Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

63466063 .. 63493851

Gene Structure 27789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAACTCCTCAACTCTAGCCTCATCCTCCTCCTCCTCATCCCTCTTCCAATTCAAGCTCACTTCCACCAAACCCACCCAACCTTCTCTTCTCCGTTTCACCCCTCCACATTCCCAAAATGCCCTCAAAGTCACCGCCTCCACCAACCCCCACTCCATTCTCCAAACCGCCAAGCAATACGCCAAGGCCGCCATCCTCATCGGCGTCACCGCCACCGTCTTCCACAACTCTTCCAAACTCCTCGCCCGGGCCGACCCGCCCCCGCCGGCCACATTGACCGAAGAAGAAGAAGAAGCAGCTCCCAACCAGGGCCAAAATGAGACCCAAGCCTCTCCGTTATCCGATTTCCTCGGCTCCAACTCCGACGCCGTCGACGCCCTCAAGTCTCTCCTGCAGCAGAAGCTCGAGAACGGCGAGGACGACGAGGCGCTGAAGATCCTGCAGCGCCTCGCGGCGGCGCAGCCGTCGGTGACGGAGTGGAAGTTCCTCATGGCCAGGGTTCTGAGCGAGATGGGGGAAACCGGTAGTGCGCGCCAGGTGTTCGAGGAAATTCTTGAGTCGAATCCACTGTCGTTTGAGGCCTTGTTCGAGAATGCTCTGCTGATGGACCGCTCCGGCGAGGGCCACGCAGTGATCAGGCGGCTGGAGGAGGCGCTGGCGGTGGCGGAGGAGGAGAACAAGGCCAAGGAGGCCAGGGATGTGAAGCTGATAATGGCGCAGATACAGTTCCTGCAGAAGAATGTGGAGGATGCGTTGAGTAGCTACAATGAGTTGGTGAAGGAGGATCCCAAAGACTTCAGGCCTTATTTTTGTAGAGGAATGATTTACAGCTTGCTTGAGAGGAATGAGGAGGCCAAGGAGCAGTTTGAGAAGTATCGGCAGCTTTCGCCGAAGAAGTTTGAGGTGGATGGCTACTTGATGAAGCCATTGTCGAGAATCAAGCTTTTCGGGAGCGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

321

Amino Acids

35.72

Weight (kDa)

