Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003001.1

Orthogroup ID

OG0007638

Physical Location & Seq

Genomic Coordinates Reverse (-)

85872 .. 86340

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003001.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ctgttcatattgggtaagacgtacgaagacttacccaaagacaaaagcttactcactaagcttccacaagtcttccaaacctctccgttgtccgatttccacggctccaactccgacgccgccgagtcgcttctgcagcagaagctcgagagcggcgagcacgccaggattttgaggaaattctctaatcgaatccactgtcggccacgccttgatcaggtggcggaggaggagaacaaggacagggatgtgaagctgataatggcgcagatacagttcctgcagaagaatgtggaggatgcgttgagtagctacaatgagttggtcaaggaggatcccaaagacttccggccttattttcgtaggggaatgatttacagcttgcttgaggggaatgaagaggccaaaggagcagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

139

Amino Acids

16.03

Weight (kDa)

5.97

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18420
fragaria_vesca	FvH4_4g36260 FvH4_4g36290
malus_domestica	MD04G1118800.v1.1 MD13G1010600.v1.1 MD16G1008500.v1.1
prunus_persica	Prupe.1G342400_v2.0.a1
pyrus_communis	pycom04g14370 pycom09g13490 pycom13g00870 pycom16g00830
rosa_chinensis	RchiOBHm_Chr4g0446041
rosa_laevigata	RLG00000005697
rosa_multiflora	Rmu_sc0003001.1_g000009 Rmu_sc0038231.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386420 Rroxscaffold_5G00386460
rosa_samantha	Rh4AG428800 Rh4BG438000 Rh4BG438300 Rh4CG455000 Rh4CG455400 Rh4CG455600
rosa_wichuraiana	Rw4G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	3 cut(s)	120, 153, 224
AclWI	GGATC	2 cut(s)	329, 342
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	6 cut(s)	48, 61, 145, 256, 312, 381
AluI	AGCT	6 cut(s)	48, 61, 145, 256, 312, 381
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	329, 342
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	203, 350, 402
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
AspLEI	GCGC	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	33, 64
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	214
BfmI	CTRYAG	2 cut(s)	134, 281
BisI	GCNGC	3 cut(s)	120, 137, 154
BlsI	GCNGC	3 cut(s)	121, 138, 155
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	106, 336
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	33, 64
BpuEI	CTTGAG	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	253, 304
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	242, 245
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	3 cut(s)	205, 352, 404
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	349
BsiWI	CGTACG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	3 cut(s)	205, 352, 404
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	214, 334
BspACI	CCGC	3 cut(s)	120, 153, 224
BspANI	GGCC	3 cut(s)	205, 352, 404
BspLI	GGNNCC	2 cut(s)	106, 336
BspMAI	CTGCAG	2 cut(s)	138, 285
BspPI	GGATC	2 cut(s)	329, 342
BsrBI	CCGCTC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	214, 334
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	200, 276
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	158, 162, 383
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	253, 304
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	2 cut(s)	217, 337
BstMBI	GATC	2 cut(s)	214, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 142, 410
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	134, 281
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	33, 64
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	205, 352, 404
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	253, 304
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	3 cut(s)	158, 162, 383
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	268
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	22
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	216, 336
DpnII	GATC	2 cut(s)	214, 334
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	164
FaiI	YATR	1 cut(s)	8
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	120, 137, 154
FokI	GGATG	2 cut(s)	260, 311
Fsp4HI	GCNGC	3 cut(s)	120, 137, 154
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	120, 137, 154
HaeIII	GGCC	3 cut(s)	205, 352, 404
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HindIII	AAGCTT	2 cut(s)	46, 59
HinfI	GANTC	2 cut(s)	125, 192
HpaII	CCGG	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	200, 276
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	136, 283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 142, 410
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	117
HspAI	GCGC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	214, 334
LmnI	GCTCC	2 cut(s)	110, 410
LpnPI	CCDG	6 cut(s)	151, 178, 203, 229, 293, 362
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	1 cut(s)	20
MalI	GATC	2 cut(s)	216, 336
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	214, 334
MboII	GAAGA	4 cut(s)	38, 64, 298, 410
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	132, 138
MnlI	CCTC	8 cut(s)	91, 168, 220, 223, 289, 325, 382, 394
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	136, 142, 410
NdeII	GATC	2 cut(s)	214, 334
NlaIV	GGNNCC	2 cut(s)	106, 336
NmeAIII	GCCGAG	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	192
Pfl23II	CGTACG	1 cut(s)	21
PkrI	GCNGC	3 cut(s)	121, 138, 155
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspLI	CGTACG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	106, 336
PstI	CTGCAG	2 cut(s)	138, 285
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SatI	GCNGC	3 cut(s)	120, 137, 154
Sau3AI	GATC	2 cut(s)	214, 334
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	9 cut(s)	23, 50, 63, 83, 147, 222, 258, 314, 383
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	134, 281
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	146, 386
SmoI	CTYRAG	2 cut(s)	146, 386
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	3 cut(s)	120, 153, 224
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	200, 276
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	147, 190
TasI	AATT	1 cut(s)	179
TauI	GCSGC	2 cut(s)	122, 156
TfiI	GAWTC	1 cut(s)	192
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.