Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038231.1

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 396

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038231.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 395 bp

atgaactcctcaactctagcctcctcctcctcatccctcttccaattcaagctcacttccaccaaacccacccaaccttctcttctccgttttgcccctccacattcccaaaatgccctcaaagtcaccgcctccaccaacccccactccattctccaaaccgccaagcaatacgccaaggccgccatcctcatcggcgtcaccgccaccgtcttccacaactcttccaaactcctcgcccgggccgacccgcccccgccggccacattgaccgaagaagaagaagaagcagctcccaaccagggccaaaatgagacccaagcctctccgttatccgatttcctcggctccaactccgacgccgtcgacgccctcaagtcgctcctgcagcagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

131

Amino Acids

13.85

Weight (kDa)

6.26

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	6 cut(s)	129, 162, 183, 204, 251, 257
AcoI	YGGCCR	1 cut(s)	261
AcyI	GRCGYC	3 cut(s)	198, 360, 369
AfiI	CCNNNNNNNGG	2 cut(s)	241, 302
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	52, 293
AluI	AGCT	2 cut(s)	52, 293
Alw26I	GTCTC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	4 cut(s)	180, 243, 261, 304
ApeKI	GCWGC	2 cut(s)	290, 388
AspS9I	GGNCC	2 cut(s)	243, 304
AsuC2I	CCSGG	2 cut(s)	241, 242
AsuHPI	GGTGA	2 cut(s)	118, 193
AvaI	CYCGRG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	2 cut(s)	241, 242
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	386
BisI	GCNGC	3 cut(s)	183, 291, 389
BlsI	GCNGC	3 cut(s)	184, 292, 390
Bme1390I	CCNGG	3 cut(s)	241, 242, 302
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	243, 304
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	3 cut(s)	241, 242, 302
BpiI	GAAGAC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	241, 242
BsaHI	GRCGYC	3 cut(s)	198, 360, 369
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	177, 240, 301, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 302
Bse118I	RCCGGY	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	4 cut(s)	177, 240, 301, 343
BseGI	GGATG	2 cut(s)	32, 186
BseLI	CCNNNNNNNGG	2 cut(s)	241, 302
BseRI	GAGGAG	4 cut(s)	13, 16, 19, 224
BseXI	GCAGC	1 cut(s)	302
BshFI	GGCC	4 cut(s)	182, 245, 263, 306
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	241, 260
BslI	CCNNNNNNNGG	2 cut(s)	241, 302
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	4 cut(s)	182, 245, 263, 306
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	240
BspACI	CCGC	6 cut(s)	129, 162, 183, 204, 251, 257
BspANI	GGCC	4 cut(s)	182, 245, 263, 306
BspLI	GGNNCC	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	177, 240, 301, 343
BssNI	GRCGYC	3 cut(s)	198, 360, 369
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	3 cut(s)	44, 87, 229
BstACI	GRCGYC	3 cut(s)	198, 360, 369
BstC8I	GCNNGC	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	32, 186
BstMAI	GTCTC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 368, 388
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	239, 240, 300
BstSFI	CTRYAG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	182, 245, 263, 306
BtsCI	GGATG	2 cut(s)	32, 186
Cac8I	GCNNGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	243, 304
Cfr9I	CCCGGG	1 cut(s)	240
CseI	GACGC	3 cut(s)	187, 368, 377
CviJI	RGCY	9 cut(s)	20, 52, 182, 245, 263, 293, 306, 323, 348
CviKI_1	RGCY	9 cut(s)	20, 52, 182, 245, 263, 293, 306, 323, 348
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	44, 87, 229
EarI	CTCTTC	3 cut(s)	44, 87, 229
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FauI	CCCGC	2 cut(s)	258, 264
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	183, 291, 389
FokI	GGATG	2 cut(s)	19, 173
Fsp4HI	GCNGC	3 cut(s)	183, 291, 389
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	3 cut(s)	183, 291, 389
HaeIII	GGCC	4 cut(s)	182, 245, 263, 306
HapII	CCGG	2 cut(s)	241, 260
HgaI	GACGC	3 cut(s)	187, 368, 377
Hin1I	GRCGYC	3 cut(s)	198, 360, 369
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	241, 260
HphI	GGTGA	2 cut(s)	118, 193
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	337, 358
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	3 cut(s)	362, 368, 371
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 368, 388
Hsp92I	GRCGYC	3 cut(s)	198, 360, 369
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
LmnI	GCTCC	3 cut(s)	298, 353, 387
LpnPI	CCDG	4 cut(s)	254, 273, 287, 314
Lsp1109I	GCAGC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	124, 199
MboII	GAAGA	8 cut(s)	31, 74, 205, 216, 287, 290, 293, 296
MluCI	AATT	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	375, 381
MroNI	GCCGGC	1 cut(s)	259
MspI	CCGG	2 cut(s)	241, 260
MspR9I	CCNGG	3 cut(s)	241, 242, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	182, 368, 388
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	2 cut(s)	241, 242
NgoMIV	GCCGGC	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	124, 199
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	184, 292, 390
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	243, 304
PstI	CTGCAG	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	362
SalI	GTCGAC	1 cut(s)	365
SatI	GCNGC	3 cut(s)	183, 291, 389
Sau96I	GGNCC	2 cut(s)	243, 304
ScrFI	CCNGG	3 cut(s)	241, 242, 302
SetI	ASST	3 cut(s)	54, 79, 295
SfcI	CTRYAG	1 cut(s)	386
SgrDI	CGTCGACG	1 cut(s)	365
SmaI	CCCGGG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SrfI	GCCCGGGC	1 cut(s)	242
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	6 cut(s)	129, 162, 183, 204, 251, 257
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	239, 240, 300
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	44
TauI	GCSGC	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	124, 199
TseI	GCWGC	2 cut(s)	290, 388
Tsp45I	GTSAC	2 cut(s)	124, 199
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	77, 318
TspMI	CCCGGG	1 cut(s)	240
Tth111I	GACNNNGTC	1 cut(s)	362
XmaI	CCCGGG	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.