Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

12329359 .. 12329979

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAACTCCTCCTCCACTCTCGCTTCCTCCTCCTTCTCTACATCCTCATCTCTCTTCCAATACAAACTCATTCCCAGTAAACCAACCCAACCTTCCCTTCTCCGTTTTGACCCTCCCCATTCCCACAATTCCCACAATGTCCCTGCCCTCAAAGTCACAGCCTCCTCCGCCGCCCACCACCACCGACCCCTCCTCCCAGGTAACACCCACAACAACCCAAGCCCGATTCTTCAAACTCTTAAACATTACGCCAAAACCGCCATTCTCATCGGAGTCACCGCCGCCGTGTTCACCACCAAATCATCGACTTTGCTCGCCATAGCCGAACCTCCGCCGACATTGACCGAAGAAGCGCCGACCCAGGTCACAGATAACGAGAACAACCAATCCTCATTGCCATTGTCCGACTTCCTGGGTTCGAATTCGGAAGCCATCGGTGCCCTGAAATCGCTTCTGCAGCAGAAGCTCGAAAATGGCGAGGACGACGAGGCGCTCAAGATCCTGCAGTGCTTGGTCGAGGCGCAGCCGTCCAATACCGAGTGGAAGTTCATGATGGAACGAGAGAACGAGAGAACGAGAGAGAGCCTGAGGTTCGGGTTATGCAAGAGAGCTCTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

207

Amino Acids

22.55

Weight (kDa)

