Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

33291699 .. 33292658

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAACTCACCCTCAACTCTAGCCTCCTCCTCCTCCTCCTCTTCATCTCTCTTCCGTATTAACCACCTCACTCCCACCAAACCCACCCCAACTTCTCTTCTCCGTTTTGCCCCTCCACTTTCCCATAATACCCTCAAAGTCTCCGCCTCCACCAACAACTCCGTCCTTCAAACCGCCAAGCAATACGCCAAAACCGCTATCCTCATCGGCGTCACCGCCACCGTCTTCCACCACCACTCCAAACTCCTCGCGCGTGCCGACCACGCGCCGCCTCCTCCCCCGCTCACCGAACCAGCTCCAGCTCCAGATGAGAGCCACCAGGCCTCTCCGCTGTCCGATTTCCTCGGCTCCAACGCCGACGCCGTCGCCGCGCTCAAGTCGCTGCTCCAGCAGAAGCTCGAGAGCGGCGAGGACGACGAGGCGCTGAAGATCCTGCAGCGCCTGGCGGAGGCGCAGCCGGCCGTGACGGAGTGGAAGTTCCTGACGGCGAGGCTTCTGAGCGAGATGGGGGAGACCGGGAGTGCACGCCAGGTGTTTGAGGAAATTCTCGAGACGAATCCGCTGTCGTTTGAGGCCTTGTTTGAGAACGCATTACTCATGGACCGCTCCGGCGAGGGCCACGCAGTGATCAGGCGGCTGGAGGAGGCGCTGAGGGTGGCGGAGGAGGAGAACAAGGTGAAGGAGGCGAGGGATGTGAAGCTGATAATGGCGCAGATACAGTTCTTGCAGAAGAATGTGGAAGATGCTTTGAGTAGTTACAATGAGTTGGTGAAGGAGGATCCTAAGGACTTTAGGCCTTATTTTTGCAGGGGAATGATTTACAGCTTGCTTGAGAGGAATGATGAGGCGAAAGAACAGTTTGAGAAGTATCGGCAGCTTTCACCCAAGAAGTTTGAGGTGGATGGTTACTTGAGATCGCCATTGTCAAGAATCAAGCTTTTCGGCAGCGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

320

Amino Acids

35.49

Weight (kDa)

