753
PleI	GAGTC	3 cut(s)	55, 256, 898
PpsI	GAGTC	3 cut(s)	55, 256, 898
PshAI	GACNNNNGTC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	867
Psp1406I	AACGTT	1 cut(s)	828
PspEI	GGTNACC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	2 cut(s)	74, 594
PstI	CTGCAG	2 cut(s)	378, 621
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	754
RruI	TCGCGA	1 cut(s)	93
RsaI	GTAC	2 cut(s)	857, 896
RsaNI	GTAC	2 cut(s)	856, 895
SacI	GAGCTC	1 cut(s)	867
SapI	GCTCTTC	1 cut(s)	734
SaqAI	TTAA	5 cut(s)	54, 165, 240, 414, 470
SatI	GCNGC	5 cut(s)	201, 377, 438, 617, 752
Sau3AI	GATC	6 cut(s)	94, 309, 365, 690, 766, 804
Sau96I	GGNCC	2 cut(s)	74, 594
SchI	GAGTC	3 cut(s)	55, 257, 898
ScrFI	CCNGG	1 cut(s)	598
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	4 cut(s)	374, 617, 642, 808
SinI	GGWCC	2 cut(s)	74, 594
SmlI	CTYRAG	2 cut(s)	413, 898
SmoI	CTYRAG	2 cut(s)	413, 898
SpeI	ACTAGT	1 cut(s)	430
Sse9I	AATT	2 cut(s)	531, 878
SspMI	CTAG	4 cut(s)	120, 386, 431, 626
SstI	GAGCTC	1 cut(s)	867
StyD4I	CCNGG	1 cut(s)	596
TaaI	ACNGT	3 cut(s)	303, 786, 846
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	6 cut(s)	125, 267, 354, 525, 570, 796
TasI	AATT	2 cut(s)	531, 878
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	4 cut(s)	82, 127, 187, 335
Tru1I	TTAA	5 cut(s)	54, 165, 240, 414, 470
Tru9I	TTAA	5 cut(s)	54, 165, 240, 414, 470
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	5 cut(s)	200, 376, 437, 616, 751
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	18, 417, 744, 935
TspRI	CASTG	1 cut(s)	618
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	74, 594
XapI	RAATTY	2 cut(s)	531, 878
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	4 cut(s)	120, 386, 431, 626
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.