AT3G20800

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003117
Physical Location & Seq
Reverse (-)
7271137 .. 7274013
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20800.1

Sequence Viewer

Length: 951 bp
ATGGCGAATCTACCTTCTTCTCTCTCCATGGGCACACCTTTCGGTGGTCCTAGCACCTCCGCACAAAATCCTACCGGAGCTCCGGCCAACAAAGATCGCAATTTGGCCTCTGCTGAACAGTTGGTACTCGATCTCAGCAATCCTGAACTCAGAGAAAATGCTCTTCTCGAGCTTTCCAAGAAAAGAGAATTGTTTCAGGATCTGGCGCCTTTGTTGTGGAACTCTTTTGGTACCATTGCTGCCTTGTTACAGGAGATTGTATCAATCTACTCTGTTCTTGCACCTCCAAATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCTCTTCTTCAGTGCGTAGCATCTCATTCTGACACGAGAATGTTATTTCTCAAGGCTCATATCCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGGTTGATGATACAGAGGTCATTAGCTTCCTTCTTTCAACTGAAATTATTCCTCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAGTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGATTACATCTGCACAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGGGAAATATGGTTCAGTCACTTGTGGAGCAGCCTTCTCCGCGCCTTTTGAAGCATATCATTCGTTGCTATCTCCGTTTATCAGACAACCCAAGGGCTTGTGCTGCACTCGCAAGCTGTCTCCCTGACTCGCTACGAGATGGATCCTTTAGCAATTGTCTTCGCGAGGATCCAACTGCAAGAAGGTGGCTGCAACAGTTGGTGCACAATGTTGGAGTTGGTCGCGTCCCAACACATCAAGGTGGAGGATTTGAGCACATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

316

Amino Acids

34.71

Weight (kDa)

