RchiOBHm_Chr5g0040761

protein localization to endoplasmic reticulum exit site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006254
Physical Location & Seq
Forward (+)
35381011 .. 35381792
782 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31923

Sequence Viewer

Length: 378 bp
ATGATTCAAATTTTATTTACACTTGTGTGTGCCGAAATGGTATTGATTCTGAGCCTTCTGTTTCGAAGCCCTTTGAGGCAGTTGGTGATCATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATATACAGTGTGTTCAGTGTGCAGAAGAAACGCTCAATTGATGCAGGCTTTGTTAATCACACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGGTTTTCCCTATTCTTGGCACTGATGATAGATAGGCTGCACTACTATATCAAGGAGCTCTATCGACTTAGAAATTACAGGGAAGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

125

Amino Acids

14.41

Weight (kDa)

9.61

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31 PF05529 3 - 121 6.6e-06 Bap31/Bap29 transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 1 cut(s) 8
AleI CACNNNNGTG 1 cut(s) 25
AluBI AGCT 2 cut(s) 171, 343
AluI AGCT 2 cut(s) 171, 343
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 1 cut(s) 108
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 97, 145
AsuII TTCGAA 2 cut(s) 64, 107
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 309
BclI TGATCA 1 cut(s) 87
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 2 cut(s) 208, 284
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 2 cut(s) 64, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 309
BsgI GTGCAG 2 cut(s) 218, 308
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 124
Bsp119I TTCGAA 2 cut(s) 64, 107
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 2 cut(s) 87, 100
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 2 cut(s) 64, 107
BssMI GATC 2 cut(s) 87, 100
Bst4CI ACNGT 2 cut(s) 185, 263
Bst6I CTCTTC 1 cut(s) 131
BstBI TTCGAA 2 cut(s) 64, 107
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 50, 353
BstKTI GATC 2 cut(s) 90, 103
BstMBI GATC 2 cut(s) 87, 100
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 124
BtsIMutI CAGTG 4 cut(s) 190, 199, 237, 305
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 91
CviJI RGCY 7 cut(s) 54, 69, 124, 171, 225, 322, 343
CviKI_1 RGCY 7 cut(s) 54, 69, 124, 171, 225, 322, 343
DdeI CTNAG 2 cut(s) 50, 353
DpnI GATC 2 cut(s) 89, 102
DpnII GATC 2 cut(s) 87, 100
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 1 cut(s) 94
FaiI YATR 7 cut(s) 92, 179, 181, 254, 259, 284, 333
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 129
FatI CATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 1 cut(s) 94
HinfI GANTC 2 cut(s) 4, 46
HphI GGTGA 2 cut(s) 97, 145
Hpy188I TCNGA 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 185, 263
HpyCH4V TGCA 3 cut(s) 199, 221, 325
HpyF3I CTNAG 2 cut(s) 50, 353
Hsp92II CATG 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 2 cut(s) 87, 100
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 3 cut(s) 98, 207, 349
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 2 cut(s) 208, 284
MalI GATC 2 cut(s) 89, 102
MboI GATC 2 cut(s) 87, 100
MboII GAAGA 3 cut(s) 148, 154, 214
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 9, 213, 358
MnlI CCTC 4 cut(s) 69, 113, 140, 238
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 2 cut(s) 25, 240
MunI CAATTG 1 cut(s) 213
NdeII GATC 2 cut(s) 87, 100
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 151
NspV TTCGAA 2 cut(s) 64, 107
OliI CACNNNNGTG 1 cut(s) 25
PfeI GAWTC 2 cut(s) 4, 46
PkrI GCNGC 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 122
RseI CAYNNNNRTG 2 cut(s) 25, 240
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 2 cut(s) 87, 100
Sau96I GGNCC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 345
SetI ASST 3 cut(s) 173, 249, 345
SfaNI GCATC 2 cut(s) 208, 284
SfuI TTCGAA 2 cut(s) 64, 107
SgeI CNNG 8 cut(s) 35, 103, 125, 131, 170, 234, 313, 349
SmiMI CAYNNNNRTG 2 cut(s) 25, 240
Sse9I AATT 3 cut(s) 9, 213, 358
SstI GAGCTC 1 cut(s) 345
TaaI ACNGT 2 cut(s) 185, 263
TaqI TCGA 3 cut(s) 64, 107, 349
TasI AATT 3 cut(s) 9, 213, 358
TfiI GAWTC 2 cut(s) 4, 46
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 4 cut(s) 190, 199, 244, 312
TseI GCWGC 1 cut(s) 322
TspRI CASTG 4 cut(s) 190, 199, 244, 312
XapI RAATTY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.