Rh5AG272800

protein localization to endoplasmic reticulum exit site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006254
Physical Location & Seq
Forward (+)
36526190 .. 36527492
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG272800.1

Sequence Viewer

Length: 549 bp
ATGTCAGTAAAATCATTCAACCAACAAAATAAAAAGATAACCGATCTTTGCTTTCCGGTTGCACTTTATCTATTTGAAGAAATGATTCAAATTTTATTTACACTTGTGTGTGCCGAAATGGTATTGATTCTGAGCCTTCTGTTTCGAAGCCCTTTGAGGCAGTTGGTGATCATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATATACAGTGTGTTCAGTGTGCAGAAGAAACGCTCAATTGATGCAGGCTTTGTTAATCCCACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGGTTTTCCCTATTCTTGGCACTGATAATAGATAGGCTGCACTACTATATCAAGGAGCTCTATCGACTTAGAAATTACAGGGAAGAAGAACTGAAAAAGGAATGCAATGAGCAGAGCAAGATCAGGAAAAGCAGCATGCACGGTACTGCCCCAGTGATAAAAAAGATCGACATAAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

182

Amino Acids

20.93

Weight (kDa)

9.56

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31 PF05529 30 - 147 9.6e-06 Bap31/Bap29 transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 90
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 3 cut(s) 19, 77, 89
AleI CACNNNNGTG 1 cut(s) 106
AluBI AGCT 2 cut(s) 252, 424
AluI AGCT 2 cut(s) 252, 424
Alw21I GWGCWC 1 cut(s) 426
AlwI GGATC 1 cut(s) 189
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 403, 498
ApoI RAATTY 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 178, 226
AsuII TTCGAA 2 cut(s) 145, 188
BanII GRGCYC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 390, 510
BclI TGATCA 1 cut(s) 168
BisI GCNGC 2 cut(s) 404, 499
BlsI GCNGC 2 cut(s) 405, 500
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 289, 365
BmuI ACTGGG 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 235
Bpu14I TTCGAA 2 cut(s) 145, 188
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 518
BseXI GCAGC 2 cut(s) 390, 510
BsgI GTGCAG 2 cut(s) 299, 389
BshFI GGCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 1 cut(s) 205
Bsp119I TTCGAA 2 cut(s) 145, 188
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 5 cut(s) 43, 168, 181, 486, 531
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 189
BspT104I TTCGAA 2 cut(s) 145, 188
BsrDI GCAATG 1 cut(s) 478
BsrI ACTGG 1 cut(s) 518
BssMI GATC 5 cut(s) 43, 168, 181, 486, 531
Bst4CI ACNGT 3 cut(s) 266, 344, 509
Bst6I CTCTTC 1 cut(s) 212
BstBI TTCGAA 2 cut(s) 145, 188
BstC8I GCNNGC 2 cut(s) 304, 503
BstDEI CTNAG 2 cut(s) 131, 434
BstKTI GATC 5 cut(s) 46, 171, 184, 489, 534
BstMBI GATC 5 cut(s) 43, 168, 181, 486, 531
BstNSI RCATGY 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 390, 510
BstV2I GAAGAC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 205
BtsIMutI CAGTG 5 cut(s) 271, 280, 318, 386, 525
Cac8I GCNNGC 2 cut(s) 304, 503
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 510
CviAII CATG 2 cut(s) 172, 502
CviJI RGCY 8 cut(s) 135, 150, 205, 252, 306, 403, 424, 545
CviKI_1 RGCY 8 cut(s) 135, 150, 205, 252, 306, 403, 424, 545
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 2 cut(s) 131, 434
DpnI GATC 5 cut(s) 45, 170, 183, 488, 533
DpnII GATC 5 cut(s) 43, 168, 181, 486, 531
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 426
Eco53kI GAGCTC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 2 cut(s) 175, 505
FaiI YATR 9 cut(s) 173, 260, 262, 335, 340, 365, 414, 503, 539
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 210
FatI CATG 2 cut(s) 171, 501
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 404, 499
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 2 cut(s) 404, 499
GluI GCNGC 2 cut(s) 404, 499
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 56
Hin1II CATG 2 cut(s) 175, 505
HinfI GANTC 2 cut(s) 85, 127
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 178, 226
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 490
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 3 cut(s) 266, 344, 509
HpyCH4V TGCA 6 cut(s) 62, 280, 302, 406, 471, 505
HpyF3I CTNAG 2 cut(s) 131, 434
Hsp92II CATG 2 cut(s) 175, 505
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 5 cut(s) 43, 168, 181, 486, 531
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 6 cut(s) 69, 179, 288, 430, 475, 531
Lsp1109I GCAGC 2 cut(s) 390, 510
LweI GCATC 2 cut(s) 289, 365
MalI GATC 5 cut(s) 45, 170, 183, 488, 533
MboI GATC 5 cut(s) 43, 168, 181, 486, 531
MboII GAAGA 6 cut(s) 89, 229, 235, 295, 461, 464
MfeI CAATTG 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 3 cut(s) 90, 294, 439
MnlI CCTC 4 cut(s) 150, 194, 221, 319
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 473
NdeII GATC 5 cut(s) 43, 168, 181, 486, 531
NlaIII CATG 2 cut(s) 175, 505
NlaIV GGNNCC 1 cut(s) 232
NspI RCATGY 1 cut(s) 505
NspV TTCGAA 2 cut(s) 145, 188
OliI CACNNNNGTG 1 cut(s) 106
PaeI GCATGC 1 cut(s) 505
PctI GAATGC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 85, 127
PkrI GCNGC 2 cut(s) 405, 500
Psp124BI GAGCTC 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 1 cut(s) 106
SacI GAGCTC 1 cut(s) 426
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 404, 499
Sau3AI GATC 5 cut(s) 43, 168, 181, 486, 531
Sau96I GGNCC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 426
SetI ASST 3 cut(s) 254, 330, 426
SfaNI GCATC 2 cut(s) 289, 365
SfuI TTCGAA 2 cut(s) 145, 188
SmiMI CAYNNNNRTG 1 cut(s) 106
SphI GCATGC 1 cut(s) 505
Sse9I AATT 3 cut(s) 90, 294, 439
SstI GAGCTC 1 cut(s) 426
TaaI ACNGT 3 cut(s) 266, 344, 509
TaqI TCGA 4 cut(s) 145, 188, 430, 534
TasI AATT 3 cut(s) 90, 294, 439
TfiI GAWTC 2 cut(s) 85, 127
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 5 cut(s) 271, 280, 325, 393, 525
TseI GCWGC 2 cut(s) 403, 498
TspRI CASTG 5 cut(s) 271, 280, 325, 393, 525
XapI RAATTY 1 cut(s) 90
XceI RCATGY 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.