5.09

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	452, 532
AclWI	GGATC	3 cut(s)	430, 779, 792
AcoI	YGGCCR	2 cut(s)	267, 492
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	2 cut(s)	452, 781
AcyI	GRCGYC	3 cut(s)	204, 366, 375
AdeI	CACNNNGTG	1 cut(s)	631
AfiI	CCNNNNNNNGG	3 cut(s)	247, 308, 454
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	4 cut(s)	306, 494, 534, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	8 cut(s)	58, 299, 403, 706, 762, 831, 883, 943
AluI	AGCT	8 cut(s)	58, 299, 403, 706, 762, 831, 883, 943
Alw26I	GTCTC	2 cut(s)	314, 390
AlwI	GGATC	3 cut(s)	430, 779, 792
AlwNI	CAGNNNCTG	1 cut(s)	730
Ama87I	CYCGRG	2 cut(s)	246, 404
ApeKI	GCWGC	5 cut(s)	296, 394, 442, 460, 880
ApoI	RAATTY	1 cut(s)	549
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AsiGI	ACCGGT	1 cut(s)	521
AspLEI	GCGC	7 cut(s)	430, 447, 460, 532, 534, 655, 718
AspS9I	GGNCC	4 cut(s)	249, 310, 607, 622
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	5 cut(s)	91, 124, 199, 481, 787
AvaI	CYCGRG	2 cut(s)	246, 404
AvaII	GGWCC	1 cut(s)	607
BalI	TGGCCA	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	5 cut(s)	308, 406, 454, 472, 892
BccI	CCATC	4 cut(s)	200, 505, 598, 902
BceAI	ACGGC	3 cut(s)	353, 427, 448
BciT130I	CCWGG	4 cut(s)	308, 496, 536, 694
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	2 cut(s)	314, 390
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	3 cut(s)	392, 440, 731
BfoI	RGCGCY	3 cut(s)	431, 448, 656
BglI	GCCNNNNNGGC	1 cut(s)	689
BisI	GCNGC	9 cut(s)	189, 297, 395, 443, 453, 456, 461, 641, 881
BlsI	GCNGC	9 cut(s)	190, 298, 396, 444, 454, 457, 462, 642, 882
Bme1390I	CCNGG	6 cut(s)	247, 248, 308, 496, 536, 694
Bme18I	GGWCC	1 cut(s)	607
BmeT110I	CYCGRG	2 cut(s)	246, 404
BmgT120I	GGNCC	4 cut(s)	249, 310, 607, 622
BmiI	GGNNCC	2 cut(s)	355, 786
BmrFI	CCNGG	6 cut(s)	247, 248, 308, 496, 536, 694
BmsI	GCATC	1 cut(s)	739
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	665
BpuEI	CTTGAG	3 cut(s)	365, 575, 857
BpuMI	CCSGG	2 cut(s)	247, 248
BsaHI	GRCGYC	3 cut(s)	204, 366, 375
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	8 cut(s)	183, 246, 307, 349, 495, 684, 693, 855
BsaWI	WCCGGW	1 cut(s)	521
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 467, 497, 737, 767
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 308, 454
Bse118I	RCCGGY	2 cut(s)	265, 521
BseBI	CCWGG	4 cut(s)	308, 496, 536, 694
BseDI	CCNNGG	8 cut(s)	183, 246, 307, 349, 495, 684, 693, 855
BseGI	GGATG	6 cut(s)	23, 38, 192, 703, 754, 913
BseLI	CCNNNNNNNGG	3 cut(s)	247, 308, 454
BseMII	CTCAG	1 cut(s)	494
BsePI	GCGCGC	1 cut(s)	530
BseRI	GAGGAG	8 cut(s)	19, 22, 25, 230, 662, 683, 686, 863
BseXI	GCAGC	5 cut(s)	308, 406, 454, 472, 892
Bsh1236I	CGCG	2 cut(s)	452, 532
BshTI	ACCGGT	1 cut(s)	521
BsiHKCI	CYCGRG	2 cut(s)	246, 404
BsiSI	CCGG	4 cut(s)	247, 266, 522, 615
BslI	CCNNNNNNNGG	3 cut(s)	247, 308, 454
BsmAI	GTCTC	2 cut(s)	314, 390
BsmI	GAATGC	1 cut(s)	598
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	2 cut(s)	246, 404
Bsp143I	GATC	3 cut(s)	435, 633, 784
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	2 cut(s)	452, 532
BspLI	GGNNCC	2 cut(s)	355, 786
BspMAI	CTGCAG	3 cut(s)	396, 444, 735
BspPI	GGATC	3 cut(s)	430, 779, 792
BspTNI	GGTCTC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	612
BsrFI	RCCGGY	2 cut(s)	265, 521
BssAI	RCCGGY	2 cut(s)	265, 521
BssECI	CCNNGG	8 cut(s)	183, 246, 307, 349, 495, 684, 693, 855
BssHII	GCGCGC	1 cut(s)	530
