Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002719.1

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Reverse (-)

18697 .. 18993

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002719.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggtattgattctgagccttctatttagaagcactttgaggcagttggtgatcatgggattggatcgttcgaagcagggacgagggccattggtggtgaagagtgtgggaggaaccattctcgtcttctttagctctaccatatacagtgtgttcagtgttcagaagaaacgctcaattgatgcaggctttgttaatccaactgatgaggttcttatggcatcccgtctattagaagcatctcttataggtgatgatcatcattcatcaattaattatatccaaataactcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

10.83

Weight (kDa)

9.69

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	72
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	86
AseI	ATTAAT	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	61, 109, 263
AsuII	TTCGAA	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	118
BclI	TGATCA	2 cut(s)	51, 256
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	3 cut(s)	172, 230, 248
BpiI	GAAGAC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	258
BseGI	GGATG	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	51, 64, 256
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	71
BssMI	GATC	3 cut(s)	51, 64, 256
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	3 cut(s)	54, 67, 259
BstMBI	GATC	3 cut(s)	51, 64, 256
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	154, 163
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	86
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	4 cut(s)	18, 88, 135, 189
CviKI_1	RGCY	4 cut(s)	18, 88, 135, 189
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	3 cut(s)	53, 66, 258
DpnII	GATC	3 cut(s)	51, 64, 256
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	58
FaiI	YATR	6 cut(s)	56, 143, 145, 218, 248, 279
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	54
FbaI	TGATCA	2 cut(s)	51, 256
FokI	GGATG	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	3 cut(s)	61, 109, 263
Hpy188I	TCNGA	2 cut(s)	15, 165
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	58
Ksp22I	TGATCA	2 cut(s)	51, 256
Kzo9I	GATC	3 cut(s)	51, 64, 256
LpnPI	CCDG	2 cut(s)	62, 171
LweI	GCATC	3 cut(s)	172, 230, 248
MalI	GATC	3 cut(s)	53, 66, 258
MboI	GATC	3 cut(s)	51, 64, 256
MboII	GAAGA	3 cut(s)	112, 118, 178
MfeI	CAATTG	1 cut(s)	177
MluCI	AATT	3 cut(s)	177, 270, 274
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	33, 77, 104, 202
MseI	TTAA	2 cut(s)	195, 273
MunI	CAATTG	1 cut(s)	177
NdeII	GATC	3 cut(s)	51, 64, 256
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	195, 273
Sau3AI	GATC	3 cut(s)	51, 64, 256
Sau96I	GGNCC	1 cut(s)	86
SetI	ASST	3 cut(s)	137, 213, 253
SfaNI	GCATC	3 cut(s)	172, 230, 248
SfuI	TTCGAA	1 cut(s)	71
SgeI	CNNG	6 cut(s)	67, 89, 95, 134, 198, 237
Sse9I	AATT	3 cut(s)	177, 270, 274
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	177, 270, 274
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	195, 273
Tru9I	TTAA	2 cut(s)	195, 273
TscAI	CASTG	2 cut(s)	154, 163
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	154, 163
VspI	ATTAAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.