7.1

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AciI	CCGC	6 cut(s)	168, 171, 258, 279, 282, 332
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	421
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	3 cut(s)	196, 360, 411
AjuI	GAANNNNNNNTTGG	4 cut(s)	76, 81, 108, 113
AloI	GAACNNNNNNTCC	3 cut(s)	28, 371, 403
AluBI	AGCT	2 cut(s)	466, 611
AluI	AGCT	2 cut(s)	466, 611
Alw21I	GWGCWC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	457, 523
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	3 cut(s)	355, 493, 523
AsuHPI	GGTGA	2 cut(s)	268, 283
AsuII	TTCGAA	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	469, 535
BccI	CCATC	2 cut(s)	440, 547
BceAI	ACGGC	2 cut(s)	269, 511
BciT130I	CCWGG	3 cut(s)	198, 362, 413
BfmI	CTRYAG	2 cut(s)	455, 503
BfoI	RGCGCY	2 cut(s)	356, 494
BisI	GCNGC	4 cut(s)	171, 282, 458, 524
BlsI	GCNGC	4 cut(s)	172, 283, 459, 525
Bme1390I	CCNGG	3 cut(s)	198, 362, 413
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	3 cut(s)	198, 362, 413
BmrI	ACTGGG	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	196, 360, 412
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 177, 207
Bse1I	ACTGG	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	198, 362, 413
BseDI	CCNNGG	3 cut(s)	196, 360, 412
BseGI	GGATG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	578, 605
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	3 cut(s)	19, 154, 182
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	469, 535
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	442, 613
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	6 cut(s)	168, 171, 258, 279, 282, 332
BspCNI	CTCAG	2 cut(s)	579, 606
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	439
BspMAI	CTGCAG	2 cut(s)	459, 507
BspPI	GGATC	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	3 cut(s)	196, 360, 412
BssMI	GATC	1 cut(s)	498
Bst2UI	CCWGG	3 cut(s)	198, 362, 413
Bst6I	CTCTTC	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	587, 614
BstF5I	GGATG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	356, 494
BstHHI	GCGC	3 cut(s)	355, 493, 523
BstKTI	GATC	1 cut(s)	501
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 257, 437, 457, 463
BstNI	CCWGG	3 cut(s)	198, 362, 413
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	196, 360, 411
BstSFI	CTRYAG	2 cut(s)	455, 503
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	2 cut(s)	469, 535
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
Bsu36I	CCTNAGG	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	3 cut(s)	355, 493, 523
CviAII	CATG	1 cut(s)	550
CviJI	RGCY	8 cut(s)	161, 222, 323, 431, 466, 526, 585, 611
CviKI_1	RGCY	8 cut(s)	161, 222, 323, 431, 466, 526, 585, 611
DdeI	CTNAG	2 cut(s)	587, 614
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	2 cut(s)	157, 321
Ecl136II	GAGCTC	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	611
Eco81I	CCTNAGG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	196, 360, 411
EcoT38I	GRGCYC	1 cut(s)	613
FaeI	CATG	1 cut(s)	553
FaiI	YATR	3 cut(s)	320, 551, 601
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	549
Fnu4HI	GCNGC	4 cut(s)	171, 282, 458, 524
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	4 cut(s)	171, 282, 458, 524
GlaI	GCGC	3 cut(s)	354, 492, 522
GluI	GCNGC	4 cut(s)	171, 282, 458, 524
HaeII	RGCGCY	2 cut(s)	356, 494
HhaI	GCGC	3 cut(s)	355, 493, 523
Hin1II	CATG	1 cut(s)	553
Hin6I	GCGC	3 cut(s)	353, 491, 521
HinP1I	GCGC	3 cut(s)	353, 491, 521
HinfI	GANTC	2 cut(s)	226, 273
HphI	GGTGA	2 cut(s)	268, 283
Hpy166II	GTNNAC	2 cut(s)	80, 291
Hpy188I	TCNGA	4 cut(s)	272, 406, 427, 615
Hpy188III	TCNNGA	2 cut(s)	496, 550
Hpy8I	GTNNAC	2 cut(s)	80, 291
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	3 cut(s)	43, 102, 107
HpyCH4V	TGCA	3 cut(s)	457, 505, 603
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 257, 437, 457, 463
HpyF3I	CTNAG	2 cut(s)	587, 614
Hsp92II	CATG	1 cut(s)	553
HspAI	GCGC	3 cut(s)	353, 491, 521
Kzo9I	GATC	1 cut(s)	498
Lsp1109I	GCAGC	2 cut(s)	469, 535
MaeIII	GTNAC	4 cut(s)	154, 200, 274, 364
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MboII	GAAGA	3 cut(s)	46, 221, 359
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	442, 613
MluCI	AATT	2 cut(s)	127, 421
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	429
MseI	TTAA	1 cut(s)	240
MspR9I	CCNGG	3 cut(s)	198, 362, 413
MvaI	CCWGG	3 cut(s)	198, 362, 413
MwoI	GCNNNNNNNGC	5 cut(s)	167, 257, 437, 457, 463
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	3 cut(s)	154, 274, 364
NspV	TTCGAA	1 cut(s)	419
PagI	TCATGA	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 474
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	172, 283, 459, 525
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PshAI	GACNNNNGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	196, 360, 411
PspGI	CCWGG	3 cut(s)	196, 360, 411
PspN4I	GGNNCC	1 cut(s)	439
PstI	CTGCAG	2 cut(s)	459, 507
PsuI	RGATCY	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	613
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	171, 282, 458, 524
Sau3AI	GATC	1 cut(s)	498
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	3 cut(s)	198, 362, 413
SduI	GDGCHC	2 cut(s)	442, 613
SetI	ASST	8 cut(s)	94, 202, 331, 366, 468, 593, 613, 620
SfcI	CTRYAG	2 cut(s)	455, 503
SfuI	TTCGAA	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	127, 421
SsiI	CCGC	6 cut(s)	168, 171, 258, 279, 282, 332
SstI	GAGCTC	1 cut(s)	613
StyD4I	CCNGG	3 cut(s)	196, 360, 411
TaqI	TCGA	4 cut(s)	305, 419, 468, 516
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	127, 421
TauI	GCSGC	2 cut(s)	173, 284
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	3 cut(s)	154, 274, 364
TseI	GCWGC	2 cut(s)	457, 523
Tsp45I	GTSAC	3 cut(s)	154, 274, 364
TspDTI	ATGAA	2 cut(s)	17, 538
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.