6.99

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 41 - 299 2.5e-125 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 2 cut(s) 205, 230
AccBSI CCGCTC 1 cut(s) 661
AccII CGCG 3 cut(s) 727, 849, 909
AciI CCGC 4 cut(s) 60, 454, 661, 725
AclWI GGATC 5 cut(s) 207, 822, 835, 848, 861
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 4 cut(s) 126, 232, 401, 556
AfiI CCNNNNNNNGG 2 cut(s) 44, 559
AgsI TTSAA 3 cut(s) 528, 608, 736
AloI GAACNNNNNNTCC 2 cut(s) 681, 713
AluBI AGCT 5 cut(s) 80, 172, 516, 577, 801
AluI AGCT 5 cut(s) 80, 172, 516, 577, 801
Alw21I GWGCWC 4 cut(s) 82, 484, 891, 942
Alw26I GTCTC 1 cut(s) 809
Alw44I GTGCAC 2 cut(s) 480, 887
AlwI GGATC 5 cut(s) 207, 822, 835, 848, 861
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 84, 105
ApaLI GTGCAC 2 cut(s) 480, 887
ApeKI GCWGC 4 cut(s) 239, 715, 788, 874
Asp700I GAANNNNTTC 2 cut(s) 192, 537
Asp718I GGTACC 1 cut(s) 230
AspA2I CCTAGG 1 cut(s) 466
AspLEI GCGC 2 cut(s) 208, 729
AspS9I GGNCC 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 47
AvrII CCTAGG 1 cut(s) 466
BaeGI GKGCMC 3 cut(s) 35, 484, 891
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BamHI GGATCC 2 cut(s) 827, 853
BanI GGYRCC 2 cut(s) 205, 230
BanII GRGCYC 1 cut(s) 82
BauI CACGAG 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 836
Bbv12I GWGCWC 4 cut(s) 82, 484, 891, 942
BbvI GCAGC 4 cut(s) 226, 727, 775, 861
BccI CCATC 2 cut(s) 628, 818
BcgI CGANNNNNNTGC 6 cut(s) 22, 56, 310, 344, 728, 762
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 3 cut(s) 51, 462, 467
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 5 cut(s) 240, 455, 716, 789, 875
BlnI CCTAGG 1 cut(s) 466
BlsI GCNGC 5 cut(s) 241, 456, 717, 790, 876
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 4 cut(s) 207, 232, 829, 855
BmsI GCATC 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 836
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 4 cut(s) 27, 466, 558, 776
BsaWI WCCGGW 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 559
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 4 cut(s) 27, 466, 558, 776
BseGI GGATG 2 cut(s) 628, 639
BseLI CCNNNNNNNGG 2 cut(s) 44, 559
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 3 cut(s) 148, 163, 317
BseSI GKGCMC 3 cut(s) 35, 484, 891
BseXI GCAGC 4 cut(s) 226, 727, 775, 861
BsgI GTGCAG 2 cut(s) 631, 774
Bsh1236I CGCG 3 cut(s) 727, 849, 909
BshFI GGCC 2 cut(s) 86, 107
BshNI GGYRCC 2 cut(s) 205, 230
BsiHKAI GWGCWC 4 cut(s) 82, 484, 891, 942
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 75, 83
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 44, 559
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 896
BsnI GGCC 2 cut(s) 86, 107
BsoBI CYCGRG 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 5 cut(s) 35, 82, 484, 891, 942
Bsp143I GATC 5 cut(s) 94, 130, 199, 827, 853
Bsp19I CCATGG 2 cut(s) 27, 558
Bsp68I TCGCGA 1 cut(s) 849
BspACI CCGC 4 cut(s) 60, 454, 661, 725
BspANI GGCC 2 cut(s) 86, 107
BspCNI CTCAG 3 cut(s) 147, 162, 316
BspFNI CGCG 3 cut(s) 727, 849, 909
BspLI GGNNCC 4 cut(s) 207, 232, 829, 855
BspPI GGATC 5 cut(s) 207, 822, 835, 848, 861
BspQI GCTCTTC 2 cut(s) 168, 339
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 2 cut(s) 205, 230
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 4 cut(s) 27, 466, 558, 776
BssMI GATC 5 cut(s) 94, 130, 199, 827, 853
BssNI GRCGYC 1 cut(s) 206
BssSI CACGAG 1 cut(s) 364
BssT1I CCWWGG 4 cut(s) 27, 466, 558, 776
Bst2BI CACGAG 1 cut(s) 364
Bst4CI ACNGT 5 cut(s) 120, 314, 589, 618, 882
Bst6I CTCTTC 2 cut(s) 168, 339
BstACI GRCGYC 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 330, 799
BstDEI CTNAG 3 cut(s) 134, 149, 303
BstDSI CCRYGG 2 cut(s) 27, 558
BstF5I GGATG 2 cut(s) 628, 639
BstFNI CGCG 3 cut(s) 727, 849, 909
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 2 cut(s) 208, 729
BstKTI GATC 5 cut(s) 97, 133, 202, 830, 856
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 5 cut(s) 94, 130, 199, 827, 853
BstMWI GCNNNNNNNGC 3 cut(s) 724, 788, 794
BstNSI RCATGY 1 cut(s) 946
BstSLI GKGCMC 3 cut(s) 35, 484, 891
BstUI CGCG 3 cut(s) 727, 849, 909
BstV1I GCAGC 4 cut(s) 226, 727, 775, 861
BstV2I GAAGAC 1 cut(s) 836
BstX2I RGATCY 3 cut(s) 199, 827, 853
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 3 cut(s) 199, 827, 853
BsuRI GGCC 2 cut(s) 86, 107
BtgI CCRYGG 2 cut(s) 27, 558
BtsCI GGATG 2 cut(s) 628, 639
BtsIMutI CAGTG 2 cut(s) 347, 594
BtuMI TCGCGA 1 cut(s) 849
Cac8I GCNNGC 2 cut(s) 330, 799
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 2 cut(s) 208, 729
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 898
Csp6I GTAC 4 cut(s) 125, 231, 400, 555
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 3 cut(s) 28, 559, 943
CviQI GTAC 4 cut(s) 125, 231, 400, 555
DdeI CTNAG 3 cut(s) 134, 149, 303
DinI GGCGCC 1 cut(s) 207
DpnI GATC 5 cut(s) 96, 132, 201, 829, 855
