FvH4_3g23110

protein localization to endoplasmic reticulum exit site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006254
Physical Location & Seq
Forward (+)
16188627 .. 16189922
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23110.t1

Sequence Viewer

Length: 459 bp
ATGATTCAAGTTTTATTTACAATTGTGTTTGCCGAAATGGTGTTGATTCTGAGCCTTCTGTTTAGAAGCCCTTTGAGGCAGTTGGTGATCATGGGATTGGATTGTTCGAAGCAGGGACGAGGGCCATTGGTGGCCAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTCATCTCTACCATATACAGTGTGTTCAATGTTCATAAGAAACGCTCGACTGAGGCAGGCTTTATTAATCCAACTAATGAGGTTCTTATGGCACACCGCATATTGGAAGCATCTCTTACAGGGTTTTCCCTATTCTTGGCACTGATGATAGACAGGTTGCACTACTATATCAAAGAGCTCTATCGACTTAGAAAATACAAGCAAGAAGAACTGAAAATGGAATGCGATGAGCAGAGTCAGATCAGGAAAAGCAGCATTCACAGTAGTGCACCAGCAGTGATAAAAAAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

153

Amino Acids

17.36

Weight (kDa)

9.69

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31 PF05529 4 - 121 5.4e-06 Bap31/Bap29 transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 268, 301
AgsI TTSAA 2 cut(s) 8, 193
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw21I GWGCWC 2 cut(s) 345, 436
Alw44I GTGCAC 1 cut(s) 432
AoxI GGCC 2 cut(s) 122, 132
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 417
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 97
AsuII TTCGAA 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 436
BalI TGGCCA 1 cut(s) 134
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 345, 436
BbvI GCAGC 1 cut(s) 429
BclI TGATCA 1 cut(s) 87
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 301
BseLI CCNNNNNNNGG 2 cut(s) 268, 301
BseMII CTCAG 2 cut(s) 41, 207
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 429
BshFI GGCC 2 cut(s) 124, 134
BsiHKAI GWGCWC 2 cut(s) 345, 436
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 268, 301
BsmFI GGGAC 1 cut(s) 129
BsmI GAATGC 2 cut(s) 392, 420
BsnI GGCC 2 cut(s) 124, 134
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 345, 436
Bsp143I GATC 2 cut(s) 87, 405
BspACI CCGC 1 cut(s) 262
BspANI GGCC 2 cut(s) 124, 134
BspCNI CTCAG 2 cut(s) 42, 208
BspLI GGNNCC 1 cut(s) 151
BspT104I TTCGAA 1 cut(s) 107
BssMI GATC 2 cut(s) 87, 405
Bst4CI ACNGT 2 cut(s) 185, 428
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 50, 216, 353
BstKTI GATC 2 cut(s) 90, 408
BstMBI GATC 2 cut(s) 87, 405
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 124, 134
BtgZI GCGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 3 cut(s) 190, 305, 447
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 54, 69, 124, 134, 225, 343
CviKI_1 RGCY 6 cut(s) 54, 69, 124, 134, 225, 343
DdeI CTNAG 3 cut(s) 50, 216, 353
DpnI GATC 2 cut(s) 89, 407
DpnII GATC 2 cut(s) 87, 405
EaeI YGGCCR 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 1 cut(s) 94
FaiI YATR 8 cut(s) 92, 179, 181, 201, 254, 266, 333, 457
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 129
FatI CATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 418
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 418
GluI GCNGC 1 cut(s) 418
HaeIII GGCC 2 cut(s) 124, 134
Hin1II CATG 1 cut(s) 94
HinfI GANTC 3 cut(s) 4, 46, 400
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 2 cut(s) 51, 405
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 185, 428
HpyCH4V TGCA 2 cut(s) 325, 434
HpyF3I CTNAG 3 cut(s) 50, 216, 353
Hsp92II CATG 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 2 cut(s) 87, 405
LpnPI CCDG 6 cut(s) 98, 207, 270, 304, 394, 450
Lsp1109I GCAGC 1 cut(s) 429
LweI GCATC 1 cut(s) 284
MalI GATC 2 cut(s) 89, 407
MboI GATC 2 cut(s) 87, 405
MboII GAAGA 3 cut(s) 154, 157, 383
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 2 cut(s) 345, 436
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 5 cut(s) 69, 113, 140, 211, 238
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 134
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 2 cut(s) 392, 420
NdeII GATC 2 cut(s) 87, 405
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 151
NspV TTCGAA 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 429
PctI GAATGC 2 cut(s) 392, 420
PfeI GAWTC 2 cut(s) 4, 46
PkrI GCNGC 1 cut(s) 419
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 2 cut(s) 87, 405
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 409
SduI GDGCHC 2 cut(s) 345, 436
SetI ASST 3 cut(s) 249, 323, 345
SfaNI GCATC 1 cut(s) 284
SfuI TTCGAA 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 262
SstI GAGCTC 1 cut(s) 345
TaaI ACNGT 2 cut(s) 185, 428
TaqI TCGA 3 cut(s) 107, 212, 349
TasI AATT 1 cut(s) 21
TfiI GAWTC 2 cut(s) 4, 46
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 3 cut(s) 190, 312, 447
TseI GCWGC 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 157, 188
TspRI CASTG 3 cut(s) 190, 312, 447
VneI GTGCAC 1 cut(s) 432
VspI ATTAAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.