Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

65374063 .. 65375031

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAACTCCTCAACTCTAGCCTCATCCTCCTCCTCCTCCTCCTCATCCCTCTTCCAATTCAAGCTCACTCCCACCAAACCCACCCAGCCTTCTCTTCTCCGTTTCGCCCCTCCACATTCCCAAAATGCCCTCAAAGTCACCGCCTCCACCAACCCCCACTCCATTCTCCAAACCGCCAAGCAATACGCCAAGGCCGCCATCCTCATCGGTGTCACCGCCACCGTCTTCCACAACTCTTCCAAACTCCTCGCCCGGGCCGACCCGCCCCCGCCGGCCACATTGACCGAAGAAGAAGAAGCAGCTCCCAACCAGGGCCAAAATGAAACCCAAGCCTCTCCGTTATCCGATTTCCTCGGCTCCAACTCCGACGCCGTCGACGCCCTCAAGTCGCTCCTGCAGCAGAAGCTCGAGAACGGCGAGGACGACGAGGCGCTGAAGATTCTGCAGCGCCTCGCGGCGGCGCAGCCGTCGGTGACGGAGTGGAAGTTCCTCATGGCCAGGGTTCTGAGCGAGATGGGGGAAACCGGTAGTGCGCGCCAGGTGTTCGAGGAAATTCTCGAGTCGAATCCACTGTCGTTTGAGGCCTTGTTCGAGAATGCTCTGCTGATGGACCGCTCCGGCGAGGGCCACGCCGTGATCAGGCGGCTGGAGGAGGCGCTGGCGGTGGCGGAGGAGGAGAACAAGGCCAAGGAGGCCAGAGATGTGAAGCTGATAATGGCGCAGATACAGTTCCTGCAGAAGAATGTGGAGGATGCGTTGAGTAGCTACAATGAGTTGGTCAAGGAGGATCCCAAAGACTTCAGGCCTTATTTTTGTAGAGGAATGATTTACAGCTTGCTTGAGAGGAATGAAGAGGCCAAGGAGCAGTTTGAGAAGTACCGGCAGCTTTCGCCGAACAAGTTTGAGGTGGATGGCTACTTGATGAAGCCATTGTCGAGAATCAAGCTTTTCGGGAGCGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

322

Amino Acids

35.73

Weight (kDa)

