Rmu_sc0002719.1_g000002

protein localization to endoplasmic reticulum exit site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002719.1
OG0006254
Physical Location & Seq
Reverse (-)
4684 .. 5447
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002719.1_g000002.1.cds

Sequence Viewer

Length: 375 bp
atggtattgattctgagccttctgtttcgaagccctttgaggcagttggtgatcatgggattggatcgttcgaagcagggacgagggccattggtggtgaagagtgtgggaggaaccattctcgtcttctttagctctaccatatacagtgtgttcagtgtgcagaaacgctcaattgacgcaggctttgttaatcccactgatgaggttcttatggcataccgtctattagaagcatctcttatagggttttccctattcttggcactgatgatagataggctgcactactatatcaaggagctctatcgacttagaaattacagggaagcagaactgaaaaaggaatgcaatgagcagagcaagatcaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

124

Amino Acids

14.29

Weight (kDa)

9.81

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 262
AluBI AGCT 2 cut(s) 135, 304
AluI AGCT 2 cut(s) 135, 304
Alw21I GWGCWC 1 cut(s) 306
AlwI GGATC 1 cut(s) 72
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 283
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 61, 109
AsuII TTCGAA 2 cut(s) 28, 71
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 270
BclI TGATCA 1 cut(s) 51
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 118
Bpu14I TTCGAA 2 cut(s) 28, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 270
BsgI GTGCAG 2 cut(s) 182, 269
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 306
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 2 cut(s) 28, 71
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 51, 64, 366
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 72
BspT104I TTCGAA 2 cut(s) 28, 71
BsrDI GCAATG 1 cut(s) 358
BssMI GATC 3 cut(s) 51, 64, 366
Bst4CI ACNGT 2 cut(s) 149, 224
Bst6I CTCTTC 1 cut(s) 95
BstBI TTCGAA 2 cut(s) 28, 71
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 14, 314
BstKTI GATC 3 cut(s) 54, 67, 369
BstMBI GATC 3 cut(s) 51, 64, 366
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 88
BtsIMutI CAGTG 4 cut(s) 154, 163, 198, 266
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 188
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 18, 33, 88, 135, 186, 283, 304
CviKI_1 RGCY 7 cut(s) 18, 33, 88, 135, 186, 283, 304
DdeI CTNAG 2 cut(s) 14, 314
DpnI GATC 3 cut(s) 53, 66, 368
DpnII GATC 3 cut(s) 51, 64, 366
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 1 cut(s) 58
FaiI YATR 7 cut(s) 56, 143, 145, 215, 220, 245, 294
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 54
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 88
HgaI GACGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 58
HinfI GANTC 1 cut(s) 10
HphI GGTGA 2 cut(s) 61, 109
Hpy188I TCNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 149, 224
HpyCH4V TGCA 3 cut(s) 163, 286, 351
HpyF3I CTNAG 2 cut(s) 14, 314
Hsp92II CATG 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 64, 366
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 4 cut(s) 62, 168, 310, 355
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 245
MalI GATC 3 cut(s) 53, 66, 368
MboI GATC 3 cut(s) 51, 64, 366
MboII GAAGA 2 cut(s) 112, 118
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 2 cut(s) 174, 319
MnlI CCTC 4 cut(s) 33, 77, 104, 199
MseI TTAA 1 cut(s) 192
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 353
NdeII GATC 3 cut(s) 51, 64, 366
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 115
NspV TTCGAA 2 cut(s) 28, 71
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 86
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 51, 64, 366
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 306
SetI ASST 4 cut(s) 137, 210, 306, 374
SfaNI GCATC 1 cut(s) 245
SfuI TTCGAA 2 cut(s) 28, 71
SgeI CNNG 8 cut(s) 67, 89, 95, 134, 195, 274, 310, 337
Sse9I AATT 2 cut(s) 174, 319
SstI GAGCTC 1 cut(s) 306
TaaI ACNGT 2 cut(s) 149, 224
TaqI TCGA 3 cut(s) 28, 71, 310
TasI AATT 2 cut(s) 174, 319
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 4 cut(s) 154, 163, 205, 273
TseI GCWGC 1 cut(s) 283
TspRI CASTG 4 cut(s) 154, 163, 205, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.