Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

66358767 .. 66359882

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAACTCCTCAACTCTAGCCTCATCCTCCTCCTCCTCATCCCTCTTCCAATTCAAGCTCACTCCCACCAAACCCACCCAACCTTCTCTTCTCCGTTTCACCCCTCCACATTCCCAAAATGCCCTCAAAGTCACCGCCTCCACCAACCCCCACTCCATTCTCCAAACCGCCAAGCAATACGCCAAGGCCGCCATCCTCATCGGCGTCACCGCCACCGTCTTCCACAACTCTTCCAAACTCCTCGCCCGGGCCGACCCGCCCCCGCCGGCCACATTGACCGAAGAAGAAGCAGCTCCCAACCAGGGCCAAAATGAAACCCAAGCCTCTCCGTTATCCGATTTCCTCGGCTCCAACTCCGACGCCGTCGACGCCCTCAAGTCGCTCCTGCAGCAGAAGCTCGAGAACGGCGAGGACGACGAGGCGCTGAAGATTCTGCAGCGCCTCGCGGCGGCGCAGCCGTCGGTGACGGAGTGGAAGTTCCTCATGGCCAGGGTTCTGAGCGAGATGGGGGAAACCGGTAGTGCGCGCCAGGTGTTCGAGGAAATTCTCGAGTCGAATCCACTGTCGTTTGAGGCCTTGTTCGAGAATGCTCTGCTGATGGACCGCTCCGGCGAGGGCCACGCAGTGATCAGGCGGCTGGAGGAGGCGCTGGCGGTGGCGGAGGAGGAGAACAAGGCCAAGGAGGCCAGGGATGTGAAGCTGATAATGGCGCAGATACAGTTCCTGCAGAAGAATGTGGAGGATGCGTTGAGTAGCTACAATGAGCTGGTGAAGGAGGATCCCAAAGACTTCAGGCCTTATTTTTGTAGAGGAATGATTTACAGCTTGCTTGAGAGGAATGAGGAGGCCAAGGAGCAGTTTGAGAAGTATCGGCAGCTTTCGCCGAAGAAGTTTGAGGTGGATGGCTACTTGATGAAGCCATTGTCGAGAATCAAGCTTTTCGGGAGCGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

319

Amino Acids

35.47

Weight (kDa)

