Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Forward (+)

35203385 .. 35204216

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033998

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTATTGATTCTGAGCCTTCTGTTTAGAAGCCCTTTGAGGCAATTGGTGATCATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATATACAGTGTGTTCAGTGTGCAGAAGAAACACTCAATTGATGCAGGCTTTGTTAATCCCACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGGTTTTCCCTATTCTTGGCACTGATGATAGATAGGCTGCACTACTATATCAAGGAGCTCTATCGACTTAGAAATTACAGGGACGAAGAACTGAAAATGGAATGCAGTGAGCAGAGCAAGATCAGGAAAAGCAGCATGCACGGCACTGCCCCAGTGATAAAAGAAGACATAAGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

143

Amino Acids

16.25

Weight (kDa)

9.59

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	135, 307
AluI	AGCT	2 cut(s)	135, 307
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	286, 381
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	61, 109
AsuII	TTCGAA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	118, 420
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	273, 393
BceAI	ACGGC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	51
BisI	GCNGC	2 cut(s)	287, 382
BlsI	GCNGC	2 cut(s)	288, 383
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	172, 248
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	2 cut(s)	118, 420
Bpu14I	TTCGAA	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	273, 393
BsgI	GTGCAG	2 cut(s)	182, 272
BshFI	GGCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	309
BslFI	GGGAC	2 cut(s)	93, 344
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	93, 344
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	51, 64, 369
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	401
BssMI	GATC	3 cut(s)	51, 64, 369
Bst4CI	ACNGT	2 cut(s)	149, 227
Bst6I	CTCTTC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	187, 386
BstDEI	CTNAG	2 cut(s)	14, 317
BstKTI	GATC	3 cut(s)	54, 67, 372
BstMBI	GATC	3 cut(s)	51, 64, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	273, 393
BstV2I	GAAGAC	2 cut(s)	118, 420
BsuRI	GGCC	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	361, 393
BtsIMutI	CAGTG	7 cut(s)	154, 163, 201, 269, 361, 393, 408
Cac8I	GCNNGC	2 cut(s)	187, 386
Cfr13I	GGNCC	1 cut(s)	86
CviAII	CATG	2 cut(s)	55, 385
CviJI	RGCY	8 cut(s)	18, 33, 88, 135, 189, 286, 307, 425
CviKI_1	RGCY	8 cut(s)	18, 33, 88, 135, 189, 286, 307, 425
DdeI	CTNAG	2 cut(s)	14, 317
DpnI	GATC	3 cut(s)	53, 66, 371
DpnII	GATC	3 cut(s)	51, 64, 369
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	2 cut(s)	58, 388
FaiI	YATR	9 cut(s)	56, 143, 145, 218, 223, 248, 297, 386, 419
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	2 cut(s)	93, 344
FatI	CATG	2 cut(s)	54, 384
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	287, 382
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	287, 382
GluI	GCNGC	2 cut(s)	287, 382
HaeIII	GGCC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	58, 388
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	2 cut(s)	61, 109
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	149, 227
HpyCH4V	TGCA	5 cut(s)	163, 185, 289, 354, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	2 cut(s)	14, 317
Hsp92II	CATG	2 cut(s)	58, 388
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	51, 64, 369
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	5 cut(s)	62, 171, 313, 358, 414
Lsp1109I	GCAGC	2 cut(s)	273, 393
LweI	GCATC	2 cut(s)	172, 248
MalI	GATC	3 cut(s)	53, 66, 371
MboI	GATC	3 cut(s)	51, 64, 369
MboII	GAAGA	5 cut(s)	112, 118, 178, 347, 425
MfeI	CAATTG	2 cut(s)	44, 177
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	3 cut(s)	44, 177, 322
MnlI	CCTC	4 cut(s)	33, 77, 104, 202
MseI	TTAA	1 cut(s)	195
MunI	CAATTG	2 cut(s)	44, 177
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeII	GATC	3 cut(s)	51, 64, 369
NlaIII	CATG	2 cut(s)	58, 388
NlaIV	GGNNCC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	388
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	288, 383
Psp124BI	GAGCTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	287, 382
Sau3AI	GATC	3 cut(s)	51, 64, 369
Sau96I	GGNCC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	3 cut(s)	137, 213, 309
SfaNI	GCATC	2 cut(s)	172, 248
SfuI	TTCGAA	1 cut(s)	71
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	3 cut(s)	44, 177, 322
SstI	GAGCTC	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	149, 227
TaqI	TCGA	2 cut(s)	71, 313
TasI	AATT	3 cut(s)	44, 177, 322
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	7 cut(s)	154, 163, 208, 276, 361, 400, 408
TseI	GCWGC	2 cut(s)	286, 381
TspRI	CASTG	7 cut(s)	154, 163, 208, 276, 361, 400, 408
XceI	RCATGY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.