BssMI	GATC	3 cut(s)	435, 633, 784
BssNI	GRCGYC	3 cut(s)	204, 366, 375
BssT1I	CCWWGG	3 cut(s)	183, 684, 855
Bst2UI	CCWGG	4 cut(s)	308, 496, 536, 694
Bst4CI	ACNGT	3 cut(s)	217, 570, 726
Bst6I	CTCTTC	3 cut(s)	50, 93, 235
BstACI	GRCGYC	3 cut(s)	204, 366, 375
BstC8I	GCNNGC	4 cut(s)	267, 532, 657, 833
BstDEI	CTNAG	1 cut(s)	503
BstF5I	GGATG	6 cut(s)	23, 38, 192, 703, 754, 913
BstFNI	CGCG	2 cut(s)	452, 532
BstH2I	RGCGCY	3 cut(s)	431, 448, 656
BstHHI	GCGC	7 cut(s)	430, 447, 460, 532, 534, 655, 718
BstKTI	GATC	3 cut(s)	438, 636, 787
BstMAI	GTCTC	2 cut(s)	314, 390
BstMBI	GATC	3 cut(s)	435, 633, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 374, 400, 689, 886
BstNI	CCWGG	4 cut(s)	308, 496, 536, 694
BstSCI	CCNGG	6 cut(s)	245, 246, 306, 494, 534, 692
BstSFI	CTRYAG	3 cut(s)	392, 440, 731
BstUI	CGCG	2 cut(s)	452, 532
BstV1I	GCAGC	5 cut(s)	308, 406, 454, 472, 892
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	435, 784
BstYI	RGATCY	2 cut(s)	435, 784
BtsCI	GGATG	6 cut(s)	23, 38, 192, 703, 754, 913
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	566, 636
Cac8I	GCNNGC	4 cut(s)	267, 532, 657, 833
CaiI	CAGNNNCTG	1 cut(s)	730
CfoI	GCGC	7 cut(s)	430, 447, 460, 532, 534, 655, 718
Cfr10I	RCCGGY	2 cut(s)	265, 521
Cfr13I	GGNCC	4 cut(s)	249, 310, 607, 622
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	3 cut(s)	193, 374, 383
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	1 cut(s)	490
DdeI	CTNAG	1 cut(s)	503
DpnI	GATC	3 cut(s)	437, 635, 786
DpnII	GATC	3 cut(s)	435, 633, 784
DraIII	CACNNNGTG	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	267, 492
Eam1104I	CTCTTC	3 cut(s)	50, 93, 235
EarI	CTCTTC	3 cut(s)	50, 93, 235
EciI	GGCGGA	1 cut(s)	680
Eco130I	CCWWGG	3 cut(s)	183, 684, 855
Eco147I	AGGCCT	2 cut(s)	581, 802
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	607
Eco57I	CTGAAG	2 cut(s)	452, 781
Eco88I	CYCGRG	2 cut(s)	246, 404
EcoRII	CCWGG	4 cut(s)	306, 494, 534, 692
EcoT14I	CCWWGG	3 cut(s)	183, 684, 855
ErhI	CCWWGG	3 cut(s)	183, 684, 855
FaeI	CATG	1 cut(s)	493
FaiI	YATR	1 cut(s)	491
FatI	CATG	1 cut(s)	489
FauI	CCCGC	2 cut(s)	264, 270
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	9 cut(s)	189, 297, 395, 443, 453, 456, 461, 641, 881
FokI	GGATG	6 cut(s)	10, 25, 179, 710, 761, 920
Fsp4HI	GCNGC	9 cut(s)	189, 297, 395, 443, 453, 456, 461, 641, 881
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	7 cut(s)	429, 446, 459, 531, 533, 654, 717
GluI	GCNGC	9 cut(s)	189, 297, 395, 443, 453, 456, 461, 641, 881
GsuI	CTGGAG	1 cut(s)	665
HaeII	RGCGCY	3 cut(s)	431, 448, 656
HapII	CCGG	4 cut(s)	247, 266, 522, 615
HgaI	GACGC	3 cut(s)	193, 374, 383
HhaI	GCGC	7 cut(s)	430, 447, 460, 532, 534, 655, 718
Hin1I	GRCGYC	3 cut(s)	204, 366, 375
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	7 cut(s)	428, 445, 458, 530, 532, 653, 716
HinP1I	GCGC	7 cut(s)	428, 445, 458, 530, 532, 653, 716
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	3 cut(s)	557, 562, 936
HpaII	CCGG	4 cut(s)	247, 266, 522, 615
HphI	GGTGA	5 cut(s)	91, 124, 199, 481, 787
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	343, 364, 504
Hpy188III	TCNNGA	5 cut(s)	406, 554, 589, 933, 949
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	5 cut(s)	368, 374, 377, 425, 469
HpyAV	CCTTC	2 cut(s)	93, 772
HpyCH4III	ACNGT	3 cut(s)	217, 570, 726
HpyCH4V	TGCA	3 cut(s)	394, 442, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 374, 400, 689, 886
HpyF3I	CTNAG	1 cut(s)	503
