Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18420 |
| fragaria_vesca | FvH4_4g36260 FvH4_4g36290 |
| malus_domestica | MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1 |
| prunus_persica | Prupe.1G342400_v2.0.a1 |
| pyrus_communis | pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830 |
| rosa_chinensis | RchiOBHm_Chr4g0446041 |
| rosa_laevigata | RLG00000005697 |
| rosa_multiflora | Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00386420 Rroxscaffold_5G00386460 |
| rosa_samantha | Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600 |
| rosa_wichuraiana | Rw4G036640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 98 |
| AclWI | GGATC | 2 cut(s) | 212, 225 |
| AfaI | GTAC | 1 cut(s) | 308 |
| AgsI | TTSAA | 1 cut(s) | 50 |
| AjnI | CCWGG | 1 cut(s) | 125 |
| AluBI | AGCT | 4 cut(s) | 68, 139, 195, 316 |
| AluI | AGCT | 4 cut(s) | 68, 139, 195, 316 |
| AlwI | GGATC | 2 cut(s) | 212, 225 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 163 |
| AoxI | GGCC | 5 cut(s) | 5, 114, 123, 233, 285 |
| ApeKI | GCWGC | 2 cut(s) | 192, 313 |
| AspLEI | GCGC | 1 cut(s) | 151 |
| BamHI | GGATCC | 1 cut(s) | 217 |
| BbvI | GCAGC | 2 cut(s) | 204, 325 |
| BciT130I | CCWGG | 1 cut(s) | 127 |
| BfmI | CTRYAG | 1 cut(s) | 164 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| BisI | GCNGC | 2 cut(s) | 193, 314 |
| BlsI | GCNGC | 2 cut(s) | 194, 315 |
| Bme1390I | CCNGG | 1 cut(s) | 127 |
| BmiI | GGNNCC | 1 cut(s) | 219 |
| BmrFI | CCNGG | 1 cut(s) | 127 |
| BmsI | GCATC | 1 cut(s) | 172 |
| BpuEI | CTTGAG | 1 cut(s) | 290 |
| BsaJI | CCNNGG | 3 cut(s) | 117, 126, 288 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 170, 200 |
| Bse118I | RCCGGY | 1 cut(s) | 309 |
| Bse1I | ACTGG | 1 cut(s) | 23 |
| BseBI | CCWGG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 3 cut(s) | 117, 126, 288 |
| BseGI | GGATG | 2 cut(s) | 136, 187 |
| BseNI | ACTGG | 1 cut(s) | 23 |
| BseRI | GAGGAG | 3 cut(s) | 97, 116, 119 |
| BseXI | GCAGC | 2 cut(s) | 204, 325 |
| BshFI | GGCC | 5 cut(s) | 7, 116, 125, 235, 287 |
| BsiSI | CCGG | 2 cut(s) | 232, 310 |
| BslFI | GGGAC | 1 cut(s) | 50 |
| BsmFI | GGGAC | 1 cut(s) | 50 |
| BsnI | GGCC | 5 cut(s) | 7, 116, 125, 235, 287 |
| Bsp143I | GATC | 1 cut(s) | 217 |
| BspACI | CCGC | 1 cut(s) | 98 |
| BspANI | GGCC | 5 cut(s) | 7, 116, 125, 235, 287 |
| BspLI | GGNNCC | 1 cut(s) | 219 |
| BspMAI | CTGCAG | 1 cut(s) | 168 |
| BspPI | GGATC | 2 cut(s) | 212, 225 |
| BsrFI | RCCGGY | 1 cut(s) | 309 |
| BsrI | ACTGG | 1 cut(s) | 23 |
| BssAI | RCCGGY | 1 cut(s) | 309 |
| BssECI | CCNNGG | 3 cut(s) | 117, 126, 288 |
| BssMI | GATC | 1 cut(s) | 217 |
| BssT1I | CCWWGG | 2 cut(s) | 117, 288 |
| Bst2UI | CCWGG | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 1 cut(s) | 159 |
| Bst6I | CTCTTC | 2 cut(s) | 74, 276 |
| BstF5I | GGATG | 2 cut(s) | 136, 187 |
| BstHHI | GCGC | 1 cut(s) | 151 |
| BstKTI | GATC | 1 cut(s) | 220 |
| BstMBI | GATC | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 319 |
| BstNI | CCWGG | 1 cut(s) | 127 |
| BstSCI | CCNGG | 1 cut(s) | 125 |
| BstSFI | CTRYAG | 1 cut(s) | 164 |