5.08

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	615
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	2 cut(s)	455, 535
AclWI	GGATC	2 cut(s)	782, 795
AcoI	YGGCCR	2 cut(s)	273, 495
AcsI	RAATTY	1 cut(s)	552
AcuI	CTGAAG	2 cut(s)	455, 784
AcyI	GRCGYC	2 cut(s)	369, 378
AdeI	CACNNNGTG	1 cut(s)	634
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	4 cut(s)	253, 311, 457, 639
AgeI	ACCGGT	1 cut(s)	524
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	309, 497, 537
AloI	GAACNNNNNNTCC	2 cut(s)	470, 502
AluBI	AGCT	8 cut(s)	64, 302, 406, 709, 765, 834, 886, 946
AluI	AGCT	8 cut(s)	64, 302, 406, 709, 765, 834, 886, 946
AlwI	GGATC	2 cut(s)	782, 795
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	3 cut(s)	252, 407, 557
ApeKI	GCWGC	5 cut(s)	299, 397, 445, 463, 883
ApoI	RAATTY	1 cut(s)	552
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AsiGI	ACCGGT	1 cut(s)	524
AspLEI	GCGC	7 cut(s)	433, 450, 463, 535, 537, 658, 721
AspS9I	GGNCC	4 cut(s)	255, 313, 610, 625
AsuC2I	CCSGG	2 cut(s)	253, 254
AsuHPI	GGTGA	3 cut(s)	130, 205, 484
AvaI	CYCGRG	3 cut(s)	252, 407, 557
AvaII	GGWCC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	217
BbvI	GCAGC	5 cut(s)	311, 409, 457, 475, 895
BccI	CCATC	4 cut(s)	206, 508, 601, 905
BceAI	ACGGC	4 cut(s)	356, 430, 451, 617
BciT130I	CCWGG	3 cut(s)	311, 499, 539
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	2 cut(s)	253, 254
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	3 cut(s)	395, 443, 734
BfoI	RGCGCY	3 cut(s)	434, 451, 659
BglI	GCCNNNNNGGC	1 cut(s)	692
BisI	GCNGC	9 cut(s)	195, 300, 398, 446, 456, 459, 464, 644, 884
BlsI	GCNGC	9 cut(s)	196, 301, 399, 447, 457, 460, 465, 645, 885
Bme1390I	CCNGG	5 cut(s)	253, 254, 311, 499, 539
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	3 cut(s)	252, 407, 557
BmgT120I	GGNCC	4 cut(s)	255, 313, 610, 625
BmiI	GGNNCC	2 cut(s)	358, 789
BmrFI	CCNGG	5 cut(s)	253, 254, 311, 499, 539
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	668
BpuEI	CTTGAG	2 cut(s)	368, 860
BpuMI	CCSGG	2 cut(s)	253, 254
BsaHI	GRCGYC	2 cut(s)	369, 378
BsaJI	CCNNGG	7 cut(s)	189, 252, 310, 352, 498, 687, 858
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	6 cut(s)	143, 173, 470, 500, 740, 770
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 311, 457, 639
Bse118I	RCCGGY	3 cut(s)	271, 524, 879
BseBI	CCWGG	3 cut(s)	311, 499, 539
BseDI	CCNNGG	7 cut(s)	189, 252, 310, 352, 498, 687, 858
BseGI	GGATG	5 cut(s)	23, 44, 198, 757, 916
BseLI	CCNNNNNNNGG	4 cut(s)	253, 311, 457, 639
BseMII	CTCAG	1 cut(s)	497
BsePI	GCGCGC	1 cut(s)	533
BseRI	GAGGAG	9 cut(s)	19, 22, 25, 28, 31, 236, 665, 686, 689
BseXI	GCAGC	5 cut(s)	311, 409, 457, 475, 895
BseYI	CCCAGC	1 cut(s)	84
Bsh1236I	CGCG	2 cut(s)	455, 535
BshTI	ACCGGT	1 cut(s)	524
BsiHKCI	CYCGRG	3 cut(s)	252, 407, 557
BsiSI	CCGG	5 cut(s)	253, 272, 525, 618, 880
BslI	CCNNNNNNNGG	4 cut(s)	253, 311, 457, 639
BsmI	GAATGC	1 cut(s)	601
BsoBI	CYCGRG	3 cut(s)	252, 407, 557
Bsp143I	GATC	2 cut(s)	636, 787
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	2 cut(s)	455, 535
BspLI	GGNNCC	2 cut(s)	358, 789
BspMAI	CTGCAG	3 cut(s)	399, 447, 738
BspPI	GGATC	2 cut(s)	782, 795
BsrBI	CCGCTC	1 cut(s)	615
BsrFI	RCCGGY	3 cut(s)	271, 524, 879
BssAI	RCCGGY	3 cut(s)	271, 524, 879
BssECI	CCNNGG	7 cut(s)	189, 252, 310, 352, 498, 687, 858
BssHII	GCGCGC	1 cut(s)	533
BssMI	GATC	2 cut(s)	636, 787