DpnII GATC 5 cut(s) 94, 130, 199, 827, 853
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 168, 339
EarI CTCTTC 2 cut(s) 168, 339
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 4 cut(s) 27, 466, 558, 776
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 80
EcoT14I CCWWGG 4 cut(s) 27, 466, 558, 776
EcoT38I GRGCYC 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
ErhI CCWWGG 4 cut(s) 27, 466, 558, 776
FaeI CATG 3 cut(s) 31, 562, 946
FaiI YATR 6 cut(s) 29, 390, 560, 695, 741, 944
FaqI GGGAC 1 cut(s) 896
FatI CATG 3 cut(s) 27, 558, 942
Fnu4HI GCNGC 5 cut(s) 240, 455, 716, 789, 875
FokI GGATG 2 cut(s) 635, 646
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 5 cut(s) 240, 455, 716, 789, 875
FspBI CTAG 3 cut(s) 51, 462, 467
GlaI GCGC 2 cut(s) 207, 728
GluI GCNGC 5 cut(s) 240, 455, 716, 789, 875
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 2 cut(s) 86, 107
HapII CCGG 2 cut(s) 75, 83
HgaI GACGC 1 cut(s) 898
HhaI GCGC 2 cut(s) 208, 729
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 3 cut(s) 31, 562, 946
Hin6I GCGC 2 cut(s) 206, 727
HinP1I GCGC 2 cut(s) 206, 727
HinfI GANTC 3 cut(s) 7, 295, 812
HpaII CCGG 2 cut(s) 75, 83
Hpy166II GTNNAC 2 cut(s) 482, 889
Hpy188I TCNGA 4 cut(s) 152, 294, 361, 769
Hpy188III TCNNGA 5 cut(s) 143, 167, 197, 435, 848
Hpy8I GTNNAC 2 cut(s) 482, 889
HpyAV CCTTC 6 cut(s) 24, 421, 484, 530, 729, 861
HpyCH4III ACNGT 5 cut(s) 120, 314, 589, 618, 882
HpyCH4V TGCA 9 cut(s) 281, 321, 482, 648, 671, 791, 863, 877, 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 724, 788, 794
HpyF3I CTNAG 3 cut(s) 134, 149, 303
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 3 cut(s) 31, 562, 946
HspAI GCGC 2 cut(s) 206, 727
KasI GGCGCC 1 cut(s) 205
KpnI GGTACC 1 cut(s) 234
Kzo9I GATC 5 cut(s) 94, 130, 199, 827, 853
LguI GCTCTTC 2 cut(s) 168, 339
LmnI GCTCC 3 cut(s) 77, 85, 712
LpnPI CCDG 9 cut(s) 88, 96, 156, 182, 188, 236, 312, 448, 822
Lsp1109I GCAGC 4 cut(s) 226, 727, 775, 861
LweI GCATC 1 cut(s) 359
MaeI CTAG 3 cut(s) 51, 462, 467
MaeIII GTNAC 2 cut(s) 246, 702
MalI GATC 5 cut(s) 96, 132, 201, 829, 855
MbiI CCGCTC 1 cut(s) 661
MboI GATC 5 cut(s) 94, 130, 199, 827, 853
MboII GAAGA 5 cut(s) 9, 155, 326, 329, 836
MfeI CAATTG 1 cut(s) 838
MflI RGATCY 3 cut(s) 199, 827, 853
MhlI GDGCHC 5 cut(s) 35, 82, 484, 891, 942
MluCI AATT 4 cut(s) 100, 188, 534, 838
Mly113I GGCGCC 1 cut(s) 206
MlyI GAGTC 2 cut(s) 289, 806
MmeI TCCRAC 4 cut(s) 333, 600, 877, 881
MnlI CCTC 8 cut(s) 67, 118, 294, 499, 552, 560, 844, 923
MroXI GAANNNNTTC 2 cut(s) 192, 537
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 3 cut(s) 368, 563, 924
MspI CCGG 2 cut(s) 75, 83
MunI CAATTG 1 cut(s) 838
MvnI CGCG 3 cut(s) 727, 849, 909
MwoI GCNNNNNNNGC 3 cut(s) 724, 788, 794
NarI GGCGCC 1 cut(s) 206
NcoI CCATGG 2 cut(s) 27, 558
NdeII GATC 5 cut(s) 94, 130, 199, 827, 853
NlaIII CATG 3 cut(s) 31, 562, 946
NlaIV GGNNCC 4 cut(s) 207, 232, 829, 855
NmuCI GTSAC 1 cut(s) 702
NruI TCGCGA 1 cut(s) 849
NspI RCATGY 1 cut(s) 946
NspV TTCGAA 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 167
PciSI GCTCTTC 2 cut(s) 168, 339
PdmI GAANNNNTTC 2 cut(s) 192, 537
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 5 cut(s) 241, 456, 717, 790, 876
PleI GAGTC 2 cut(s) 289, 806
PluTI GGCGCC 1 cut(s) 209
PpsI GAGTC 2 cut(s) 289, 806
Psp124BI GAGCTC 1 cut(s) 82
PspN4I GGNNCC 4 cut(s) 207, 232, 829, 855
PspPI GGNCC 1 cut(s) 47
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 3 cut(s) 199, 827, 853
RruI TCGCGA 1 cut(s) 849
RsaI GTAC 4 cut(s) 126, 232, 401, 556
RsaNI GTAC 4 cut(s) 125, 231, 400, 555
RseI CAYNNNNRTG 3 cut(s) 368, 563, 924
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 2 cut(s) 168, 339
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 5 cut(s) 240, 455, 716, 789, 875
Sau3AI GATC 5 cut(s) 94, 130, 199, 827, 853
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 2 cut(s) 289, 806
SduI GDGCHC 5 cut(s) 35, 82, 484, 891, 942
SfaNI GCATC 1 cut(s) 359
SfoI GGCGCC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 3 cut(s) 368, 563, 924
SmlI CTYRAG 2 cut(s) 167, 380
SmoI CTYRAG 2 cut(s) 167, 380
Sse9I AATT 4 cut(s) 100, 188, 534, 838
SsiI CCGC 4 cut(s) 60, 454, 661, 725
SspDI GGCGCC 1 cut(s) 205
SspMI CTAG 3 cut(s) 51, 462, 467
SstI GAGCTC 1 cut(s) 82
StyI CCWWGG 4 cut(s) 27, 466, 558, 776
TaaI ACNGT 5 cut(s) 120, 314, 589, 618, 882
TaqI TCGA 4 cut(s) 129, 168, 444, 679
TasI AATT 4 cut(s) 100, 188, 534, 838
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 347, 594
TseFI GTSAC 1 cut(s) 702
TseI GCWGC 4 cut(s) 239, 715, 788, 874
Tsp45I GTSAC 1 cut(s) 702
TspGWI ACGGA 2 cut(s) 542, 749
TspRI CASTG 2 cut(s) 347, 594
VneI GTGCAC 2 cut(s) 480, 887
VpaK11BI GGWCC 1 cut(s) 47
XceI RCATGY 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 466
XmnI GAANNNNTTC 2 cut(s) 192, 537
XspI CTAG 3 cut(s) 51, 462, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.