Rh5DG285800

protein localization to endoplasmic reticulum exit site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006254
Physical Location & Seq
Forward (+)
35513918 .. 35514683
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG285800.1

Sequence Viewer

Length: 378 bp
ATGGTATTGATTCTGAGCCTTCTGTTTCGAAGCCCTTTGAGGCAGTTGGTGATCATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATATACAGTGTGTTCAGTGTGCAGAAGAAACGCTCAATTGACGCAGGCTTTGTTAATCCCACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGGTTTTCCCTATTCTTGGCACTGATGATAGATAGGCTGCACTACTATATCAAGGAGCTCTATCGACTTAGAAATTACAGGGAAGCAGAACTGAAAAAGGAATGCAATGAGCAGAGCAAGATCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

125

Amino Acids

14.42

Weight (kDa)

9.88

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 265
AluBI AGCT 2 cut(s) 135, 307
AluI AGCT 2 cut(s) 135, 307
Alw21I GWGCWC 1 cut(s) 309
AlwI GGATC 1 cut(s) 72
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 286
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 61, 109
AsuII TTCGAA 2 cut(s) 28, 71
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 273
BclI TGATCA 1 cut(s) 51
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 118
Bpu14I TTCGAA 2 cut(s) 28, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 273
BsgI GTGCAG 2 cut(s) 182, 272
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 2 cut(s) 28, 71
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 51, 64, 369
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 72
BspT104I TTCGAA 2 cut(s) 28, 71
BsrDI GCAATG 1 cut(s) 361
BssMI GATC 3 cut(s) 51, 64, 369
Bst4CI ACNGT 2 cut(s) 149, 227
Bst6I CTCTTC 1 cut(s) 95
BstBI TTCGAA 2 cut(s) 28, 71
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 14, 317
BstKTI GATC 3 cut(s) 54, 67, 372
BstMBI GATC 3 cut(s) 51, 64, 369
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 88
BtsIMutI CAGTG 4 cut(s) 154, 163, 201, 269
Cac8I GCNNGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 191
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 18, 33, 88, 135, 189, 286, 307
CviKI_1 RGCY 7 cut(s) 18, 33, 88, 135, 189, 286, 307
DdeI CTNAG 2 cut(s) 14, 317
DpnI GATC 3 cut(s) 53, 66, 371
DpnII GATC 3 cut(s) 51, 64, 369
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 309
FaeI CATG 1 cut(s) 58
FaiI YATR 7 cut(s) 56, 143, 145, 218, 223, 248, 297
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 54
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 1 cut(s) 88
HgaI GACGC 1 cut(s) 191
Hin1II CATG 1 cut(s) 58
HinfI GANTC 1 cut(s) 10
HphI GGTGA 2 cut(s) 61, 109
Hpy188I TCNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 149, 227
HpyCH4V TGCA 3 cut(s) 163, 289, 354
HpyF3I CTNAG 2 cut(s) 14, 317
Hsp92II CATG 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 64, 369
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 4 cut(s) 62, 171, 313, 358
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 248
MalI GATC 3 cut(s) 53, 66, 371
MboI GATC 3 cut(s) 51, 64, 369
MboII GAAGA 3 cut(s) 112, 118, 178
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 177, 322
MnlI CCTC 4 cut(s) 33, 77, 104, 202
MseI TTAA 1 cut(s) 195
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 356
NdeII GATC 3 cut(s) 51, 64, 369
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 115
NspV TTCGAA 2 cut(s) 28, 71
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 86
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 51, 64, 369
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 309
SetI ASST 4 cut(s) 137, 213, 309, 377
SfaNI GCATC 1 cut(s) 248
SfuI TTCGAA 2 cut(s) 28, 71
SgeI CNNG 8 cut(s) 67, 89, 95, 134, 198, 277, 313, 340
Sse9I AATT 2 cut(s) 177, 322
SstI GAGCTC 1 cut(s) 309
TaaI ACNGT 2 cut(s) 149, 227
TaqI TCGA 3 cut(s) 28, 71, 313
TasI AATT 2 cut(s) 177, 322
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 4 cut(s) 154, 163, 208, 276
TseI GCWGC 1 cut(s) 286
TspRI CASTG 4 cut(s) 154, 163, 208, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.