BssNI	GRCGYC	2 cut(s)	369, 378
BssT1I	CCWWGG	3 cut(s)	189, 687, 858
Bst2UI	CCWGG	3 cut(s)	311, 499, 539
Bst4CI	ACNGT	3 cut(s)	223, 573, 729
Bst6I	CTCTTC	4 cut(s)	56, 99, 241, 846
BstACI	GRCGYC	2 cut(s)	369, 378
BstC8I	GCNNGC	4 cut(s)	273, 535, 660, 836
BstDEI	CTNAG	1 cut(s)	506
BstF5I	GGATG	5 cut(s)	23, 44, 198, 757, 916
BstFNI	CGCG	2 cut(s)	455, 535
BstH2I	RGCGCY	3 cut(s)	434, 451, 659
BstHHI	GCGC	7 cut(s)	433, 450, 463, 535, 537, 658, 721
BstKTI	GATC	2 cut(s)	639, 790
BstMBI	GATC	2 cut(s)	636, 787
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 377, 397, 403, 692, 889
BstNI	CCWGG	3 cut(s)	311, 499, 539
BstSCI	CCNGG	5 cut(s)	251, 252, 309, 497, 537
BstSFI	CTRYAG	3 cut(s)	395, 443, 734
BstUI	CGCG	2 cut(s)	455, 535
BstV1I	GCAGC	5 cut(s)	311, 409, 457, 475, 895
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BtsCI	GGATG	5 cut(s)	23, 44, 198, 757, 916
BtsIMutI	CAGTG	1 cut(s)	569
Cac8I	GCNNGC	4 cut(s)	273, 535, 660, 836
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	7 cut(s)	433, 450, 463, 535, 537, 658, 721
Cfr10I	RCCGGY	3 cut(s)	271, 524, 879
Cfr13I	GGNCC	4 cut(s)	255, 313, 610, 625
Cfr9I	CCCGGG	1 cut(s)	252
CseI	GACGC	2 cut(s)	377, 386
Csp6I	GTAC	1 cut(s)	877
CspAI	ACCGGT	1 cut(s)	524
CviAII	CATG	1 cut(s)	493
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	2 cut(s)	638, 789
DpnII	GATC	2 cut(s)	636, 787
DraIII	CACNNNGTG	1 cut(s)	634
EaeI	YGGCCR	2 cut(s)	273, 495
Eam1104I	CTCTTC	4 cut(s)	56, 99, 241, 846
EarI	CTCTTC	4 cut(s)	56, 99, 241, 846
EciI	GGCGGA	1 cut(s)	683
Eco130I	CCWWGG	3 cut(s)	189, 687, 858
Eco147I	AGGCCT	2 cut(s)	584, 805
Eco47I	GGWCC	1 cut(s)	610
Eco57I	CTGAAG	2 cut(s)	455, 784
Eco88I	CYCGRG	3 cut(s)	252, 407, 557
EcoRII	CCWGG	3 cut(s)	309, 497, 537
EcoT14I	CCWWGG	3 cut(s)	189, 687, 858
ErhI	CCWWGG	3 cut(s)	189, 687, 858
FaeI	CATG	1 cut(s)	496
FaiI	YATR	1 cut(s)	494
FatI	CATG	1 cut(s)	492
FauI	CCCGC	2 cut(s)	270, 276
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	9 cut(s)	195, 300, 398, 446, 456, 459, 464, 644, 884
FokI	GGATG	5 cut(s)	10, 31, 185, 764, 923
Fsp4HI	GCNGC	9 cut(s)	195, 300, 398, 446, 456, 459, 464, 644, 884
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	7 cut(s)	432, 449, 462, 534, 536, 657, 720
GluI	GCNGC	9 cut(s)	195, 300, 398, 446, 456, 459, 464, 644, 884
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	668
HaeII	RGCGCY	3 cut(s)	434, 451, 659
HapII	CCGG	5 cut(s)	253, 272, 525, 618, 880
HgaI	GACGC	2 cut(s)	377, 386
HhaI	GCGC	7 cut(s)	433, 450, 463, 535, 537, 658, 721
Hin1I	GRCGYC	2 cut(s)	369, 378
Hin1II	CATG	1 cut(s)	496
Hin6I	GCGC	7 cut(s)	431, 448, 461, 533, 535, 656, 719
HinP1I	GCGC	7 cut(s)	431, 448, 461, 533, 535, 656, 719
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	4 cut(s)	439, 560, 565, 939
HpaII	CCGG	5 cut(s)	253, 272, 525, 618, 880
HphI	GGTGA	3 cut(s)	130, 205, 484
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	346, 367, 507
Hpy188III	TCNNGA	5 cut(s)	409, 557, 592, 936, 952
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	5 cut(s)	371, 377, 380, 428, 472
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	3 cut(s)	223, 573, 729
HpyCH4V	TGCA	3 cut(s)	397, 445, 736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 377, 397, 403, 692, 889
HpyF3I	CTNAG	1 cut(s)	506
Hsp92I	GRCGYC	2 cut(s)	369, 378
Hsp92II	CATG	1 cut(s)	496
HspAI	GCGC	7 cut(s)	431, 448, 461, 533, 535, 656, 719
