Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Reverse (-)

7130586 .. 7131327

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTCGTAGAGATGTTTCAACTTCTATTCACAATCGTGACAATCGAAGCCGTCCTGATATTAACACTCGGGTTCGGGACTCCAGCGAGAAGAGTGGTGGTGAAACTGCTAGACCTATCAAAGCAAGGTCGAGCACCACTGGTTGCGAAAACGGTCGCAGCCACTATGCTTGTGTTGTTTGGCTCGGTTATGTTCAGCACTATTCAAATCCACACAAGGGTCTCTGAATCTGGTGGTGTAGCTAACTCGACCGATCAAGTCATGTTTGCCAATCGCCTCCTCGAAGCTTTCCTCATGGGGACTGTCTTGTTCTTGGCCATGGTTATAGATAGAATGCATTACTACACAAGAGAGCTTCAAATCACAAGAAGAAACTTGGAGATTGCTGTAAAGAAGGGCAAAACCGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0002376 GO:0002474 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005829 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019882 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0030176 GO:0031090 GO:0031224 GO:0031226 GO:0031227 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048002 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071556 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098552 GO:0098553 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244

KEGG Pathways

Metabolic & Signaling

ko04141 ko04150 ko05165 map04141 map04150 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

137

Amino Acids

15.2

Weight (kDa)

10.19

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgeI	ACCGGT	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	20, 206, 359
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	242, 287, 355
AluI	AGCT	3 cut(s)	242, 287, 355
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	158
AsiGI	ACCGGT	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	170
Bsh1285I	CGRYCG	2 cut(s)	156, 252
BshFI	GGCC	1 cut(s)	317
BshTI	ACCGGT	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	156, 252
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	2 cut(s)	91, 313
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	91, 313
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	253
Bsp19I	CCATGG	1 cut(s)	318
BspANI	GGCC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	154, 304
Bst6I	CTCTTC	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	318
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	253
BstMCI	CGRYCG	2 cut(s)	156, 252
BstV1I	GCAGC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	404
CspAI	ACCGGT	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	3 cut(s)	262, 295, 319
CviJI	RGCY	7 cut(s)	50, 161, 183, 242, 287, 317, 355
CviKI_1	RGCY	7 cut(s)	50, 161, 183, 242, 287, 317, 355
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	265, 298, 322
FaiI	YATR	6 cut(s)	167, 191, 263, 296, 320, 326
FaqI	GGGAC	2 cut(s)	91, 313
FatI	CATG	3 cut(s)	261, 294, 318
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	3 cut(s)	265, 298, 322
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	2 cut(s)	79, 227
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	3 cut(s)	37, 55, 76
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	2 cut(s)	154, 304
HpyCH4V	TGCA	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	265, 298, 322
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	4 cut(s)	68, 96, 125, 216
Lsp1109I	GCAGC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	102, 381
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	317
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	287, 290, 302
Mox20I	TGGCCA	1 cut(s)	317
Mph1103I	ATGCAT	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	2 cut(s)	62, 412
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	317
MspI	CCGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	265, 298, 322
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	339
OliI	CACNNNNGTG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	62, 412
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	5 cut(s)	117, 130, 244, 289, 357
SmiMI	CAYNNNNRTG	1 cut(s)	35
SspMI	CTAG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	154, 304
TaqI	TCGA	4 cut(s)	45, 130, 248, 282
TaqII	GACCGA	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	62, 412
Tru9I	TTAA	2 cut(s)	62, 412
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	37
TspRI	CASTG	1 cut(s)	144
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.