Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

33275622 .. 33275912

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGGAGACGAATCCGCTGTCGTTTGAGGCCTTGTTTGAGAACGCGTTACTCAGGGACCGCTCCGGTGAGGGCCACGCGGTGATCAGGCGGCTGGAGGAGGCGCTGAGGGTGGCGGAGGAGGAGAACAAGGTGAAGGAAGCGAGGGATGTGAAGCTGAAAATGGCGCAGATACAGTTCTTGCAGAAGAATGTGGAGGATGCTTTGAGTAGCTACAACGAGTTGGTGAAGGAGGATCCTAAGGACTTTAGGCCTTATTTTTTGCAGGGGAATGATTTACAGCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

97

Amino Acids

11.07

Weight (kDa)

4.91

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	63
AccII	CGCG	2 cut(s)	47, 80
AciI	CCGC	5 cut(s)	17, 61, 80, 91, 116
AclWI	GGATC	2 cut(s)	230, 243
AdeI	CACNNNGTG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	45
AluBI	AGCT	3 cut(s)	157, 213, 283
AluI	AGCT	3 cut(s)	157, 213, 283
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	230, 243
AoxI	GGCC	3 cut(s)	30, 73, 251
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspLEI	GCGC	2 cut(s)	106, 169
AspS9I	GGNCC	2 cut(s)	58, 73
AsuHPI	GGTGA	4 cut(s)	80, 94, 145, 238
AvaII	GGWCC	1 cut(s)	58
AxyI	CCTNAGG	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	2
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	58, 73
BmiI	GGNNCC	2 cut(s)	59, 237
BmsI	GCATC	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	65
Bse21I	CCTNAGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	154, 205
BseMII	CTCAG	2 cut(s)	67, 98
BseRI	GAGGAG	3 cut(s)	113, 134, 137
Bsh1236I	CGCG	2 cut(s)	47, 80
BshFI	GGCC	3 cut(s)	32, 75, 253
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	2
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	32, 75, 253
Bsp143I	GATC	2 cut(s)	84, 235
BspACI	CCGC	5 cut(s)	17, 61, 80, 91, 116
BspANI	GGCC	3 cut(s)	32, 75, 253
BspCNI	CTCAG	2 cut(s)	66, 99
BspFNI	CGCG	2 cut(s)	47, 80
BspLI	GGNNCC	2 cut(s)	59, 237
BspPI	GGATC	2 cut(s)	230, 243
BsrBI	CCGCTC	1 cut(s)	63
BssMI	GATC	2 cut(s)	84, 235
Bst4CI	ACNGT	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	3 cut(s)	53, 107, 240
BstF5I	GGATG	2 cut(s)	154, 205
BstFNI	CGCG	2 cut(s)	47, 80
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	106, 169
BstKTI	GATC	2 cut(s)	87, 238
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	84, 235
BstUI	CGCG	2 cut(s)	47, 80
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	32, 75, 253
BtsCI	GGATG	2 cut(s)	154, 205
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	2 cut(s)	106, 169
Cfr13I	GGNCC	2 cut(s)	58, 73
CviJI	RGCY	7 cut(s)	32, 75, 94, 157, 213, 253, 283
CviKI_1	RGCY	7 cut(s)	32, 75, 94, 157, 213, 253, 283
DdeI	CTNAG	3 cut(s)	53, 107, 240
DpnI	GATC	2 cut(s)	86, 237
DpnII	GATC	2 cut(s)	84, 235
DraIII	CACNNNGTG	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	131
Eco147I	AGGCCT	2 cut(s)	32, 253
Eco47I	GGWCC	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	2
FaqI	GGGAC	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	161, 212
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	2 cut(s)	105, 168
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	32, 75, 253
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	2 cut(s)	106, 169
Hin6I	GCGC	2 cut(s)	104, 167
HinP1I	GCGC	2 cut(s)	104, 167
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	4 cut(s)	80, 94, 145, 238
HpyAV	CCTTC	2 cut(s)	130, 223
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	184, 265
HpyF3I	CTNAG	3 cut(s)	53, 107, 240
HspAI	GCGC	2 cut(s)	104, 167
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	84, 235
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	40, 73, 79, 80, 251
LweI	GCATC	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	86, 237
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	2 cut(s)	84, 235
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	235
MluI	ACGCGT	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	66
MvnI	CGCG	2 cut(s)	47, 80
NdeII	GATC	2 cut(s)	84, 235
NlaIV	GGNNCC	2 cut(s)	59, 237
PceI	AGGCCT	2 cut(s)	32, 253
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	59, 237
PspPI	GGNCC	2 cut(s)	58, 73
PsuI	RGATCY	1 cut(s)	235
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	84, 235
Sau96I	GGNCC	2 cut(s)	58, 73
SetI	ASST	4 cut(s)	135, 159, 215, 285
SfaNI	GCATC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	58
SseBI	AGGCCT	2 cut(s)	32, 253
SsiI	CCGC	5 cut(s)	17, 61, 80, 91, 116
StuI	AGGCCT	2 cut(s)	32, 253
TaaI	ACNGT	1 cut(s)	177
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.