Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

68827518 .. 68828480

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG455600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAACTCCTCAACTCTAGCCTCATCCTCCTCCTCATCCCTCTTCCAATTCAAGCTCACTCCCACCAAACCCACCCAACCTTCTCTTCTCCGTTTCGCCCCTCCACATTCCCAAAATGCCCTCAAAGTCACCGCCTCCACCAACCCCCACTCCATTCTCCAAACCGCCAAGCAATACGCCAAGGCCGCCATCCTCATCGGCGTCACCGCCACCGTCTTCCACAACTCTTCCAAACTCCTCGCCCGGGCCGACCCGCCCCCGCCGGCCACATTGACCGAAGAAGAAGAAGCAGCAGCTCCCAAGCAGGGCCAAAATGAAACCCAAGCCTCTCCGTTATCCGATTTCCTCGGCTCCAACTCCGACGCCGTCGACGCCCTCAAGTCGCTCCTGCAGCAGAAGCTCGAGAACGGCGAGGACGACGAGGCGCTGAAGATTCTGCAGCGCCTCGCGGCGGCGCAGCCGTCCGTGACGGAGTGGAAGTTCCTCATGGCCAGGGTTCTGAGCGAGATGGGGGAAACCGGTAGTGCGCGCCAGGTGTTCGAGGAAATTCTCGAGTCGAATCCACTGTCGTTTGAGGCCTTGTTCGAGAATGCTCTGCTGATGGACCGCTCCGGCGAGGGCCACGCCGTGATCAGGCGGCTGGAGGAGGCGCTGGCGGTGGCGGAGGAGGAGAACAAGGCCAAGGAGGCCAGGGATGTGAAGCTGATAATGGCGCAGATACAGTTCCTGCAGAAGAATGTGGACGATGCGTTGAGTAGCTACAATGAGCTGGTCAAGGAGGATCCCAAAGACTTCAGGCCTTATTTTTGTAGGGGAATGATTTACAGCTTGCTGGAGAGGAATGAAGAGGCCAAGGAGCAGTTTGAGAAGTACCGGCAGCTTTCGCCCAAGAAGTTTGAGGTGGATGGCTACTTGATGAAGCCATTGTCGAGAATCAAGCTTTTCGGGAGCGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

320

Amino Acids

35.55

Weight (kDa)