Hsp92I	GRCGYC	3 cut(s)	204, 366, 375
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	7 cut(s)	428, 445, 458, 530, 532, 653, 716
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	3 cut(s)	435, 633, 784
LmnI	GCTCC	5 cut(s)	304, 359, 617, 859, 951
Lsp1109I	GCAGC	5 cut(s)	308, 406, 454, 472, 892
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	130, 205, 469
MalI	GATC	3 cut(s)	437, 635, 786
MbiI	CCGCTC	1 cut(s)	612
MboI	GATC	3 cut(s)	435, 633, 784
MflI	RGATCY	2 cut(s)	435, 784
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	3 cut(s)	50, 549, 961
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	2 cut(s)	381, 387
Mox20I	TGGCCA	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	494
MspI	CCGG	4 cut(s)	247, 266, 522, 615
MspR9I	CCNGG	6 cut(s)	247, 248, 308, 496, 536, 694
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	4 cut(s)	308, 496, 536, 694
MvnI	CGCG	2 cut(s)	452, 532
MwoI	GCNNNNNNNGC	5 cut(s)	188, 374, 400, 689, 886
NaeI	GCCGGC	1 cut(s)	267
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	3 cut(s)	435, 633, 784
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	2 cut(s)	355, 786
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	3 cut(s)	130, 205, 469
PaeR7I	CTCGAG	1 cut(s)	404
PauI	GCGCGC	1 cut(s)	530
PceI	AGGCCT	2 cut(s)	581, 802
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 411, 417
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	562, 936
PflFI	GACNNNGTC	1 cut(s)	368
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	9 cut(s)	190, 298, 396, 444, 454, 457, 462, 642, 882
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	4 cut(s)	306, 494, 534, 692
PspGI	CCWGG	4 cut(s)	306, 494, 534, 692
PspN4I	GGNNCC	2 cut(s)	355, 786
PspPI	GGNCC	4 cut(s)	249, 310, 607, 622
PstI	CTGCAG	3 cut(s)	396, 444, 735
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	435, 784
PsyI	GACNNNGTC	1 cut(s)	368
PteI	GCGCGC	1 cut(s)	530
SalI	GTCGAC	1 cut(s)	371
SatI	GCNGC	9 cut(s)	189, 297, 395, 443, 453, 456, 461, 641, 881
Sau3AI	GATC	3 cut(s)	435, 633, 784
Sau96I	GGNCC	4 cut(s)	249, 310, 607, 622
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	6 cut(s)	247, 248, 308, 496, 536, 694
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	3 cut(s)	392, 440, 731
SfiI	GGCCNNNNNGGCC	1 cut(s)	689
Sfr274I	CTCGAG	1 cut(s)	404
SgrDI	CGTCGACG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	607
SlaI	CTCGAG	1 cut(s)	404
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	4 cut(s)	380, 404, 554, 836
SmoI	CTYRAG	4 cut(s)	380, 404, 554, 836
SrfI	GCCCGGGC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	50, 549, 961
SseBI	AGGCCT	2 cut(s)	581, 802
SspMI	CTAG	1 cut(s)	17
StuI	AGGCCT	2 cut(s)	581, 802
StyD4I	CCNGG	6 cut(s)	245, 246, 306, 494, 534, 692
StyI	CCWWGG	3 cut(s)	183, 684, 855
TaaI	ACNGT	3 cut(s)	217, 570, 726
TaqI	TCGA	6 cut(s)	372, 405, 543, 560, 588, 932
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	50, 549, 961
TauI	GCSGC	4 cut(s)	191, 455, 458, 643
TfiI	GAWTC	2 cut(s)	562, 936
TscAI	CASTG	2 cut(s)	573, 636
TseFI	GTSAC	3 cut(s)	130, 205, 469
TseI	GCWGC	5 cut(s)	296, 394, 442, 460, 880
Tsp45I	GTSAC	3 cut(s)	130, 205, 469
TspDTI	ATGAA	2 cut(s)	17, 935
TspGWI	ACGGA	3 cut(s)	83, 324, 488
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	573, 636
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	607
XapI	RAATTY	1 cut(s)	549
XhoI	CTCGAG	1 cut(s)	404
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.