Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

20526009 .. 20527436

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1118800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATGAAGTGTAAGAAGGAAGGGAACATGTCGGATGTGAGGGATTTTAAGCTGTTAGTTGCGCAAATTCGCGTGATGGAGTCAAAGTATTCGGATGCTTTGAAGCTTTATCAAGAGCTTGTGAGGGAAGAACCGAGAGACTTCAGGCCTTATCTGTGTCAAGGAATCATTTATACAATGTTGAGGAAGACTAATGAGGCTGAGAAACAGTTTGAAAAGTTCAGGAAGCTTGTTCCAAAGAACCACCCTTATAAAGAGTATTTTGATGACAATATGTTTGCGACGAAGCTTTTTGGGCAGAAGGTGGAGAGGGAGAGAGCAGCGTCGAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6

Protein Analysis

112

Amino Acids

13.38

Weight (kDa)

9.44

Isoelectric Point (pI)

16.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
Acc16I	TGCGCA	1 cut(s)	63
AccII	CGCG	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	103, 215
AluBI	AGCT	5 cut(s)	52, 106, 118, 229, 289
AluI	AGCT	5 cut(s)	52, 106, 118, 229, 289
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
BseGI	GGATG	2 cut(s)	40, 100
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	40, 100
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	31
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	40, 100
CfoI	GCGC	1 cut(s)	64
CseI	GACGC	1 cut(s)	312
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	7 cut(s)	52, 106, 118, 148, 200, 229, 289
CviKI_1	RGCY	7 cut(s)	52, 106, 118, 148, 200, 229, 289
DdeI	CTNAG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	127
FaeI	CATG	1 cut(s)	31
FaiI	YATR	4 cut(s)	29, 174, 252, 275
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	47, 107
Fsp4HI	GCNGC	1 cut(s)	321
FspI	TGCGCA	1 cut(s)	63
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HindIII	AAGCTT	3 cut(s)	104, 227, 287
HinfI	GANTC	2 cut(s)	80, 165
Hpy188I	TCNGA	3 cut(s)	34, 94, 335
Hpy188III	TCNNGA	2 cut(s)	113, 223
Hpy99I	CGWCG	2 cut(s)	286, 328
HpyAV	CCTTC	3 cut(s)	10, 14, 295
HpyCH4III	ACNGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	62
LpnPI	CCDG	2 cut(s)	130, 208
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	140, 199
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	5 cut(s)	33, 117, 177, 190, 303
MseI	TTAA	1 cut(s)	48
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	63
NspI	RCATGY	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	148
PciI	ACATGT	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	321
SchI	GAGTC	1 cut(s)	89
SetI	ASST	6 cut(s)	54, 108, 120, 231, 291, 306
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	1 cut(s)	66
SseBI	AGGCCT	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	20
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.