5.21

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	2 cut(s)	446, 526
AclWI	GGATC	2 cut(s)	773, 786
AcoI	YGGCCR	2 cut(s)	267, 486
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	2 cut(s)	446, 775
AcyI	GRCGYC	3 cut(s)	204, 360, 369
AdeI	CACNNNGTG	1 cut(s)	625
AfiI	CCNNNNNNNGG	3 cut(s)	247, 302, 448
AgeI	ACCGGT	1 cut(s)	515
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	4 cut(s)	300, 488, 528, 686
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AloI	GAACNNNNNNTCC	2 cut(s)	461, 493
AluBI	AGCT	9 cut(s)	58, 293, 397, 700, 756, 766, 825, 877, 937
AluI	AGCT	9 cut(s)	58, 293, 397, 700, 756, 766, 825, 877, 937
AlwI	GGATC	2 cut(s)	773, 786
AlwNI	CAGNNNCTG	1 cut(s)	724
Ama87I	CYCGRG	3 cut(s)	246, 398, 548
ApeKI	GCWGC	5 cut(s)	290, 388, 436, 454, 874
ApoI	RAATTY	1 cut(s)	543
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AsiGI	ACCGGT	1 cut(s)	515
AspLEI	GCGC	7 cut(s)	424, 441, 454, 526, 528, 649, 712
AspS9I	GGNCC	4 cut(s)	249, 304, 601, 616
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	5 cut(s)	91, 124, 199, 475, 781
AvaI	CYCGRG	3 cut(s)	246, 398, 548
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	5 cut(s)	302, 400, 448, 466, 886
BccI	CCATC	4 cut(s)	200, 499, 592, 896
BceAI	ACGGC	3 cut(s)	347, 421, 442
BciT130I	CCWGG	4 cut(s)	302, 490, 530, 688
BclI	TGATCA	1 cut(s)	627
BcnI	CCSGG	2 cut(s)	247, 248
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	3 cut(s)	386, 434, 725
BfoI	RGCGCY	3 cut(s)	425, 442, 650
BglI	GCCNNNNNGGC	1 cut(s)	683
BisI	GCNGC	9 cut(s)	189, 291, 389, 437, 447, 450, 455, 635, 875
BlsI	GCNGC	9 cut(s)	190, 292, 390, 438, 448, 451, 456, 636, 876
Bme1390I	CCNGG	6 cut(s)	247, 248, 302, 490, 530, 688
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	3 cut(s)	246, 398, 548
BmgT120I	GGNCC	4 cut(s)	249, 304, 601, 616
BmiI	GGNNCC	2 cut(s)	349, 780
BmrFI	CCNGG	6 cut(s)	247, 248, 302, 490, 530, 688
BmsI	GCATC	1 cut(s)	733
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	359, 851
BpuMI	CCSGG	2 cut(s)	247, 248
BsaHI	GRCGYC	3 cut(s)	204, 360, 369
BsaJI	CCNNGG	8 cut(s)	183, 246, 301, 343, 489, 678, 687, 849
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 461, 491, 731, 761
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 302, 448
Bse118I	RCCGGY	2 cut(s)	265, 515
BseBI	CCWGG	4 cut(s)	302, 490, 530, 688
BseDI	CCNNGG	8 cut(s)	183, 246, 301, 343, 489, 678, 687, 849
BseGI	GGATG	6 cut(s)	23, 38, 192, 697, 748, 907
BseLI	CCNNNNNNNGG	3 cut(s)	247, 302, 448
BseMII	CTCAG	1 cut(s)	488
BsePI	GCGCGC	1 cut(s)	524
BseRI	GAGGAG	8 cut(s)	19, 22, 25, 230, 656, 677, 680, 857
BseXI	GCAGC	5 cut(s)	302, 400, 448, 466, 886
Bsh1236I	CGCG	2 cut(s)	446, 526
BshTI	ACCGGT	1 cut(s)	515
BsiHKCI	CYCGRG	3 cut(s)	246, 398, 548
BsiSI	CCGG	4 cut(s)	247, 266, 516, 609
BslI	CCNNNNNNNGG	3 cut(s)	247, 302, 448
BsmI	GAATGC	1 cut(s)	592
BsoBI	CYCGRG	3 cut(s)	246, 398, 548
Bsp143I	GATC	2 cut(s)	627, 778
BspCNI	CTCAG	1 cut(s)	489
BspFNI	CGCG	2 cut(s)	446, 526
BspLI	GGNNCC	2 cut(s)	349, 780
BspMAI	CTGCAG	3 cut(s)	390, 438, 729
BspPI	GGATC	2 cut(s)	773, 786
BsrBI	CCGCTC	1 cut(s)	606
BsrFI	RCCGGY	2 cut(s)	265, 515
BssAI	RCCGGY	2 cut(s)	265, 515
BssECI	CCNNGG	8 cut(s)	183, 246, 301, 343, 489, 678, 687, 849
BssHII	GCGCGC	1 cut(s)	524
BssMI	GATC	2 cut(s)	627, 778
BssNI	GRCGYC	3 cut(s)	204, 360, 369
BssT1I	CCWWGG	3 cut(s)	183, 678, 849
Bst2UI	CCWGG	4 cut(s)	302, 490, 530, 688
