Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Forward (+)

893163 .. 893933

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTCCGTCTTTCATTATTCTCCGCGAAAGTATCAAACTGTTCATATTGGGTAAGGCGAAGACTTACCCAAGACAAATGCTTACTCGCTAAGCTTCCACTTCGCCTTACCCAAGACAAAAGCTTACTCACTAAGCTTCCACAAGTCTTCCAAACTCCTTGCCCGGGCCGAGCCACCCCCGCCGGCCACATTGACCGAAGAAGAAGCAGCTCCTACCCAGGGCCAAGCCGTGATCAGGTGGCGGAGGAGGAGAACAAGGCCAAGGAGGCCAGGGATGTGAAGCCGATAATGGCGCAGATACAGTTCCTGCAGAAGAATGTGGAGGATGTGTTGAGTAGCTTCAATGAGTTGGTCAAGGAGGATCCCAAAGACTTCAGGCCTTATTTTTGTAGAGGAATGATTTACAGCTTGCTGGAGAGGAATGAAGAGGCCAAGGAGCGGTTTGAGAAGTACCGGCAGCTTTCGCCGAAGAAGTTTGAGGTGGATGGCTACTTGATGAAGCCATTGTCGAGAATCAAGCTTTTCGGGAGCGATGAGAATTGTGCCAAAAAGAGGATACTGTGCGTTCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

192

Amino Acids

22.28

Weight (kDa)

