Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Reverse (-)

31249890 .. 31251158

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1213800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAATCAAGTTTTGTTTACACTCGTGCTGGCTGAAATGGCATTGATTCTGAGCCTTTTGTTCCAAACCCCTGTGAGGAAGTTGGTGATCGTGGGGTTAGATCGATCGAAGCAAGGGCGAGGGCCCTTGGTGGCGAAGAGCGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCCACCATATATAGTGTATTCAGTGTTCAGAATCGTTTAACAGAGACAGGCTTTGTCAATCCAACAGATGAGGTTCTTATGGCACATCGTCTCCTAGAAGCATCTCTCATTGGGTTTTCCTTATTCCTGGCAATGGTTATAGATAGACTACACTACTATATCAAAGAGCTCTATCTGCTCCGAAAACGTGTTGAAGAAGTGAAGAATCTGAAAAAGGATCAAGAGCACAGGGAAAGTACTGCTCCTGCAGAAGTGAAGAAGGCAACACAGATGATAGATAAGGCAGCCGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

9.39

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	396
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	75, 304
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	171, 340, 465
AluI	AGCT	3 cut(s)	171, 340, 465
Alw21I	GWGCWC	2 cut(s)	342, 399
Alw26I	GTCTC	2 cut(s)	209, 266
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	1 cut(s)	122
ApaI	GGGCCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	122, 123
AsuHPI	GGTGA	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	126
BanII	GRGCYC	2 cut(s)	126, 342
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	342, 399
BciT130I	CCWGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	209, 266
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	122, 123
BmiI	GGNNCC	2 cut(s)	124, 151
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 304
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	75, 304
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	342, 399
BslI	CCNNNNNNNGG	2 cut(s)	75, 304
BsmAI	GTCTC	2 cut(s)	209, 266
BsmBI	CGTCTC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	124
Bsp120I	GGGCCC	1 cut(s)	122
Bsp1286I	GDGCHC	3 cut(s)	126, 342, 399
Bsp143I	GATC	4 cut(s)	87, 100, 104, 388
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	124, 151
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	396
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	4 cut(s)	87, 100, 104, 388
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	50
BstKTI	GATC	4 cut(s)	90, 103, 107, 391
BstMAI	GTCTC	2 cut(s)	209, 266
BstMBI	GATC	4 cut(s)	87, 100, 104, 388
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 346
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	122, 123
ClaI	ATCGAT	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	408
CviJI	RGCY	8 cut(s)	32, 54, 124, 171, 222, 340, 458, 465
CviKI_1	RGCY	8 cut(s)	32, 54, 124, 171, 222, 340, 458, 465
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	4 cut(s)	89, 102, 106, 390
DpnII	GATC	4 cut(s)	87, 100, 104, 388
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	2 cut(s)	126, 342
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoO109I	RGGNCCY	2 cut(s)	122, 123
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	2 cut(s)	126, 342
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	266
FaiI	YATR	6 cut(s)	179, 181, 183, 251, 311, 330
Fnu4HI	GCNGC	1 cut(s)	456
FriOI	GRGCYC	2 cut(s)	126, 342
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	124
HinfI	GANTC	4 cut(s)	4, 46, 202, 376
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	51, 201, 353, 381
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 346
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	87, 100, 104, 388
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	3 cut(s)	176, 354, 418
LpnPI	CCDG	7 cut(s)	14, 84, 204, 284, 311, 385, 429
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	358
MalI	GATC	4 cut(s)	89, 102, 106, 390
MboI	GATC	4 cut(s)	87, 100, 104, 388
MboII	GAAGA	5 cut(s)	148, 154, 377, 385, 439
MhlI	GDGCHC	3 cut(s)	126, 342, 399
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	69, 113, 140, 235
MseI	TTAA	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	38, 346
NdeII	GATC	4 cut(s)	87, 100, 104, 388
NlaIV	GGNNCC	2 cut(s)	124, 151
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	4, 46, 202, 376
PkrI	GCNGC	1 cut(s)	457
Ple19I	CGATCG	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	124, 151
PspOMI	GGGCCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	122, 123
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PstI	CTGCAG	1 cut(s)	421
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	4 cut(s)	87, 100, 104, 388
Sau96I	GGNCC	2 cut(s)	122, 123
ScaI	AGTACT	1 cut(s)	409
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	3 cut(s)	126, 342, 399
SetI	ASST	5 cut(s)	173, 246, 342, 361, 467
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	417
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	103, 107
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	4 cut(s)	4, 46, 202, 376
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	199
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.