5.22

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	2 cut(s)	449, 529
AclWI	GGATC	2 cut(s)	776, 789
AcoI	YGGCCR	2 cut(s)	264, 489
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	2 cut(s)	449, 778
AcyI	GRCGYC	3 cut(s)	201, 363, 372
AdeI	CACNNNGTG	1 cut(s)	628
AfaI	GTAC	1 cut(s)	872
AfiI	CCNNNNNNNGG	4 cut(s)	244, 305, 451, 633
AgeI	ACCGGT	1 cut(s)	518
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	491, 531, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AloI	GAACNNNNNNTCC	2 cut(s)	464, 496
AluBI	AGCT	9 cut(s)	55, 296, 400, 703, 759, 769, 828, 880, 940
AluI	AGCT	9 cut(s)	55, 296, 400, 703, 759, 769, 828, 880, 940
AlwI	GGATC	2 cut(s)	776, 789
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	3 cut(s)	243, 401, 551
ApeKI	GCWGC	6 cut(s)	290, 293, 391, 439, 457, 877
ApoI	RAATTY	1 cut(s)	546
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AsiGI	ACCGGT	1 cut(s)	518
AspLEI	GCGC	7 cut(s)	427, 444, 457, 529, 531, 652, 715
AspS9I	GGNCC	4 cut(s)	246, 307, 604, 619
AsuC2I	CCSGG	2 cut(s)	244, 245
AsuHPI	GGTGA	2 cut(s)	121, 196
AvaI	CYCGRG	3 cut(s)	243, 401, 551
AvaII	GGWCC	1 cut(s)	604
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	6 cut(s)	302, 305, 403, 451, 469, 889
BccI	CCATC	4 cut(s)	197, 502, 595, 899
BceAI	ACGGC	4 cut(s)	350, 424, 445, 611
BciT130I	CCWGG	3 cut(s)	493, 533, 691
BclI	TGATCA	1 cut(s)	630
BcnI	CCSGG	2 cut(s)	244, 245
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	3 cut(s)	389, 437, 728
BfoI	RGCGCY	3 cut(s)	428, 445, 653
BglI	GCCNNNNNGGC	1 cut(s)	686
Bme1390I	CCNGG	5 cut(s)	244, 245, 493, 533, 691
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	3 cut(s)	243, 401, 551
BmgT120I	GGNCC	4 cut(s)	246, 307, 604, 619
BmiI	GGNNCC	2 cut(s)	352, 783
BmrFI	CCNGG	5 cut(s)	244, 245, 493, 533, 691
BmsI	GCATC	1 cut(s)	736
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	2 cut(s)	662, 854
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	244, 245
BsaHI	GRCGYC	3 cut(s)	201, 363, 372
BsaJI	CCNNGG	7 cut(s)	180, 243, 346, 492, 681, 690, 852
BsaWI	WCCGGW	1 cut(s)	518
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 464, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 305, 451, 633
Bse118I	RCCGGY	3 cut(s)	262, 518, 873
BseBI	CCWGG	3 cut(s)	493, 533, 691
BseDI	CCNNGG	7 cut(s)	180, 243, 346, 492, 681, 690, 852
BseGI	GGATG	5 cut(s)	23, 35, 189, 700, 910
BseLI	CCNNNNNNNGG	4 cut(s)	244, 305, 451, 633
BseMII	CTCAG	1 cut(s)	491
BsePI	GCGCGC	1 cut(s)	527
BseRI	GAGGAG	6 cut(s)	19, 22, 227, 659, 680, 683
BseXI	GCAGC	6 cut(s)	302, 305, 403, 451, 469, 889
Bsh1236I	CGCG	2 cut(s)	449, 529
BshTI	ACCGGT	1 cut(s)	518
BsiHKCI	CYCGRG	3 cut(s)	243, 401, 551
BsiSI	CCGG	5 cut(s)	244, 263, 519, 612, 874
BslI	CCNNNNNNNGG	4 cut(s)	244, 305, 451, 633
BsmI	GAATGC	1 cut(s)	595
BsoBI	CYCGRG	3 cut(s)	243, 401, 551
Bsp143I	GATC	2 cut(s)	630, 781
BspCNI	CTCAG	1 cut(s)	492
BspFNI	CGCG	2 cut(s)	449, 529
BspLI	GGNNCC	2 cut(s)	352, 783
BspMAI	CTGCAG	3 cut(s)	393, 441, 732
BspPI	GGATC	2 cut(s)	776, 789
BsrBI	CCGCTC	1 cut(s)	609
BsrFI	RCCGGY	3 cut(s)	262, 518, 873
BssAI	RCCGGY	3 cut(s)	262, 518, 873
BssECI	CCNNGG	7 cut(s)	180, 243, 346, 492, 681, 690, 852
BssHII	GCGCGC	1 cut(s)	527
BssMI	GATC	2 cut(s)	630, 781