Bst4CI	ACNGT	3 cut(s)	217, 564, 720
Bst6I	CTCTTC	3 cut(s)	50, 93, 235
BstACI	GRCGYC	3 cut(s)	204, 360, 369
BstC8I	GCNNGC	4 cut(s)	267, 526, 651, 827
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	6 cut(s)	23, 38, 192, 697, 748, 907
BstFNI	CGCG	2 cut(s)	446, 526
BstH2I	RGCGCY	3 cut(s)	425, 442, 650
BstHHI	GCGC	7 cut(s)	424, 441, 454, 526, 528, 649, 712
BstKTI	GATC	2 cut(s)	630, 781
BstMBI	GATC	2 cut(s)	627, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 368, 388, 394, 683, 880
BstNI	CCWGG	4 cut(s)	302, 490, 530, 688
BstSCI	CCNGG	6 cut(s)	245, 246, 300, 488, 528, 686
BstSFI	CTRYAG	3 cut(s)	386, 434, 725
BstUI	CGCG	2 cut(s)	446, 526
BstV1I	GCAGC	5 cut(s)	302, 400, 448, 466, 886
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
BtsCI	GGATG	6 cut(s)	23, 38, 192, 697, 748, 907
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	560, 630
Cac8I	GCNNGC	4 cut(s)	267, 526, 651, 827
CaiI	CAGNNNCTG	1 cut(s)	724
CfoI	GCGC	7 cut(s)	424, 441, 454, 526, 528, 649, 712
Cfr10I	RCCGGY	2 cut(s)	265, 515
Cfr13I	GGNCC	4 cut(s)	249, 304, 601, 616
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	3 cut(s)	193, 368, 377
CspAI	ACCGGT	1 cut(s)	515
CviAII	CATG	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	2 cut(s)	629, 780
DpnII	GATC	2 cut(s)	627, 778
DraIII	CACNNNGTG	1 cut(s)	625
EaeI	YGGCCR	2 cut(s)	267, 486
Eam1104I	CTCTTC	3 cut(s)	50, 93, 235
EarI	CTCTTC	3 cut(s)	50, 93, 235
EciI	GGCGGA	1 cut(s)	674
Eco130I	CCWWGG	3 cut(s)	183, 678, 849
Eco147I	AGGCCT	2 cut(s)	575, 796
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	446, 775
Eco88I	CYCGRG	3 cut(s)	246, 398, 548
EcoRII	CCWGG	4 cut(s)	300, 488, 528, 686
EcoT14I	CCWWGG	3 cut(s)	183, 678, 849
ErhI	CCWWGG	3 cut(s)	183, 678, 849
FaeI	CATG	1 cut(s)	487
FaiI	YATR	1 cut(s)	485
FatI	CATG	1 cut(s)	483
FauI	CCCGC	2 cut(s)	264, 270
FbaI	TGATCA	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	9 cut(s)	189, 291, 389, 437, 447, 450, 455, 635, 875
FokI	GGATG	6 cut(s)	10, 25, 179, 704, 755, 914
Fsp4HI	GCNGC	9 cut(s)	189, 291, 389, 437, 447, 450, 455, 635, 875
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	7 cut(s)	423, 440, 453, 525, 527, 648, 711
GluI	GCNGC	9 cut(s)	189, 291, 389, 437, 447, 450, 455, 635, 875
GsuI	CTGGAG	1 cut(s)	659
HaeII	RGCGCY	3 cut(s)	425, 442, 650
HapII	CCGG	4 cut(s)	247, 266, 516, 609
HgaI	GACGC	3 cut(s)	193, 368, 377
HhaI	GCGC	7 cut(s)	424, 441, 454, 526, 528, 649, 712
Hin1I	GRCGYC	3 cut(s)	204, 360, 369
Hin1II	CATG	1 cut(s)	487
Hin6I	GCGC	7 cut(s)	422, 439, 452, 524, 526, 647, 710
HinP1I	GCGC	7 cut(s)	422, 439, 452, 524, 526, 647, 710
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	4 cut(s)	430, 551, 556, 930
HpaII	CCGG	4 cut(s)	247, 266, 516, 609
HphI	GGTGA	5 cut(s)	91, 124, 199, 475, 781
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	3 cut(s)	337, 358, 498
Hpy188III	TCNNGA	5 cut(s)	400, 548, 583, 927, 943
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	5 cut(s)	362, 368, 371, 419, 463
HpyAV	CCTTC	2 cut(s)	93, 766
HpyCH4III	ACNGT	3 cut(s)	217, 564, 720
HpyCH4V	TGCA	3 cut(s)	388, 436, 727
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 368, 388, 394, 683, 880
HpyF3I	CTNAG	1 cut(s)	497
Hsp92I	GRCGYC	3 cut(s)	204, 360, 369
Hsp92II	CATG	1 cut(s)	487
HspAI	GCGC	7 cut(s)	422, 439, 452, 524, 526, 647, 710
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	2 cut(s)	627, 778
