Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Forward (+)

34223557 .. 34224321

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG309900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATATACAGTGTGTTCAGTGTGCAGAAGAAACGCTCAATTGATGCAGGCTTTGTTAATCCCACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGGTTTTCCCTATTCTTGGCACTGATGATAGATAGGCTGCACTACTATATCAAGGAGCTCTATCGACTTAGAAATTACAGGGAAGAAGAACGGAAAAAGGAATGCAATGAGCAGAGCAAGATCAGGAAAAGCAGCATGCACGGTACTGCCCCAGTGATCAAAAAGATCGACATAAGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

125

Amino Acids

14.36

Weight (kDa)

9.85

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	211
AluBI	AGCT	2 cut(s)	81, 253
AluI	AGCT	2 cut(s)	81, 253
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	232, 327
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	219, 339
BclI	TGATCA	1 cut(s)	351
BisI	GCNGC	2 cut(s)	233, 328
BlsI	GCNGC	2 cut(s)	234, 329
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	118, 194
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	219, 339
BsgI	GTGCAG	2 cut(s)	128, 218
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	10, 315, 351, 360
BspANI	GGCC	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	4 cut(s)	10, 315, 351, 360
Bst4CI	ACNGT	3 cut(s)	95, 173, 338
Bst6I	CTCTTC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	133, 332
BstDEI	CTNAG	1 cut(s)	263
BstKTI	GATC	4 cut(s)	13, 318, 354, 363
BstMBI	GATC	4 cut(s)	10, 315, 351, 360
BstNSI	RCATGY	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	219, 339
BstV2I	GAAGAC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	34
BtsIMutI	CAGTG	5 cut(s)	100, 109, 147, 215, 354
Cac8I	GCNNGC	2 cut(s)	133, 332
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	6 cut(s)	34, 81, 135, 232, 253, 374
CviKI_1	RGCY	6 cut(s)	34, 81, 135, 232, 253, 374
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	4 cut(s)	12, 317, 353, 362
DpnII	GATC	4 cut(s)	10, 315, 351, 360
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	89, 91, 164, 169, 194, 243, 332, 368
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	233, 328
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	233, 328
GluI	GCNGC	2 cut(s)	233, 328
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	319
HpyCH4III	ACNGT	3 cut(s)	95, 173, 338
HpyCH4V	TGCA	5 cut(s)	109, 131, 235, 300, 334
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	4 cut(s)	10, 315, 351, 360
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	8, 117, 259, 304, 360
Lsp1109I	GCAGC	2 cut(s)	219, 339
LweI	GCATC	2 cut(s)	118, 194
MalI	GATC	4 cut(s)	12, 317, 353, 362
MboI	GATC	4 cut(s)	10, 315, 351, 360
MboII	GAAGA	5 cut(s)	58, 64, 124, 290, 293
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	123, 268
MnlI	CCTC	3 cut(s)	23, 50, 148
MseI	TTAA	1 cut(s)	141
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	302
NdeII	GATC	4 cut(s)	10, 315, 351, 360
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	234, 329
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	233, 328
Sau3AI	GATC	4 cut(s)	10, 315, 351, 360
Sau96I	GGNCC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	3 cut(s)	83, 159, 255
SfaNI	GCATC	2 cut(s)	118, 194
SfuI	TTCGAA	1 cut(s)	17
SphI	GCATGC	1 cut(s)	334
Sse9I	AATT	2 cut(s)	123, 268
SstI	GAGCTC	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	95, 173, 338
TaqI	TCGA	3 cut(s)	17, 259, 363
TasI	AATT	2 cut(s)	123, 268
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	5 cut(s)	100, 109, 154, 222, 354
TseI	GCWGC	2 cut(s)	232, 327
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	5 cut(s)	100, 109, 154, 222, 354
XceI	RCATGY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.