| BstV1I | GCAGC | 2 cut(s) | 204, 325 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| BsuRI | GGCC | 5 cut(s) | 7, 116, 125, 235, 287 |
| BtsCI | GGATG | 2 cut(s) | 136, 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 30 |
| CaiI | CAGNNNCTG | 1 cut(s) | 163 |
| CfoI | GCGC | 1 cut(s) | 151 |
| Cfr10I | RCCGGY | 1 cut(s) | 309 |
| Csp6I | GTAC | 1 cut(s) | 307 |
| CviJI | RGCY | 9 cut(s) | 7, 68, 116, 125, 139, 195, 235, 287, 316 |
| CviKI_1 | RGCY | 9 cut(s) | 7, 68, 116, 125, 139, 195, 235, 287, 316 |
| CviQI | GTAC | 1 cut(s) | 307 |
| DpnI | GATC | 1 cut(s) | 219 |
| DpnII | GATC | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 2 cut(s) | 74, 276 |
| EarI | CTCTTC | 2 cut(s) | 74, 276 |
| EciI | GGCGGA | 1 cut(s) | 113 |
| Eco130I | CCWWGG | 2 cut(s) | 117, 288 |
| EcoRII | CCWGG | 1 cut(s) | 125 |
| EcoT14I | CCWWGG | 2 cut(s) | 117, 288 |
| ErhI | CCWWGG | 2 cut(s) | 117, 288 |
| FaqI | GGGAC | 1 cut(s) | 50 |
| Fnu4HI | GCNGC | 2 cut(s) | 193, 314 |
| FokI | GGATG | 2 cut(s) | 143, 194 |
| Fsp4HI | GCNGC | 2 cut(s) | 193, 314 |
| GlaI | GCGC | 1 cut(s) | 150 |
| GluI | GCNGC | 2 cut(s) | 193, 314 |
| HaeIII | GGCC | 5 cut(s) | 7, 116, 125, 235, 287 |
| HapII | CCGG | 2 cut(s) | 232, 310 |
| HhaI | GCGC | 1 cut(s) | 151 |
| Hin6I | GCGC | 1 cut(s) | 149 |
| HinP1I | GCGC | 1 cut(s) | 149 |
| HpaII | CCGG | 2 cut(s) | 232, 310 |
| Hpy188III | TCNNGA | 1 cut(s) | 341 |
| HpyCH4III | ACNGT | 1 cut(s) | 159 |
| HpyCH4V | TGCA | 2 cut(s) | 42, 166 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 319 |
| HspAI | GCGC | 1 cut(s) | 149 |
| Kzo9I | GATC | 1 cut(s) | 217 |
| LmnI | GCTCC | 2 cut(s) | 292, 343 |
| LpnPI | CCDG | 7 cut(s) | 36, 56, 112, 139, 176, 245, 323 |
| Lsp1109I | GCAGC | 2 cut(s) | 204, 325 |
| LweI | GCATC | 1 cut(s) | 172 |
| MalI | GATC | 1 cut(s) | 219 |
| MboI | GATC | 1 cut(s) | 217 |
| MboII | GAAGA | 3 cut(s) | 91, 181, 293 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MspI | CCGG | 2 cut(s) | 232, 310 |
| MspR9I | CCNGG | 1 cut(s) | 127 |
| MvaI | CCWGG | 1 cut(s) | 127 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 319 |
| NdeII | GATC | 1 cut(s) | 217 |
| NlaIV | GGNNCC | 1 cut(s) | 219 |
| PkrI | GCNGC | 2 cut(s) | 194, 315 |
| Psp6I | CCWGG | 1 cut(s) | 125 |
| PspGI | CCWGG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 1 cut(s) | 219 |
| PstI | CTGCAG | 1 cut(s) | 168 |
| PstNI | CAGNNNCTG | 1 cut(s) | 163 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 308 |
| RsaNI | GTAC | 1 cut(s) | 307 |
| SatI | GCNGC | 2 cut(s) | 193, 314 |
| Sau3AI | GATC | 1 cut(s) | 217 |
| ScrFI | CCNGG | 1 cut(s) | 127 |
| SetI | ASST | 5 cut(s) | 70, 141, 197, 318, 339 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| SfcI | CTRYAG | 1 cut(s) | 164 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 122 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| SsiI | CCGC | 1 cut(s) | 98 |
| StyD4I | CCNGG | 1 cut(s) | 125 |
| StyI | CCWWGG | 2 cut(s) | 117, 288 |
| TaaI | ACNGT | 1 cut(s) | 159 |
| TscAI | CASTG | 1 cut(s) | 30 |
| TseI | GCWGC | 2 cut(s) | 192, 313 |
| TspDTI | ATGAA | 1 cut(s) | 294 |
| TspRI | CASTG | 1 cut(s) | 30 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 67 |