BssNI	GRCGYC	3 cut(s)	201, 363, 372
BssT1I	CCWWGG	3 cut(s)	180, 681, 852
Bst2UI	CCWGG	3 cut(s)	493, 533, 691
Bst4CI	ACNGT	3 cut(s)	214, 567, 723
Bst6I	CTCTTC	4 cut(s)	47, 90, 232, 840
BstACI	GRCGYC	3 cut(s)	201, 363, 372
BstC8I	GCNNGC	4 cut(s)	264, 529, 654, 830
BstDEI	CTNAG	1 cut(s)	500
BstF5I	GGATG	5 cut(s)	23, 35, 189, 700, 910
BstFNI	CGCG	2 cut(s)	449, 529
BstH2I	RGCGCY	3 cut(s)	428, 445, 653
BstHHI	GCGC	7 cut(s)	427, 444, 457, 529, 531, 652, 715
BstKTI	GATC	2 cut(s)	633, 784
BstMBI	GATC	2 cut(s)	630, 781
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 371, 391, 397, 686, 883
BstNI	CCWGG	3 cut(s)	493, 533, 691
BstSCI	CCNGG	5 cut(s)	242, 243, 491, 531, 689
BstSFI	CTRYAG	3 cut(s)	389, 437, 728
BstUI	CGCG	2 cut(s)	449, 529
BstV1I	GCAGC	6 cut(s)	302, 305, 403, 451, 469, 889
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BtsCI	GGATG	5 cut(s)	23, 35, 189, 700, 910
BtsIMutI	CAGTG	1 cut(s)	563
Cac8I	GCNNGC	4 cut(s)	264, 529, 654, 830
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	7 cut(s)	427, 444, 457, 529, 531, 652, 715
Cfr10I	RCCGGY	3 cut(s)	262, 518, 873
Cfr13I	GGNCC	4 cut(s)	246, 307, 604, 619
Cfr9I	CCCGGG	1 cut(s)	243
CseI	GACGC	3 cut(s)	190, 371, 380
Csp6I	GTAC	1 cut(s)	871
CspAI	ACCGGT	1 cut(s)	518
CviAII	CATG	1 cut(s)	487
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	2 cut(s)	632, 783
DpnII	GATC	2 cut(s)	630, 781
DraIII	CACNNNGTG	1 cut(s)	628
EaeI	YGGCCR	2 cut(s)	264, 489
Eam1104I	CTCTTC	4 cut(s)	47, 90, 232, 840
EarI	CTCTTC	4 cut(s)	47, 90, 232, 840
EciI	GGCGGA	1 cut(s)	677
Eco130I	CCWWGG	3 cut(s)	180, 681, 852
Eco147I	AGGCCT	2 cut(s)	578, 799
Eco47I	GGWCC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	449, 778
Eco88I	CYCGRG	3 cut(s)	243, 401, 551
EcoRII	CCWGG	3 cut(s)	491, 531, 689
EcoT14I	CCWWGG	3 cut(s)	180, 681, 852
ErhI	CCWWGG	3 cut(s)	180, 681, 852
FaeI	CATG	1 cut(s)	490
FaiI	YATR	1 cut(s)	488
FatI	CATG	1 cut(s)	486
FauI	CCCGC	2 cut(s)	261, 267
FbaI	TGATCA	1 cut(s)	630
FblI	GTMKAC	1 cut(s)	369
FokI	GGATG	5 cut(s)	10, 22, 176, 707, 917
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	7 cut(s)	426, 443, 456, 528, 530, 651, 714
GsuI	CTGGAG	2 cut(s)	662, 854
HaeII	RGCGCY	3 cut(s)	428, 445, 653
HapII	CCGG	5 cut(s)	244, 263, 519, 612, 874
HgaI	GACGC	3 cut(s)	190, 371, 380
HhaI	GCGC	7 cut(s)	427, 444, 457, 529, 531, 652, 715
Hin1I	GRCGYC	3 cut(s)	201, 363, 372
Hin1II	CATG	1 cut(s)	490
Hin6I	GCGC	7 cut(s)	425, 442, 455, 527, 529, 650, 713
HinP1I	GCGC	7 cut(s)	425, 442, 455, 527, 529, 650, 713
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	938
HinfI	GANTC	4 cut(s)	433, 554, 559, 933
HpaII	CCGG	5 cut(s)	244, 263, 519, 612, 874
HphI	GGTGA	2 cut(s)	121, 196
Hpy166II	GTNNAC	2 cut(s)	370, 742
Hpy188I	TCNGA	3 cut(s)	340, 361, 501
Hpy188III	TCNNGA	5 cut(s)	403, 551, 586, 930, 946
Hpy8I	GTNNAC	2 cut(s)	370, 742
Hpy99I	CGWCG	4 cut(s)	365, 371, 374, 422
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	3 cut(s)	214, 567, 723
HpyCH4V	TGCA	3 cut(s)	391, 439, 730
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 371, 391, 397, 686, 883
HpyF3I	CTNAG	1 cut(s)	500
Hsp92I	GRCGYC	3 cut(s)	201, 363, 372
Hsp92II	CATG	1 cut(s)	490
HspAI	GCGC	7 cut(s)	425, 442, 455, 527, 529, 650, 713
