Rh5BG277800

protein localization to endoplasmic reticulum exit site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006254
Physical Location & Seq
Forward (+)
35036932 .. 35037309
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG277800.1

Sequence Viewer

Length: 378 bp
ATGATTCAAGTTTTATTTACACTAGTATGTGCCGAAATGGTATTGATTCTGAGCCTTCTGTTTAGAAGCCCTTTGAGGCAGTTGGTGATCATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATGTACAGTGTGTTCAGTGTGCAGAAGAAATGCTCAATTGATGCAGGCTTTGTTAATCCCACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGTGATGATCATTATTCATCAATTAATTATATCCAAATAACTCATTGTTTACCCTTTTCTAGAATAATTTCTACATTCGTCGATCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.95

Weight (kDa)

7.73

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 108
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 1 cut(s) 8
AhlI ACTAGT 1 cut(s) 22
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
AlwI GGATC 1 cut(s) 108
AoxI GGCC 1 cut(s) 122
AseI ATTAAT 1 cut(s) 309
Asp700I GAANNNNTTC 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 3 cut(s) 97, 145, 299
AsuII TTCGAA 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 154
BclI TGATCA 2 cut(s) 87, 292
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 2 cut(s) 23, 345
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 2 cut(s) 208, 284
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 107
BseMII CTCAG 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 218
BshFI GGCC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 4 cut(s) 87, 100, 292, 367
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 180
BssMI GATC 4 cut(s) 87, 100, 292, 367
Bst4CI ACNGT 2 cut(s) 185, 263
Bst6I CTCTTC 1 cut(s) 131
BstAUI TGTACA 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 50
BstKTI GATC 4 cut(s) 90, 103, 295, 370
BstMBI GATC 4 cut(s) 87, 100, 292, 367
BstV2I GAAGAC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 124
BtsIMutI CAGTG 3 cut(s) 190, 199, 237
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 91, 178
CviJI RGCY 5 cut(s) 54, 69, 124, 171, 225
CviKI_1 RGCY 5 cut(s) 54, 69, 124, 171, 225
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 50
DpnI GATC 4 cut(s) 89, 102, 294, 369
DpnII GATC 4 cut(s) 87, 100, 292, 367
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
FaeI CATG 2 cut(s) 94, 181
FaiI YATR 7 cut(s) 28, 92, 179, 254, 259, 284, 315
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 129
FatI CATG 2 cut(s) 90, 177
FbaI TGATCA 2 cut(s) 87, 292
FspBI CTAG 2 cut(s) 23, 345
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 2 cut(s) 94, 181
HinfI GANTC 2 cut(s) 4, 46
HphI GGTGA 3 cut(s) 97, 145, 299
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 1 cut(s) 335
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 185, 263
HpyCH4V TGCA 2 cut(s) 199, 221
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 2 cut(s) 94, 181
Ksp22I TGATCA 2 cut(s) 87, 292
Kzo9I GATC 4 cut(s) 87, 100, 292, 367
LpnPI CCDG 2 cut(s) 98, 207
LweI GCATC 2 cut(s) 208, 284
MaeI CTAG 2 cut(s) 23, 345
MalI GATC 4 cut(s) 89, 102, 294, 369
MboI GATC 4 cut(s) 87, 100, 292, 367
MboII GAAGA 3 cut(s) 148, 154, 214
MfeI CAATTG 1 cut(s) 213
MluCI AATT 4 cut(s) 213, 306, 310, 351
MnlI CCTC 4 cut(s) 69, 113, 140, 238
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 2 cut(s) 231, 309
MslI CAYNNNNRTG 1 cut(s) 25
MunI CAATTG 1 cut(s) 213
NdeII GATC 4 cut(s) 87, 100, 292, 367
NlaIII CATG 2 cut(s) 94, 181
NlaIV GGNNCC 1 cut(s) 151
NspV TTCGAA 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 4, 46
PshBI ATTAAT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 122
PsrI GAACNNNNNNTAC 2 cut(s) 173, 205
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 25
SaqAI TTAA 2 cut(s) 231, 309
Sau3AI GATC 4 cut(s) 87, 100, 292, 367
Sau96I GGNCC 1 cut(s) 122
SetI ASST 3 cut(s) 173, 249, 289
SfaNI GCATC 2 cut(s) 208, 284
SfuI TTCGAA 1 cut(s) 107
SgeI CNNG 9 cut(s) 20, 35, 103, 125, 131, 170, 190, 234, 357
SmiMI CAYNNNNRTG 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 4 cut(s) 213, 306, 310, 351
SspMI CTAG 2 cut(s) 23, 345
TaaI ACNGT 2 cut(s) 185, 263
TaqI TCGA 2 cut(s) 107, 366
TasI AATT 4 cut(s) 213, 306, 310, 351
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 2 cut(s) 4, 46
Tru1I TTAA 2 cut(s) 231, 309
Tru9I TTAA 2 cut(s) 231, 309
TscAI CASTG 3 cut(s) 190, 199, 244
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 3 cut(s) 190, 199, 244
VspI ATTAAT 1 cut(s) 309
XbaI TCTAGA 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 2 cut(s) 23, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.