Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Reverse (-)

27093926 .. 27095192

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1197900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATTCTAATTTTGTTTACACTTGTAACCCCTCTGAGGAAGTTGGTGATCGTGGGGTTAGATCGATCGAAGCAAGGACGGGGGCCATTGGTGGTGAAGAGCGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCCACCATATATAGTGTATTCAGTGTTCAAAAACGTTTATCAGAGGCAGGCTTTGTCAATCCGACAGACGAGGTTCTTATGGCACATCGTCTCCTGGAAGCATCTCTCATAGGGTTTTCCCTATTCCTGGCAATGATTATAGATAGACTACACTACTATATCAAAGAGCTCCATCTGCTACGAGAACGCGTCGAAGAAGTGAAGAATCTGAAAAAGGATTATGAGCACAAGAAATCTACTGATCCTGCAGAAGTGAAGAAGGCAACACAAAGGATCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

138

Amino Acids

15.6

Weight (kDa)

9.77

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	2 cut(s)	368, 413
AfiI	CCNNNNNNNGG	2 cut(s)	36, 259
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	225, 258
AluBI	AGCT	3 cut(s)	132, 301, 411
AluI	AGCT	3 cut(s)	132, 301, 411
Alw21I	GWGCWC	2 cut(s)	303, 360
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	368, 413
AoxI	GGCC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	58, 106
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	303, 360
BccI	CCATC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	227, 260
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	227, 260
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	84, 112
BmrFI	CCNGG	2 cut(s)	227, 260
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 259
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	227, 260
BseCI	ATCGAT	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	36, 259
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	303, 360
BslI	CCNNNNNNNGG	2 cut(s)	36, 259
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	303, 360
Bsp143I	GATC	5 cut(s)	48, 61, 65, 373, 405
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	84, 112
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	2 cut(s)	368, 413
BspQI	GCTCTTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	270
BssMI	GATC	5 cut(s)	48, 61, 65, 373, 405
Bst2UI	CCWGG	2 cut(s)	227, 260
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	5 cut(s)	51, 64, 68, 376, 408
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	5 cut(s)	48, 61, 65, 373, 405
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	2 cut(s)	227, 260
BstSCI	CCNGG	2 cut(s)	225, 258
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	64
CseI	GACGC	1 cut(s)	310
CviJI	RGCY	5 cut(s)	85, 132, 183, 301, 411
CviKI_1	RGCY	5 cut(s)	85, 132, 183, 301, 411
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	50, 63, 67, 375, 407
DpnII	GATC	5 cut(s)	48, 61, 65, 373, 405
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	225, 258
EcoT38I	GRGCYC	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	227
FaiI	YATR	8 cut(s)	140, 142, 144, 212, 242, 272, 291, 354
FriOI	GRGCYC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	85
HgaI	GACGC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	4, 337
HphI	GGTGA	2 cut(s)	58, 106
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	36, 175, 195, 342
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	48, 61, 65, 373, 405
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	137, 306
LpnPI	CCDG	6 cut(s)	165, 212, 239, 245, 272, 390
LweI	GCATC	1 cut(s)	242
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	5 cut(s)	50, 63, 67, 375, 407
MboI	GATC	5 cut(s)	48, 61, 65, 373, 405
MboII	GAAGA	5 cut(s)	109, 115, 338, 346, 400
MhlI	GDGCHC	2 cut(s)	303, 360
MluCI	AATT	1 cut(s)	9
MluI	ACGCGT	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	30, 42, 101, 169, 196
MspR9I	CCNGG	2 cut(s)	227, 260
MvaI	CCWGG	2 cut(s)	227, 260
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeII	GATC	5 cut(s)	48, 61, 65, 373, 405
NlaIV	GGNNCC	2 cut(s)	84, 112
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	4, 337
PfoI	TCCNGGA	1 cut(s)	225
Ple19I	CGATCG	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	225, 258
PspGI	CCWGG	2 cut(s)	225, 258
PspN4I	GGNNCC	2 cut(s)	84, 112
PspPI	GGNCC	1 cut(s)	83
PsrI	GAACNNNNNNTAC	2 cut(s)	141, 173
PstI	CTGCAG	1 cut(s)	382
PvuI	CGATCG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	92
Sau3AI	GATC	5 cut(s)	48, 61, 65, 373, 405
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	227, 260
SduI	GDGCHC	2 cut(s)	303, 360
SetI	ASST	5 cut(s)	134, 169, 207, 303, 413
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	378
Sse9I	AATT	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	225, 258
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	3 cut(s)	64, 68, 324
TasI	AATT	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	4, 337
TscAI	CASTG	1 cut(s)	160
TspRI	CASTG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.