Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

32151023 .. 32152194

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAACTCCTCCTCCACTCTAGCCTCCTCCTCATCGTCCTCGTCTCTCTTTCATTTCAAACTCACTCCCTCTAAACCAACTCAACCTTTTCTTCTCCGTTTTGCCCCTCCACATTCCCACAATTCGCACCATGCCCCTGCCCTCAAAATCACAGCTTCCTCAACCAACCACAACACCCTCCTCCCAAGCAACGGCGGCCACAACTCAAACCCGATTCTCCAAAATCTCAAACATTATGCCAAAGCTGCAATTCTCATTGGCGTCGCTGCCACCATGTTCACCAAGTCCTCAACTTTGCTCGCCAGAGCCGAACCTCAGCCTACATTGACCGAACAAGCCCCAACCCAGGTCTCGGATGACGAGAATCAATCCTCATCGCCCTTGTCCGACTTCCTAGGCTCCAATTCGGAAGCCATCGAAGCCTTGAAATCGCTTCTGCAGCAGAAGCTCGAAAACGGCGAGGACGGTGAAGCGCTAAAGATCCTGCAGCGCTTGGCCTCGGCGCAGCCCTCGGCGACCGAGTGGAAGTTCATGATGGCTAGGGTGCTCTCCGAAATGGGCGAAAACGAAAACGCCCGCCAAGTGTTCGAGGAAATACTCGCGGCGGATCCTTTGTCCTTCGAGGCGTTGTTCGAGAACGCCCTGCTGATGGACCGCAGCGGCGAGGGCGAGGCGGTGATGAAGCGATTGGAGGACGCCTTGCAGATTGCGGAGGAGGAGAACAAAGCAAAGGAGGCTCGCGACGTTAAATTGATAATGGCACAAATTCAGTTCCTTCAGAAGAATGTGGAGGACGCTTTGAATAGCTATAACGAATTGGCAAAGGAGGACCCCAAAGACTTCAGGCCCTACTTTTGCCGCGGCATGATTTACAGTTTGCTTGACAGGAATGCAGAGGCGCGAGAGCAGTTTGAGAAGTACCGCCAGCTTTCGCCGAAGAAGTTCGAGGTGGATGGCTACTTGAGGACGCCATTGTCGCGAGTCAAGCTATTTGGGAACGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

337

Amino Acids

37.39

Weight (kDa)