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	630, 781
LmnI	GCTCC	6 cut(s)	301, 356, 390, 614, 856, 948
Lsp1109I	GCAGC	6 cut(s)	302, 305, 403, 451, 469, 889
LweI	GCATC	1 cut(s)	736
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	127, 202, 466
MalI	GATC	2 cut(s)	632, 783
MbiI	CCGCTC	1 cut(s)	609
MboI	GATC	2 cut(s)	630, 781
MflI	RGATCY	1 cut(s)	781
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	3 cut(s)	47, 546, 958
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	378, 384
Mox20I	TGGCCA	1 cut(s)	491
MroNI	GCCGGC	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	5 cut(s)	244, 263, 519, 612, 874
MspR9I	CCNGG	5 cut(s)	244, 245, 493, 533, 691
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	3 cut(s)	493, 533, 691
MvnI	CGCG	2 cut(s)	449, 529
MwoI	GCNNNNNNNGC	6 cut(s)	185, 371, 391, 397, 686, 883
NaeI	GCCGGC	1 cut(s)	264
NciI	CCSGG	2 cut(s)	244, 245
NdeII	GATC	2 cut(s)	630, 781
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	2 cut(s)	352, 783
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	3 cut(s)	127, 202, 466
PaeR7I	CTCGAG	2 cut(s)	401, 551
PauI	GCGCGC	1 cut(s)	527
PceI	AGGCCT	2 cut(s)	578, 799
PcsI	WCGNNNNNNNCGW	3 cut(s)	246, 408, 414
PctI	GAATGC	1 cut(s)	595
PdiI	GCCGGC	1 cut(s)	264
PfeI	GAWTC	3 cut(s)	433, 559, 933
PflFI	GACNNNGTC	1 cut(s)	365
PinAI	ACCGGT	1 cut(s)	518
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	3 cut(s)	491, 531, 689
PspGI	CCWGG	3 cut(s)	491, 531, 689
PspN4I	GGNNCC	2 cut(s)	352, 783
PspPI	GGNCC	4 cut(s)	246, 307, 604, 619
PstI	CTGCAG	3 cut(s)	393, 441, 732
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	781
PsyI	GACNNNGTC	1 cut(s)	365
PteI	GCGCGC	1 cut(s)	527
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
SalI	GTCGAC	1 cut(s)	368
Sau3AI	GATC	2 cut(s)	630, 781
Sau96I	GGNCC	4 cut(s)	246, 307, 604, 619
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	5 cut(s)	244, 245, 493, 533, 691
SfaNI	GCATC	1 cut(s)	736
SfcI	CTRYAG	3 cut(s)	389, 437, 728
SfiI	GGCCNNNNNGGCC	1 cut(s)	686
Sfr274I	CTCGAG	2 cut(s)	401, 551
SgrDI	CGTCGACG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	604
SlaI	CTCGAG	2 cut(s)	401, 551
SmaI	CCCGGG	1 cut(s)	245
SmlI	CTYRAG	3 cut(s)	377, 401, 551
SmoI	CTYRAG	3 cut(s)	377, 401, 551
SrfI	GCCCGGGC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	47, 546, 958
SseBI	AGGCCT	2 cut(s)	578, 799
SspMI	CTAG	1 cut(s)	17
StuI	AGGCCT	2 cut(s)	578, 799
StyD4I	CCNGG	5 cut(s)	242, 243, 491, 531, 689
StyI	CCWWGG	3 cut(s)	180, 681, 852
TaaI	ACNGT	3 cut(s)	214, 567, 723
TaqI	TCGA	7 cut(s)	369, 402, 540, 552, 557, 585, 929
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	47, 546, 958
TauI	GCSGC	4 cut(s)	188, 452, 455, 640
TfiI	GAWTC	3 cut(s)	433, 559, 933
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	3 cut(s)	127, 202, 466
TseI	GCWGC	6 cut(s)	290, 293, 391, 439, 457, 877
Tsp45I	GTSAC	3 cut(s)	127, 202, 466
TspDTI	ATGAA	4 cut(s)	17, 330, 858, 932
TspGWI	ACGGA	4 cut(s)	80, 321, 454, 485
TspMI	CCCGGG	1 cut(s)	243
TspRI	CASTG	1 cut(s)	570
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	604
XapI	RAATTY	1 cut(s)	546
XhoI	CTCGAG	2 cut(s)	401, 551
XmaI	CCCGGG	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.