5.71

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	283, 405, 606
AccII	CGCG	4 cut(s)	251, 253, 266, 371
AclWI	GGATC	3 cut(s)	424, 773, 786
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	446
AcyI	GRCGYC	2 cut(s)	210, 360
AdeI	CACNNNGTG	1 cut(s)	625
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	3 cut(s)	318, 441, 528
AloI	GAACNNNNNNTCC	2 cut(s)	461, 493
AluBI	AGCT	7 cut(s)	296, 302, 397, 700, 825, 877, 937
AluI	AGCT	7 cut(s)	296, 302, 397, 700, 825, 877, 937
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	3 cut(s)	145, 506, 545
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	424, 773, 786
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	2 cut(s)	398, 548
AoxI	GGCC	5 cut(s)	321, 459, 573, 616, 794
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	5 cut(s)	382, 436, 454, 874, 945
ApoI	RAATTY	1 cut(s)	543
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AspLEI	GCGC	8 cut(s)	253, 268, 373, 424, 441, 454, 649, 712
AspS9I	GGNCC	2 cut(s)	601, 616
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	5 cut(s)	205, 277, 688, 781, 873
AvaI	CYCGRG	2 cut(s)	398, 548
AvaII	GGWCC	1 cut(s)	601
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	650
BbvI	GCAGC	4 cut(s)	369, 448, 466, 886
BccI	CCATC	2 cut(s)	499, 896
BceAI	ACGGC	3 cut(s)	347, 446, 501
BciT130I	CCWGG	3 cut(s)	320, 443, 530
BclI	TGATCA	1 cut(s)	627
BcnI	CCSGG	1 cut(s)	517
BcoDI	GTCTC	3 cut(s)	145, 506, 545
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	3 cut(s)	425, 442, 650
BisI	GCNGC	9 cut(s)	269, 369, 383, 406, 437, 455, 635, 875, 946
BlsI	GCNGC	9 cut(s)	270, 370, 384, 407, 438, 456, 636, 876, 947
Bme1390I	CCNGG	4 cut(s)	320, 443, 517, 530
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	2 cut(s)	398, 548
BmgT120I	GGNCC	2 cut(s)	601, 616
BmiI	GGNNCC	2 cut(s)	349, 780
BmrFI	CCNGG	4 cut(s)	320, 443, 517, 530
BmsI	GCATC	1 cut(s)	733
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	4 cut(s)	282, 288, 371, 659
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	3 cut(s)	359, 851, 931
BpuMI	CCSGG	1 cut(s)	517
BsaHI	GRCGYC	2 cut(s)	210, 360
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 461, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	783
BseBI	CCWGG	3 cut(s)	320, 443, 530
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	697, 907
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	488, 641
BseSI	GKGCMC	1 cut(s)	526
BseX3I	CGGCCG	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	369, 448, 466, 886
Bsh1236I	CGCG	4 cut(s)	251, 253, 266, 371
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	5 cut(s)	323, 461, 575, 618, 796
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	2 cut(s)	398, 548
BsiSI	CCGG	3 cut(s)	458, 516, 609
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	145, 506, 545
BsmBI	CGTCTC	1 cut(s)	545
BsnI	GGCC	5 cut(s)	323, 461, 575, 618, 796
Bso31I	GGTCTC	1 cut(s)	506
BsoBI	CYCGRG	2 cut(s)	398, 548
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	4 cut(s)	429, 627, 778, 914
BspANI	GGCC	5 cut(s)	323, 461, 575, 618, 796
BspCNI	CTCAG	2 cut(s)	489, 642
BspFNI	CGCG	4 cut(s)	251, 253, 266, 371
BspLI	GGNNCC	2 cut(s)	349, 780
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	3 cut(s)	424, 773, 786
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	3 cut(s)	283, 405, 606
BsrFI	RCCGGY	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	4 cut(s)	429, 627, 778, 914
BssNI	GRCGYC	2 cut(s)	210, 360
Bst2UI	CCWGG	3 cut(s)	320, 443, 530
Bst4CI	ACNGT	3 cut(s)	223, 720, 858
Bst6I	CTCTTC	3 cut(s)	46, 56, 102
BstACI	GRCGYC	2 cut(s)	210, 360
BstC8I	GCNNGC	4 cut(s)	255, 459, 526, 827
BstDEI	CTNAG	3 cut(s)	497, 650, 783
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	697, 907
BstFNI	CGCG	4 cut(s)	251, 253, 266, 371
BstH2I	RGCGCY	3 cut(s)	425, 442, 650
BstHHI	GCGC	8 cut(s)	253, 268, 373, 424, 441, 454, 649, 712
BstKTI	GATC	4 cut(s)	432, 630, 781, 917
BstMAI	GTCTC	3 cut(s)	145, 506, 545
BstMBI	GATC	4 cut(s)	429, 627, 778, 914
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 263, 368, 379, 388, 458
BstNI	CCWGG	3 cut(s)	320, 443, 530
BstSCI	CCNGG	4 cut(s)	318, 441, 515, 528
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	4 cut(s)	251, 253, 266, 371
BstV1I	GCAGC	4 cut(s)	369, 448, 466, 886
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	429, 778
BstYI	RGATCY	2 cut(s)	429, 778
BstZI	CGGCCG	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	783
BsuRI	GGCC	5 cut(s)	323, 461, 575, 618, 796
BtsCI	GGATG	2 cut(s)	697, 907
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	4 cut(s)	255, 459, 526, 827
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	8 cut(s)	253, 268, 373, 424, 441, 454, 649, 712
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	601, 616
CseI	GACGC	2 cut(s)	199, 368
CviAII	CATG	1 cut(s)	598
DdeI	CTNAG	3 cut(s)	497, 650, 783
DpnI	GATC	4 cut(s)	431, 629, 780, 916
DpnII	GATC	4 cut(s)	429, 627, 778, 914
DraIII	CACNNNGTG	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	459