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	2 cut(s)	636, 787
LmnI	GCTCC	6 cut(s)	307, 362, 396, 620, 862, 954
Lsp1109I	GCAGC	5 cut(s)	311, 409, 457, 475, 895
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	136, 211, 472
MalI	GATC	2 cut(s)	638, 789
MbiI	CCGCTC	1 cut(s)	615
MboI	GATC	2 cut(s)	636, 787
MflI	RGATCY	1 cut(s)	787
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	3 cut(s)	56, 552, 964
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	2 cut(s)	384, 390
Mox20I	TGGCCA	1 cut(s)	497
MroNI	GCCGGC	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	497
MspI	CCGG	5 cut(s)	253, 272, 525, 618, 880
MspR9I	CCNGG	5 cut(s)	253, 254, 311, 499, 539
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	3 cut(s)	311, 499, 539
MvnI	CGCG	2 cut(s)	455, 535
MwoI	GCNNNNNNNGC	6 cut(s)	194, 377, 397, 403, 692, 889
NaeI	GCCGGC	1 cut(s)	273
NciI	CCSGG	2 cut(s)	253, 254
NdeII	GATC	2 cut(s)	636, 787
NgoMIV	GCCGGC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	2 cut(s)	358, 789
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	3 cut(s)	136, 211, 472
PaeR7I	CTCGAG	2 cut(s)	407, 557
PauI	GCGCGC	1 cut(s)	533
PceI	AGGCCT	2 cut(s)	584, 805
PcsI	WCGNNNNNNNCGW	3 cut(s)	255, 414, 420
PctI	GAATGC	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	439, 565, 939
PflFI	GACNNNGTC	1 cut(s)	371
PinAI	ACCGGT	1 cut(s)	524
PkrI	GCNGC	9 cut(s)	196, 301, 399, 447, 457, 460, 465, 645, 885
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	309, 497, 537
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	3 cut(s)	309, 497, 537
PspN4I	GGNNCC	2 cut(s)	358, 789
PspPI	GGNCC	4 cut(s)	255, 313, 610, 625
PstI	CTGCAG	3 cut(s)	399, 447, 738
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	787
PsyI	GACNNNGTC	1 cut(s)	371
PteI	GCGCGC	1 cut(s)	533
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
SalI	GTCGAC	1 cut(s)	374
SatI	GCNGC	9 cut(s)	195, 300, 398, 446, 456, 459, 464, 644, 884
Sau3AI	GATC	2 cut(s)	636, 787
Sau96I	GGNCC	4 cut(s)	255, 313, 610, 625
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	5 cut(s)	253, 254, 311, 499, 539
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	3 cut(s)	395, 443, 734
SfiI	GGCCNNNNNGGCC	1 cut(s)	692
Sfr274I	CTCGAG	2 cut(s)	407, 557
SgrDI	CGTCGACG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	610
SlaI	CTCGAG	2 cut(s)	407, 557
SmaI	CCCGGG	1 cut(s)	254
SmlI	CTYRAG	4 cut(s)	383, 407, 557, 839
SmoI	CTYRAG	4 cut(s)	383, 407, 557, 839
SrfI	GCCCGGGC	1 cut(s)	254
Sse9I	AATT	3 cut(s)	56, 552, 964
SseBI	AGGCCT	2 cut(s)	584, 805
SspMI	CTAG	1 cut(s)	17
StuI	AGGCCT	2 cut(s)	584, 805
StyD4I	CCNGG	5 cut(s)	251, 252, 309, 497, 537
StyI	CCWWGG	3 cut(s)	189, 687, 858
TaaI	ACNGT	3 cut(s)	223, 573, 729
TaqI	TCGA	7 cut(s)	375, 408, 546, 558, 563, 591, 935
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	3 cut(s)	56, 552, 964
TauI	GCSGC	4 cut(s)	197, 458, 461, 646
TfiI	GAWTC	3 cut(s)	439, 565, 939
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	3 cut(s)	136, 211, 472
TseI	GCWGC	5 cut(s)	299, 397, 445, 463, 883
Tsp45I	GTSAC	3 cut(s)	136, 211, 472
TspDTI	ATGAA	4 cut(s)	17, 336, 864, 938
TspGWI	ACGGA	3 cut(s)	89, 327, 491
TspMI	CCCGGG	1 cut(s)	252
TspRI	CASTG	1 cut(s)	576
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	552
XhoI	CTCGAG	2 cut(s)	407, 557
XmaI	CCCGGG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.