Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18420 |
| fragaria_vesca | FvH4_4g36260 FvH4_4g36290 |
| malus_domestica | MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1 |
| prunus_persica | Prupe.1G342400_v2.0.a1 |
| pyrus_communis | pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830 |
| rosa_chinensis | RchiOBHm_Chr4g0446041 |
| rosa_laevigata | RLG00000005697 |
| rosa_multiflora | Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00386420 Rroxscaffold_5G00386460 |
| rosa_samantha | Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600 |
| rosa_wichuraiana | Rw4G036640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 68, 81 |
| AcuI | CTGAAG | 1 cut(s) | 70 |
| AfaI | GTAC | 1 cut(s) | 164 |
| AluBI | AGCT | 5 cut(s) | 51, 61, 120, 172, 232 |
| AluI | AGCT | 5 cut(s) | 51, 61, 120, 172, 232 |
| AlwI | GGATC | 2 cut(s) | 68, 81 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 19 |
| AoxI | GGCC | 2 cut(s) | 89, 141 |
| ApeKI | GCWGC | 1 cut(s) | 169 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| BamHI | GGATCC | 1 cut(s) | 73 |
| BbvI | GCAGC | 1 cut(s) | 181 |
| BccI | CCATC | 1 cut(s) | 191 |
| BfmI | CTRYAG | 1 cut(s) | 20 |
| BisI | GCNGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 171 |
| BmiI | GGNNCC | 1 cut(s) | 75 |
| BmsI | GCATC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 1 cut(s) | 144 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 26, 56 |
| Bse118I | RCCGGY | 1 cut(s) | 165 |
| BseDI | CCNNGG | 1 cut(s) | 144 |
| BseGI | GGATG | 2 cut(s) | 43, 202 |
| BseXI | GCAGC | 1 cut(s) | 181 |
| BshFI | GGCC | 2 cut(s) | 91, 143 |
| BsiSI | CCGG | 1 cut(s) | 166 |
| BsnI | GGCC | 2 cut(s) | 91, 143 |
| Bsp143I | GATC | 1 cut(s) | 73 |
| BspANI | GGCC | 2 cut(s) | 91, 143 |
| BspLI | GGNNCC | 1 cut(s) | 75 |
| BspMAI | CTGCAG | 1 cut(s) | 24 |
| BspPI | GGATC | 2 cut(s) | 68, 81 |
| BsrFI | RCCGGY | 1 cut(s) | 165 |
| BssAI | RCCGGY | 1 cut(s) | 165 |
| BssECI | CCNNGG | 1 cut(s) | 144 |
| BssMI | GATC | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 1 cut(s) | 144 |
| Bst4CI | ACNGT | 1 cut(s) | 15 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 1 cut(s) | 122 |
| BstF5I | GGATG | 2 cut(s) | 43, 202 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstKTI | GATC | 1 cut(s) | 76 |
| BstMBI | GATC | 1 cut(s) | 73 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 175 |
| BstSFI | CTRYAG | 1 cut(s) | 20 |
| BstV1I | GCAGC | 1 cut(s) | 181 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BsuRI | GGCC | 2 cut(s) | 91, 143 |
| BtsCI | GGATG | 2 cut(s) | 43, 202 |
| Cac8I | GCNNGC | 1 cut(s) | 122 |
| CaiI | CAGNNNCTG | 1 cut(s) | 19 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Cfr10I | RCCGGY | 1 cut(s) | 165 |
| Csp6I | GTAC | 1 cut(s) | 163 |
| CviJI | RGCY | 9 cut(s) | 51, 61, 91, 120, 143, 172, 201, 214, 232 |
| CviKI_1 | RGCY | 9 cut(s) | 51, 61, 91, 120, 143, 172, 201, 214, 232 |
| CviQI | GTAC | 1 cut(s) | 163 |
| DpnI | GATC | 1 cut(s) | 75 |
| DpnII | GATC | 1 cut(s) | 73 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 1 cut(s) | 144 |
| Eco147I | AGGCCT | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 1 cut(s) | 70 |
| EcoT14I | CCWWGG | 1 cut(s) | 144 |
| ErhI | CCWWGG | 1 cut(s) | 144 |
| Fnu4HI | GCNGC | 1 cut(s) | 170 |
| FokI | GGATG | 2 cut(s) | 50, 209 |
| Fsp4HI | GCNGC | 1 cut(s) | 170 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 1 cut(s) | 170 |
| GsuI | CTGGAG | 1 cut(s) | 146 |
| HaeIII | GGCC | 2 cut(s) | 91, 143 |
| HapII | CCGG | 1 cut(s) | 166 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HindIII | AAGCTT | 1 cut(s) | 230 |
| HinfI | GANTC | 1 cut(s) | 225 |
| HpaII | CCGG | 1 cut(s) | 166 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy188III | TCNNGA | 2 cut(s) | 222, 238 |
| HpyAV | CCTTC | 1 cut(s) | 61 |
| HpyCH4III | ACNGT | 1 cut(s) | 15 |
| HpyCH4V | TGCA | 1 cut(s) | 22 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 175 |
| HspAI | GCGC | 1 cut(s) | 5 |
| Kzo9I | GATC | 1 cut(s) | 73 |
| LmnI | GCTCC | 2 cut(s) | 148, 240 |
| LpnPI | CCDG | 5 cut(s) | 32, 47, 73, 110, 179 |
| Lsp1109I | GCAGC | 1 cut(s) | 181 |
| LweI | GCATC | 1 cut(s) | 28 |
| MalI | GATC | 1 cut(s) | 75 |
| MboI | GATC | 1 cut(s) | 73 |
| MboII | GAAGA | 2 cut(s) | 37, 149 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MluCI | AATT | 1 cut(s) | 250 |
| MnlI | CCTC | 5 cut(s) | 28, 64, 123, 133, 184 |
| MspI | CCGG | 1 cut(s) | 166 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 175 |
| NdeII | GATC | 1 cut(s) | 73 |
| NlaIV | GGNNCC | 1 cut(s) | 75 |
| PceI | AGGCCT | 1 cut(s) | 91 |
| PfeI | GAWTC | 1 cut(s) | 225 |
| PkrI | GCNGC | 1 cut(s) | 171 |
| PspN4I | GGNNCC | 1 cut(s) | 75 |
| PstI | CTGCAG | 1 cut(s) | 24 |
| PstNI | CAGNNNCTG | 1 cut(s) | 19 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| RsaI | GTAC | 1 cut(s) | 164 |
| RsaNI | GTAC | 1 cut(s) | 163 |
| SatI | GCNGC | 1 cut(s) | 170 |
| Sau3AI | GATC | 1 cut(s) | 73 |
| SetI | ASST | 6 cut(s) | 53, 63, 122, 174, 195, 234 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SfcI | CTRYAG | 1 cut(s) | 20 |
| Sse9I | AATT | 1 cut(s) | 250 |
| SseBI | AGGCCT | 1 cut(s) | 91 |
| StuI | AGGCCT | 1 cut(s) | 91 |
| StyI | CCWWGG | 1 cut(s) | 144 |
| TaaI | ACNGT | 1 cut(s) | 15 |
| TaqI | TCGA | 1 cut(s) | 221 |
| TasI | AATT | 1 cut(s) | 250 |
| TfiI | GAWTC | 1 cut(s) | 225 |
| TseI | GCWGC | 1 cut(s) | 169 |
| TspDTI | ATGAA | 2 cut(s) | 150, 224 |