LmnI	GCTCC	6 cut(s)	298, 353, 387, 611, 853, 945
Lsp1109I	GCAGC	5 cut(s)	302, 400, 448, 466, 886
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	130, 205, 463
MalI	GATC	2 cut(s)	629, 780
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	2 cut(s)	627, 778
MboII	GAAGA	9 cut(s)	37, 80, 211, 222, 293, 296, 439, 742, 898
MflI	RGATCY	1 cut(s)	778
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	3 cut(s)	50, 543, 955
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	2 cut(s)	375, 381
Mox20I	TGGCCA	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	488
MspI	CCGG	4 cut(s)	247, 266, 516, 609
MspR9I	CCNGG	6 cut(s)	247, 248, 302, 490, 530, 688
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	4 cut(s)	302, 490, 530, 688
MvnI	CGCG	2 cut(s)	446, 526
MwoI	GCNNNNNNNGC	6 cut(s)	188, 368, 388, 394, 683, 880
NaeI	GCCGGC	1 cut(s)	267
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	2 cut(s)	627, 778
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	2 cut(s)	349, 780
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	3 cut(s)	130, 205, 463
PaeR7I	CTCGAG	2 cut(s)	398, 548
PauI	GCGCGC	1 cut(s)	524
PceI	AGGCCT	2 cut(s)	575, 796
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 405, 411
PctI	GAATGC	1 cut(s)	592
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	430, 556, 930
PflFI	GACNNNGTC	1 cut(s)	362
PinAI	ACCGGT	1 cut(s)	515
PkrI	GCNGC	9 cut(s)	190, 292, 390, 438, 448, 451, 456, 636, 876
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	4 cut(s)	300, 488, 528, 686
PspGI	CCWGG	4 cut(s)	300, 488, 528, 686
PspN4I	GGNNCC	2 cut(s)	349, 780
PspPI	GGNCC	4 cut(s)	249, 304, 601, 616
PstI	CTGCAG	3 cut(s)	390, 438, 729
PstNI	CAGNNNCTG	1 cut(s)	724
PsuI	RGATCY	1 cut(s)	778
PsyI	GACNNNGTC	1 cut(s)	362
PteI	GCGCGC	1 cut(s)	524
SalI	GTCGAC	1 cut(s)	365
SatI	GCNGC	9 cut(s)	189, 291, 389, 437, 447, 450, 455, 635, 875
Sau3AI	GATC	2 cut(s)	627, 778
Sau96I	GGNCC	4 cut(s)	249, 304, 601, 616
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	6 cut(s)	247, 248, 302, 490, 530, 688
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	3 cut(s)	386, 434, 725
SfiI	GGCCNNNNNGGCC	1 cut(s)	683
Sfr274I	CTCGAG	2 cut(s)	398, 548
SgrDI	CGTCGACG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	601
SlaI	CTCGAG	2 cut(s)	398, 548
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	4 cut(s)	374, 398, 548, 830
SmoI	CTYRAG	4 cut(s)	374, 398, 548, 830
SrfI	GCCCGGGC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	50, 543, 955
SseBI	AGGCCT	2 cut(s)	575, 796
SspMI	CTAG	1 cut(s)	17
StuI	AGGCCT	2 cut(s)	575, 796
StyD4I	CCNGG	6 cut(s)	245, 246, 300, 488, 528, 686
StyI	CCWWGG	3 cut(s)	183, 678, 849
TaaI	ACNGT	3 cut(s)	217, 564, 720
TaqI	TCGA	7 cut(s)	366, 399, 537, 549, 554, 582, 926
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	50, 543, 955
TauI	GCSGC	4 cut(s)	191, 449, 452, 637
TfiI	GAWTC	3 cut(s)	430, 556, 930
TscAI	CASTG	2 cut(s)	567, 630
TseFI	GTSAC	3 cut(s)	130, 205, 463
TseI	GCWGC	5 cut(s)	290, 388, 436, 454, 874
Tsp45I	GTSAC	3 cut(s)	130, 205, 463
TspDTI	ATGAA	3 cut(s)	17, 327, 929
TspGWI	ACGGA	3 cut(s)	83, 318, 482
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	567, 630
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	1 cut(s)	543
XhoI	CTCGAG	2 cut(s)	398, 548
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.