Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Reverse (-)

57605406 .. 57606653

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCAGTAAAATCATTCAACCAACAAAATAAAAAGATAACCGATCTTTGCTTTCCGGTTGCACTTTATCTATTTGAAGAAATGATTCAAATTTTATTTACACTAGTGTGTGCCGAAATGGTATTGATTCTGAGCCTTCTGTTTAGAAGCCCTTTGAGGCAGTTGGTGATCATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATATACAGTGTGTTCAGTGTGCAGAAGAAACACTCAATTGATGCAGGCTTTGTTAATCCCACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGGTTTTCCCTATTCTTGGCACTGATGATAGATAGGCTGCACTACTATATCAAGGAGCTCCATCGACTTAGAAATTACAGGGAAGAAGAACTGAAAAAGGAATGCAATGAGCAGAGCAAGATCAGGAAAAGCAGCATGCACGGTACTGCCCCAGTGATCAAAAAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

178

Amino Acids

20.44

Weight (kDa)

9.49

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	19, 77, 89
AhlI	ACTAGT	1 cut(s)	103
AleI	CACNNNNGTG	1 cut(s)	106
AluBI	AGCT	2 cut(s)	252, 424
AluI	AGCT	2 cut(s)	252, 424
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	403, 498
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	178, 226
AsuII	TTCGAA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	390, 510
BccI	CCATC	1 cut(s)	435
BclI	TGATCA	2 cut(s)	168, 522
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	2 cut(s)	404, 499
BlsI	GCNGC	2 cut(s)	405, 500
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	289, 365
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	390, 510
BsgI	GTGCAG	2 cut(s)	299, 389
BshFI	GGCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	43, 168, 181, 486, 522
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	518
BssMI	GATC	5 cut(s)	43, 168, 181, 486, 522
Bst4CI	ACNGT	3 cut(s)	266, 344, 509
Bst6I	CTCTTC	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	304, 503
BstDEI	CTNAG	2 cut(s)	131, 434
BstKTI	GATC	5 cut(s)	46, 171, 184, 489, 525
BstMBI	GATC	5 cut(s)	43, 168, 181, 486, 522
BstNSI	RCATGY	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	390, 510
BstV2I	GAAGAC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	205
BtsIMutI	CAGTG	5 cut(s)	271, 280, 318, 386, 525
Cac8I	GCNNGC	2 cut(s)	304, 503
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	2 cut(s)	172, 502
CviJI	RGCY	7 cut(s)	135, 150, 205, 252, 306, 403, 424
CviKI_1	RGCY	7 cut(s)	135, 150, 205, 252, 306, 403, 424
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	2 cut(s)	131, 434
DpnI	GATC	5 cut(s)	45, 170, 183, 488, 524
DpnII	GATC	5 cut(s)	43, 168, 181, 486, 522
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	426
FaeI	CATG	2 cut(s)	175, 505
FaiI	YATR	9 cut(s)	173, 260, 262, 335, 340, 365, 414, 503, 535
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	171, 501
FbaI	TGATCA	2 cut(s)	168, 522
Fnu4HI	GCNGC	2 cut(s)	404, 499
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	2 cut(s)	404, 499
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	2 cut(s)	404, 499
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	2 cut(s)	175, 505
HinfI	GANTC	2 cut(s)	85, 127
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	178, 226
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	490
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	3 cut(s)	266, 344, 509
HpyCH4V	TGCA	6 cut(s)	62, 280, 302, 406, 471, 505
HpyF3I	CTNAG	2 cut(s)	131, 434
Hsp92II	CATG	2 cut(s)	175, 505
Ksp22I	TGATCA	2 cut(s)	168, 522
Kzo9I	GATC	5 cut(s)	43, 168, 181, 486, 522
LmnI	GCTCC	2 cut(s)	421, 429
LpnPI	CCDG	6 cut(s)	69, 179, 288, 430, 475, 531
Lsp1109I	GCAGC	2 cut(s)	390, 510
LweI	GCATC	2 cut(s)	289, 365
MaeI	CTAG	1 cut(s)	104
MalI	GATC	5 cut(s)	45, 170, 183, 488, 524
MboI	GATC	5 cut(s)	43, 168, 181, 486, 522
MboII	GAAGA	6 cut(s)	89, 229, 235, 295, 461, 464
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	3 cut(s)	90, 294, 439
MnlI	CCTC	4 cut(s)	150, 194, 221, 319
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	473
NdeII	GATC	5 cut(s)	43, 168, 181, 486, 522
NlaIII	CATG	2 cut(s)	175, 505
NlaIV	GGNNCC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	505
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	85, 127
PkrI	GCNGC	2 cut(s)	405, 500
Psp124BI	GAGCTC	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	404, 499
Sau3AI	GATC	5 cut(s)	43, 168, 181, 486, 522
Sau96I	GGNCC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	3 cut(s)	254, 330, 426
SfaNI	GCATC	2 cut(s)	289, 365
SfuI	TTCGAA	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	106
SpeI	ACTAGT	1 cut(s)	103
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	3 cut(s)	90, 294, 439
SspMI	CTAG	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	266, 344, 509
TaqI	TCGA	2 cut(s)	188, 430
TasI	AATT	3 cut(s)	90, 294, 439
TfiI	GAWTC	2 cut(s)	85, 127
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	5 cut(s)	271, 280, 325, 393, 525
TseI	GCWGC	2 cut(s)	403, 498
TspRI	CASTG	5 cut(s)	271, 280, 325, 393, 525
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.