EagI	CGGCCG	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	46, 56, 102
EarI	CTCTTC	3 cut(s)	46, 56, 102
EciI	GGCGGA	3 cut(s)	133, 461, 674
EclXI	CGGCCG	1 cut(s)	459
Eco147I	AGGCCT	3 cut(s)	323, 575, 796
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	601
Eco52I	CGGCCG	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	446
Eco81I	CCTNAGG	1 cut(s)	783
Eco88I	CYCGRG	2 cut(s)	398, 548
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoRII	CCWGG	3 cut(s)	318, 441, 528
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	1 cut(s)	601
FaiI	YATR	2 cut(s)	126, 599
FatI	CATG	1 cut(s)	597
FauI	CCCGC	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	9 cut(s)	269, 369, 383, 406, 437, 455, 635, 875, 946
FokI	GGATG	2 cut(s)	704, 914
Fsp4HI	GCNGC	9 cut(s)	269, 369, 383, 406, 437, 455, 635, 875, 946
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	8 cut(s)	252, 267, 372, 423, 440, 453, 648, 711
GluI	GCNGC	9 cut(s)	269, 369, 383, 406, 437, 455, 635, 875, 946
GsuI	CTGGAG	4 cut(s)	282, 288, 371, 659
HaeII	RGCGCY	3 cut(s)	425, 442, 650
HaeIII	GGCC	5 cut(s)	323, 461, 575, 618, 796
HapII	CCGG	3 cut(s)	458, 516, 609
HgaI	GACGC	2 cut(s)	199, 368
HhaI	GCGC	8 cut(s)	253, 268, 373, 424, 441, 454, 649, 712
Hin1I	GRCGYC	2 cut(s)	210, 360
Hin1II	CATG	1 cut(s)	601
Hin6I	GCGC	8 cut(s)	251, 266, 371, 422, 439, 452, 647, 710
HinP1I	GCGC	8 cut(s)	251, 266, 371, 422, 439, 452, 647, 710
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	2 cut(s)	556, 930
HpaII	CCGG	3 cut(s)	458, 516, 609
HphI	GGTGA	5 cut(s)	205, 277, 688, 781, 873
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	337, 498
Hpy188III	TCNNGA	6 cut(s)	305, 400, 481, 548, 550, 927
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	3 cut(s)	362, 368, 419
HpyAV	CCTTC	3 cut(s)	176, 673, 766
HpyCH4III	ACNGT	3 cut(s)	223, 720, 858
HpyCH4V	TGCA	4 cut(s)	436, 524, 727, 807
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 263, 368, 379, 388, 458
HpyF3I	CTNAG	3 cut(s)	497, 650, 783
Hsp92I	GRCGYC	2 cut(s)	210, 360
Hsp92II	CATG	1 cut(s)	601
HspAI	GCGC	8 cut(s)	251, 266, 371, 422, 439, 452, 647, 710
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	4 cut(s)	429, 627, 778, 914
LmnI	GCTCC	5 cut(s)	301, 307, 353, 390, 611
Lsp1109I	GCAGC	4 cut(s)	369, 448, 466, 886
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	4 cut(s)	211, 463, 755, 905
MalI	GATC	4 cut(s)	431, 629, 780, 916
MbiI	CCGCTC	3 cut(s)	283, 405, 606
MboI	GATC	4 cut(s)	429, 627, 778, 914
MboII	GAAGA	7 cut(s)	33, 43, 89, 217, 439, 742, 752
MflI	RGATCY	2 cut(s)	429, 778
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	2 cut(s)	543, 955
MmeI	TCCRAC	1 cut(s)	375
MroNI	GCCGGC	1 cut(s)	457
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	2 cut(s)	331, 562
MspI	CCGG	3 cut(s)	458, 516, 609
MspR9I	CCNGG	4 cut(s)	320, 443, 517, 530
MvaI	CCWGG	3 cut(s)	320, 443, 530
MvnI	CGCG	4 cut(s)	251, 253, 266, 371
MwoI	GCNNNNNNNGC	6 cut(s)	194, 263, 368, 379, 388, 458
NaeI	GCCGGC	1 cut(s)	459
NciI	CCSGG	1 cut(s)	517
NdeII	GATC	4 cut(s)	429, 627, 778, 914
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	2 cut(s)	349, 780
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	211, 463
PaeR7I	CTCGAG	2 cut(s)	398, 548
PceI	AGGCCT	3 cut(s)	323, 575, 796
PcsI	WCGNNNNNNNCGW	3 cut(s)	255, 360, 405
PdiI	GCCGGC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	556, 930
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	9 cut(s)	270, 370, 384, 407, 438, 456, 636, 876, 947
Psp6I	CCWGG	3 cut(s)	318, 441, 528
PspGI	CCWGG	3 cut(s)	318, 441, 528
PspN4I	GGNNCC	2 cut(s)	349, 780
PspPI	GGNCC	2 cut(s)	601, 616
PstI	CTGCAG	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	429, 778
PsyI	GACNNNGTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	9 cut(s)	269, 369, 383, 406, 437, 455, 635, 875, 946
Sau3AI	GATC	4 cut(s)	429, 627, 778, 914
Sau96I	GGNCC	2 cut(s)	601, 616
ScrFI	CCNGG	4 cut(s)	320, 443, 517, 530
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	434
Sfr274I	CTCGAG	2 cut(s)	398, 548
SinI	GGWCC	1 cut(s)	601
SlaI	CTCGAG	2 cut(s)	398, 548
SmlI	CTYRAG	5 cut(s)	374, 398, 548, 830, 910
SmoI	CTYRAG	5 cut(s)	374, 398, 548, 830, 910
Sse9I	AATT	2 cut(s)	543, 955
SseBI	AGGCCT	3 cut(s)	323, 575, 796
SspMI	CTAG	1 cut(s)	20
StuI	AGGCCT	3 cut(s)	323, 575, 796
StyD4I	CCNGG	4 cut(s)	318, 441, 515, 528
TaaI	ACNGT	3 cut(s)	223, 720, 858
TaqI	TCGA	2 cut(s)	399, 549
TasI	AATT	2 cut(s)	543, 955
TauI	GCSGC	4 cut(s)	271, 371, 408, 637
TfiI	GAWTC	2 cut(s)	556, 930
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	2 cut(s)	211, 463
TseI	GCWGC	5 cut(s)	382, 436, 454, 874, 945
Tsp45I	GTSAC	2 cut(s)	211, 463
TspDTI	ATGAA	2 cut(s)	17, 33
TspGWI	ACGGA	4 cut(s)	44, 92, 151, 482
TspRI	CASTG	1 cut(s)	630
Tth111I	GACNNNGTC	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	601
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	543
XhoI	CTCGAG	2 cut(s)	398, 548
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.