RchiOBHm_Chr5g0040711

protein localization to endoplasmic reticulum exit site

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
35362700 .. 35363534
835 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31919

Sequence Viewer

Length: 465 bp
ATGATTCAAGTTTTATTTACACTAGTATTTGCCGAAATGGTATTGATTCTGAGCCTTCTGTTTAGAAGCCCTTTGAGGCAGTTGGTGATCATGGGATTGGATCGTTCGAAGCAGGGACGAGGGCCATTGGTGGTGAAGAGTGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCTACCATATACAGTGTGTTCAGTGTGCAGATTGATGCAGGCTATGTTAATCCCACTGATGAGGTTCTTATGGCATACCGTCTATTAGAAGCATCTCTTATAGGGTTTTCCATATTCTTGGCACTGATGATAGATAGGCTGCATTACTATATCAAGGAGCTCTATCGACTTAGAAATTACAGGGAAGCAGAACTGAAAAAGGAATGCAATGAGCATAGCAAGATCAGGAAAAGCATAAAGCAGGGATCCCAGAGTTGGGACGAACAACCATTGTCCAAGACTCCAAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.67

Weight (kDa)

9.52

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 108, 411, 424
AfiI CCNNNNNNNGG 2 cut(s) 426, 427
AgsI TTSAA 1 cut(s) 8
AhlI ACTAGT 1 cut(s) 22
AluBI AGCT 2 cut(s) 171, 331
AluI AGCT 2 cut(s) 171, 331
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 3 cut(s) 108, 411, 424
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 97, 145
AsuII TTCGAA 1 cut(s) 107
BamHI GGATCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 297
BclI TGATCA 1 cut(s) 87
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 151, 418
BmsI GCATC 2 cut(s) 196, 272
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 427
Bse3DI GCAATG 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 426, 427
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 218
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 333
BslFI GGGAC 2 cut(s) 129, 443
BslI CCNNNNNNNGG 2 cut(s) 426, 427
BsmFI GGGAC 2 cut(s) 129, 443
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 87, 100, 393, 416
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 151, 418
BspPI GGATC 3 cut(s) 108, 411, 424
BspT104I TTCGAA 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 385
BssMI GATC 4 cut(s) 87, 100, 393, 416
Bst4CI ACNGT 2 cut(s) 185, 251
Bst6I CTCTTC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 50, 341
BstKTI GATC 4 cut(s) 90, 103, 396, 419
BstMBI GATC 4 cut(s) 87, 100, 393, 416
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 289
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 1 cut(s) 124
BtsIMutI CAGTG 4 cut(s) 190, 199, 225, 293
Cac8I GCNNGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 91
CviJI RGCY 7 cut(s) 54, 69, 124, 171, 213, 310, 331
CviKI_1 RGCY 7 cut(s) 54, 69, 124, 171, 213, 310, 331
DdeI CTNAG 2 cut(s) 50, 341
DpnI GATC 4 cut(s) 89, 102, 395, 418
DpnII GATC 4 cut(s) 87, 100, 393, 416
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 1 cut(s) 94
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 2 cut(s) 129, 443
FatI CATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 1 cut(s) 23
GluI GCNGC 1 cut(s) 311
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 1 cut(s) 94
HinfI GANTC 3 cut(s) 4, 46, 451
HphI GGTGA 2 cut(s) 97, 145
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 185, 251
HpyCH4V TGCA 4 cut(s) 199, 209, 313, 378
HpyF3I CTNAG 2 cut(s) 50, 341
Hsp92II CATG 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 4 cut(s) 87, 100, 393, 416
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 6 cut(s) 98, 195, 337, 382, 398, 434
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 196, 272
MaeI CTAG 1 cut(s) 23
MalI GATC 4 cut(s) 89, 102, 395, 418
MboI GATC 4 cut(s) 87, 100, 393, 416
MboII GAAGA 2 cut(s) 148, 154
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 4 cut(s) 69, 113, 140, 226
MseI TTAA 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 380
NdeII GATC 4 cut(s) 87, 100, 393, 416
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 151, 418
NspV TTCGAA 1 cut(s) 107
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 4, 46
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 151, 418
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 416
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 4 cut(s) 87, 100, 393, 416
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 445
SduI GDGCHC 1 cut(s) 333
SetI ASST 3 cut(s) 173, 237, 333
SfaNI GCATC 2 cut(s) 196, 272
SfuI TTCGAA 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 1 cut(s) 346
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 333
TaaI ACNGT 2 cut(s) 185, 251
TaqI TCGA 2 cut(s) 107, 337
TasI AATT 1 cut(s) 346
TfiI GAWTC 2 cut(s) 4, 46
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 4 cut(s) 190, 199, 232, 300
TseI GCWGC 1 cut(s) 310
TspRI CASTG 4 cut(s) 190, 199, 232, 300
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.