9.6

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	439
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 180, 242, 439
AclWI	GGATC	2 cut(s)	356, 369
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	358
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	5 cut(s)	164, 219, 235, 438, 552
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	217, 269
AluBI	AGCT	8 cut(s)	94, 123, 136, 210, 339, 408, 460, 520
AluI	AGCT	8 cut(s)	94, 123, 136, 210, 339, 408, 460, 520
AlwI	GGATC	2 cut(s)	356, 369
AlwNI	CAGNNNCTG	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	7 cut(s)	166, 184, 221, 258, 267, 377, 429
ApeKI	GCWGC	2 cut(s)	207, 457
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	166, 221
AsuC2I	CCSGG	2 cut(s)	164, 165
AvaI	CYCGRG	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	361
BbsI	GAAGAC	2 cut(s)	67, 139
BbvI	GCAGC	2 cut(s)	219, 469
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	2 cut(s)	219, 271
BciVI	GTATCC	1 cut(s)	549
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	164, 165
BfmI	CTRYAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	549
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	208, 458
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	2 cut(s)	209, 459
Bme1390I	CCNGG	4 cut(s)	164, 165, 219, 271
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	166, 221
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	4 cut(s)	164, 165, 219, 271
BpiI	GAAGAC	2 cut(s)	67, 139
BpmI	CTGGAG	1 cut(s)	434
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	164, 165
BsaJI	CCNNGG	6 cut(s)	163, 217, 218, 261, 270, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 219, 235, 438, 552
Bse118I	RCCGGY	2 cut(s)	182, 453
BseBI	CCWGG	2 cut(s)	219, 271
BseDI	CCNNGG	6 cut(s)	163, 217, 218, 261, 270, 432
BseGI	GGATG	3 cut(s)	280, 331, 490
BseLI	CCNNNNNNNGG	5 cut(s)	164, 219, 235, 438, 552
BseRI	GAGGAG	2 cut(s)	260, 263
BseXI	GCAGC	2 cut(s)	219, 469
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	7 cut(s)	168, 186, 223, 260, 269, 379, 431
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	164, 183, 454
BslI	CCNNNNNNNGG	5 cut(s)	164, 219, 235, 438, 552
BsnI	GGCC	7 cut(s)	168, 186, 223, 260, 269, 379, 431
BsoBI	CYCGRG	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	232, 361
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	4 cut(s)	24, 180, 242, 439
BspANI	GGCC	7 cut(s)	168, 186, 223, 260, 269, 379, 431
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	356, 369
BsrBI	CCGCTC	1 cut(s)	439
BsrFI	RCCGGY	2 cut(s)	182, 453
BssAI	RCCGGY	2 cut(s)	182, 453
BssECI	CCNNGG	6 cut(s)	163, 217, 218, 261, 270, 432
BssMI	GATC	2 cut(s)	232, 361
BssT1I	CCWWGG	2 cut(s)	261, 432
Bst2UI	CCWGG	2 cut(s)	219, 271
Bst4CI	ACNGT	3 cut(s)	41, 303, 561
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	184, 410
BstDEI	CTNAG	2 cut(s)	90, 132
BstF5I	GGATG	3 cut(s)	280, 331, 490
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	235, 364
BstMBI	GATC	2 cut(s)	232, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 266, 463
BstNI	CCWGG	2 cut(s)	219, 271
BstSCI	CCNGG	4 cut(s)	162, 163, 217, 269
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	219, 469
BstV2I	GAAGAC	2 cut(s)	67, 139
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	7 cut(s)	168, 186, 223, 260, 269, 379, 431
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	280, 331, 490
Cac8I	GCNNGC	2 cut(s)	184, 410
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	2 cut(s)	182, 453
Cfr13I	GGNCC	2 cut(s)	166, 221
Cfr9I	CCCGGG	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	451
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	90, 132
DpnI	GATC	2 cut(s)	234, 363
DpnII	GATC	2 cut(s)	232, 361
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	261, 432
Eco147I	AGGCCT	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	217, 269
EcoT14I	CCWWGG	2 cut(s)	261, 432
ErhI	CCWWGG	2 cut(s)	261, 432
FaiI	YATR	1 cut(s)	46
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	208, 458
FokI	GGATG	3 cut(s)	287, 338, 497
Fsp4HI	GCNGC	2 cut(s)	208, 458
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	208, 458
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	7 cut(s)	168, 186, 223, 260, 269, 379, 431
HapII	CCGG	3 cut(s)	164, 183, 454
HhaI	GCGC	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HindIII	AAGCTT	4 cut(s)	92, 121, 134, 518
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	3 cut(s)	164, 183, 454
Hpy188III	TCNNGA	2 cut(s)	510, 526
HpyCH4III	ACNGT	3 cut(s)	41, 303, 561
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 266, 463
HpyF3I	CTNAG	2 cut(s)	90, 132
HspAI	GCGC	1 cut(s)	293
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	232, 361
LmnI	GCTCC	3 cut(s)	215, 436, 528
Lsp1109I	GCAGC	2 cut(s)	219, 469
MalI	GATC	2 cut(s)	234, 363
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	2 cut(s)	232, 361
MboII	GAAGA	7 cut(s)	72, 139, 210, 213, 325, 437, 481
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	182
MspI	CCGG	3 cut(s)	164, 183, 454
MspR9I	CCNGG	4 cut(s)	164, 165, 219, 271
MvaI	CCWGG	2 cut(s)	219, 271
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	179, 266, 463
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	2 cut(s)	164, 165
NdeII	GATC	2 cut(s)	232, 361
NgoMIV	GCCGGC	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	363
NmeAIII	GCCGAG	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	379
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	209, 459
Psp6I	CCWGG	2 cut(s)	217, 269
PspGI	CCWGG	2 cut(s)	217, 269
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	166, 221
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SatI	GCNGC	2 cut(s)	208, 458
Sau3AI	GATC	2 cut(s)	232, 361
Sau96I	GGNCC	2 cut(s)	166, 221
ScrFI	CCNGG	4 cut(s)	164, 165, 219, 271
SfcI	CTRYAG	1 cut(s)	308
SfiI	GGCCNNNNNGGCC	1 cut(s)	266
SmaI	CCCGGG	1 cut(s)	165
SrfI	GCCCGGGC	1 cut(s)	165
Sse9I	AATT	1 cut(s)	538
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	4 cut(s)	24, 180, 242, 439
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	4 cut(s)	162, 163, 217, 269
StyI	CCWWGG	2 cut(s)	261, 432
TaaI	ACNGT	3 cut(s)	41, 303, 561
TaqI	TCGA	1 cut(s)	509
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	513
TseI	GCWGC	2 cut(s)	207, 457
TspDTI	ATGAA	3 cut(s)	33, 438, 512
TspMI	CCCGGG	1 cut(s)	163
XmaI	CCCGGG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.