5.5

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	973
AccII	CGCG	5 cut(s)	602, 741, 861, 901, 979
AclWI	GGATC	3 cut(s)	475, 602, 615
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	765
AcuI	CTGAAG	2 cut(s)	761, 826
AcyI	GRCGYC	3 cut(s)	261, 696, 968
AfaI	GTAC	1 cut(s)	920
AfeI	AGCGCT	2 cut(s)	474, 491
AfiI	CCNNNNNNNGG	4 cut(s)	191, 346, 352, 649
AgsI	TTSAA	3 cut(s)	58, 427, 802
AjnI	CCWGG	1 cut(s)	345
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	6 cut(s)	155, 245, 448, 807, 928, 988
AluI	AGCT	6 cut(s)	155, 245, 448, 807, 928, 988
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	48, 355
AlwI	GGATC	3 cut(s)	475, 602, 615
Aor51HI	AGCGCT	2 cut(s)	474, 491
AoxI	GGCC	3 cut(s)	196, 495, 845
ApeKI	GCWGC	6 cut(s)	245, 266, 439, 487, 505, 657
ApoI	RAATTY	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	941
AspA2I	CCTAGG	1 cut(s)	394
AspLEI	GCGC	4 cut(s)	475, 492, 505, 901
AspS9I	GGNCC	3 cut(s)	652, 829, 846
AsuHPI	GGTGA	3 cut(s)	271, 479, 688
AvaII	GGWCC	2 cut(s)	652, 829
AvrII	CCTAGG	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	6 cut(s)	232, 253, 451, 499, 517, 669
BccI	CCATC	4 cut(s)	422, 529, 643, 947
BceAI	ACGGC	2 cut(s)	208, 472
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	48, 355
BfaI	CTAG	3 cut(s)	20, 395, 540
BfmI	CTRYAG	2 cut(s)	437, 485
BfoI	RGCGCY	2 cut(s)	476, 493
BlnI	CCTAGG	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	2 cut(s)	652, 829
BmgT120I	GGNCC	3 cut(s)	652, 829, 846
BmiI	GGNNCC	3 cut(s)	400, 609, 831
BmrFI	CCNGG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	982
BsaHI	GRCGYC	3 cut(s)	261, 696, 968
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	5 cut(s)	345, 394, 498, 510, 859
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 346, 352, 649
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	5 cut(s)	345, 394, 498, 510, 859
BseGI	GGATG	2 cut(s)	361, 958
BseLI	CCNNNNNNNGG	4 cut(s)	191, 346, 352, 649
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	5 cut(s)	16, 19, 170, 728, 731
BseXI	GCAGC	6 cut(s)	232, 253, 451, 499, 517, 669
Bsh1236I	CGCG	5 cut(s)	602, 741, 861, 901, 979
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	198, 497, 847
BsiEI	CGRYCG	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	549
BslI	CCNNNNNNNGG	4 cut(s)	191, 346, 352, 649
BsmAI	GTCTC	2 cut(s)	48, 355
BsmBI	CGTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	3 cut(s)	198, 497, 847
Bso31I	GGTCTC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	480, 607
Bsp68I	TCGCGA	2 cut(s)	741, 979
BspANI	GGCC	3 cut(s)	198, 497, 847
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	5 cut(s)	602, 741, 861, 901, 979
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	3 cut(s)	400, 609, 831
BspMAI	CTGCAG	2 cut(s)	441, 489
BspPI	GGATC	3 cut(s)	475, 602, 615
BspTNI	GGTCTC	1 cut(s)	355
BssECI	CCNNGG	5 cut(s)	345, 394, 498, 510, 859
BssMI	GATC	2 cut(s)	480, 607
BssNI	GRCGYC	3 cut(s)	261, 696, 968
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	467, 875
BstACI	GRCGYC	3 cut(s)	261, 696, 968
BstC8I	GCNNGC	4 cut(s)	300, 577, 739, 926
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	859
BstF5I	GGATG	2 cut(s)	361, 958
BstFNI	CGCG	5 cut(s)	602, 741, 861, 901, 979
BstH2I	RGCGCY	2 cut(s)	476, 493
BstHHI	GCGC	4 cut(s)	475, 492, 505, 901
BstKTI	GATC	2 cut(s)	483, 610
BstMAI	GTCTC	2 cut(s)	48, 355
BstMBI	GATC	2 cut(s)	480, 607
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	9 cut(s)	195, 245, 419, 439, 445, 666, 734, 976, 985
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	2 cut(s)	437, 485
BstUI	CGCG	5 cut(s)	602, 741, 861, 901, 979
BstV1I	GCAGC	6 cut(s)	232, 253, 451, 499, 517, 669
BstX2I	RGATCY	2 cut(s)	480, 607
BstYI	RGATCY	2 cut(s)	480, 607
BsuRI	GGCC	3 cut(s)	198, 497, 847
BtgI	CCRYGG	1 cut(s)	859
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	361, 958
BtuMI	TCGCGA	2 cut(s)	741, 979
Cac8I	GCNNGC	4 cut(s)	300, 577, 739, 926
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	4 cut(s)	475, 492, 505, 901
Cfr13I	GGNCC	3 cut(s)	652, 829, 846
Cfr42I	CCGCGG	1 cut(s)	862
CseI	GACGC	4 cut(s)	250, 704, 803, 976
Csp6I	GTAC	1 cut(s)	919
CviAII	CATG	4 cut(s)	131, 274, 532, 865
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	482, 609
DpnII	GATC	2 cut(s)	480, 607
DrdI	GACNNNNNNGTC	1 cut(s)	973
DseDI	GACNNNNNNGTC	1 cut(s)	973
EaeI	YGGCCR	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	652, 829
Eco47III	AGCGCT	2 cut(s)	474, 491
Eco57I	CTGAAG	2 cut(s)	761, 826
EcoO109I	RGGNCCY	2 cut(s)	829, 846
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	4 cut(s)	134, 277, 535, 868
FaiI	YATR	6 cut(s)	132, 237, 275, 533, 810, 866
FatI	CATG	4 cut(s)	130, 273, 531, 864
FauI	CCCGC	1 cut(s)	584
FokI	GGATG	2 cut(s)	368, 965
FspBI	CTAG	3 cut(s)	20, 395, 540
GlaI	GCGC	4 cut(s)	474, 491, 504, 900
HaeII	RGCGCY	2 cut(s)	476, 493
HaeIII	GGCC	3 cut(s)	198, 497, 847
HgaI	GACGC	4 cut(s)	250, 704, 803, 976
HhaI	GCGC	4 cut(s)	475, 492, 505, 901
Hin1I	GRCGYC	3 cut(s)	261, 696, 968
Hin1II	CATG	4 cut(s)	134, 277, 535, 868
Hin6I	GCGC	4 cut(s)	473, 490, 503, 899
HinP1I	GCGC	4 cut(s)	473, 490, 503, 899
HinfI	GANTC	3 cut(s)	214, 364, 981
HphI	GGTGA	3 cut(s)	271, 479, 688
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	5 cut(s)	355, 388, 409, 553, 780
Hpy188III	TCNNGA	4 cut(s)	532, 634, 740, 978
Hpy8I	GTNNAC	1 cut(s)	279
Hpy99I	CGWCG	2 cut(s)	266, 746
HpyAV	CCTTC	2 cut(s)	628, 785
HpyCH4III	ACNGT	2 cut(s)	467, 875
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	5 cut(s)	248, 439, 487, 703, 893
HpyF10VI	GCNNNNNNNGC	9 cut(s)	195, 245, 419, 439, 445, 666, 734, 976, 985
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	744
Hsp92I	GRCGYC	3 cut(s)	261, 696, 968
Hsp92II	CATG	4 cut(s)	134, 277, 535, 868
HspAI	GCGC	4 cut(s)	473, 490, 503, 899
KspI	CCGCGG	1 cut(s)	862
Kzo9I	GATC	2 cut(s)	480, 607
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	9 cut(s)	150, 316, 332, 359, 497, 656, 829, 871, 938
Lsp1109I	GCAGC	6 cut(s)	232, 253, 451, 499, 517, 669
MaeI	CTAG	3 cut(s)	20, 395, 540
MaeII	ACGT	1 cut(s)	744
MalI	GATC	2 cut(s)	482, 609
MboI	GATC	2 cut(s)	480, 607
MboII	GAAGA	3 cut(s)	83, 793, 949
MflI	RGATCY	2 cut(s)	480, 607
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	7 cut(s)	121, 249, 403, 749, 765, 815, 1006
MlyI	GAGTC	1 cut(s)	990
MmeI	TCCRAC	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	941
MseI	TTAA	1 cut(s)	747
MspA1I	CMGCKG	2 cut(s)	660, 861
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	5 cut(s)	602, 741, 861, 901, 979
MwoI	GCNNNNNNNGC	9 cut(s)	195, 245, 419, 439, 445, 666, 734, 976, 985
NdeII	GATC	2 cut(s)	480, 607
NlaIII	CATG	4 cut(s)	134, 277, 535, 868
NlaIV	GGNNCC	3 cut(s)	400, 609, 831
NmeAIII	GCCGAG	2 cut(s)	479, 491
NruI	TCGCGA	2 cut(s)	741, 979
PagI	TCATGA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 456
PctI	GAATGC	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	941
PfeI	GAWTC	2 cut(s)	214, 364
PleI	GAGTC	1 cut(s)	989
PpsI	GAGTC	1 cut(s)	989
PpuMI	RGGWCCY	1 cut(s)	829
Psp5II	RGGWCCY	1 cut(s)	829
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	400, 609, 831
PspPI	GGNCC	3 cut(s)	652, 829, 846
PspPPI	RGGWCCY	1 cut(s)	829
PstI	CTGCAG	2 cut(s)	441, 489
PsuI	RGATCY	2 cut(s)	480, 607
RruI	TCGCGA	2 cut(s)	741, 979
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
SacII	CCGCGG	1 cut(s)	862
SaqAI	TTAA	1 cut(s)	747
Sau3AI	GATC	2 cut(s)	480, 607
Sau96I	GGNCC	3 cut(s)	652, 829, 846
SchI	GAGTC	1 cut(s)	990
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	549
SfcI	CTRYAG	2 cut(s)	437, 485
Sfr303I	CCGCGG	1 cut(s)	862
SgrBI	CCGCGG	1 cut(s)	862
SinI	GGWCC	2 cut(s)	652, 829
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
Sse9I	AATT	7 cut(s)	121, 249, 403, 749, 765, 815, 1006
SspMI	CTAG	3 cut(s)	20, 395, 540
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	467, 875
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	6 cut(s)	417, 450, 588, 621, 633, 945
TaqII	GACCGA	2 cut(s)	344, 533
TasI	AATT	7 cut(s)	121, 249, 403, 749, 765, 815, 1006
TauI	GCSGC	5 cut(s)	198, 605, 663, 861, 864
TfiI	GAWTC	2 cut(s)	214, 364
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TseI	GCWGC	6 cut(s)	245, 266, 439, 487, 505, 657
TspDTI	ATGAA	4 cut(s)	17, 41, 520, 695
TspGWI	ACGGA	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	652, 829
XapI	RAATTY	1 cut(s)	765
XmaJI	CCTAGG	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	941
XspI	CTAG	3 cut(s)	20, 395, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.