Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Reverse (-)

211213 .. 215150

Gene Structure 3938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00290.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTCCATTCGGAGGTCCAAGCGTTTCAGCACCAAGTGTCGCTGGAGCTCAAGCAAACAAAGATCGAAAAATGGCATCAGCAGAGCACTTGGTGCTTGACCTTAGTAGAGGATCCTATCGATCTTCGAGAAAACGCGCTTCTTGAACTTTCAAAGAACAAGGAATTATTTCAAGATTTGGCTCCTTTCGTGTGGAATTCTTTTGGTACTATTGCTGCACTCATCCAGGAGATAGTTTCAATATACCCTGTCCTATCACCACCAAATCTGACTCCGGCACAATCCAATCGAGTTTGCAATGCTCTTGCTCTTCTCCAGTGTGTAGCTTCACACCCAGATACAAGAATGTTGTTCCTTAATGCTCATATACCTTTATATCTGTATCCTTTTCTCAATACAACAAGCAAGGCAAGACCATTTGAGTACTTAAGGCTTACTAGTTTAGGAGTCATTGGTGCCCTGGTGAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTATCAACAGAAATAATTCCACTGTGCCTTCGCACTATGGAATTGGGCAGTGAACTCTCAAAAACAGTTGCCACATTTATAGTTCAAAAGATTTTGTTGGATGATATGGGCTTGGACTATATTTGTACTACAGCAGAGCGGTTTTTTGCCGTAGGTCGAGTTTTGGGGACCATGGTTGCAGCACTGGCTGATCAACCCTCCTCACGCCTTTTGAAACACATCATCCGATGCTATCTTCGATTGTCAGATAATCCAAGGGCTTGTGATGCTTTAAGAAGTTGCCTTCCAGATGTGTTACGAGATGCTAGCTTTAACAATTTCCTTTGTGAAGATCCAACTACTAGGAGGTGGCTGCAACAACTGCTGCAGAACGTTGGAGTGAGCCGGATTCCTGCACTGCAGGCTGGGGGAGGATTTGATCACATGATGGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

312

Amino Acids

35.01

Weight (kDa)

5.98

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	637
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	637
AclI	AACGTT	1 cut(s)	870
AclWI	GGATC	3 cut(s)	107, 120, 824
AcsI	RAATTY	1 cut(s)	196
AdeI	CACNNNGTG	2 cut(s)	37, 93
AfaI	GTAC	3 cut(s)	208, 425, 625
AfiI	CCNNNNNNNGG	2 cut(s)	13, 466
AflII	CTTAAG	1 cut(s)	427
AgsI	TTSAA	6 cut(s)	146, 153, 173, 240, 584, 712
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	225, 459
AluBI	AGCT	3 cut(s)	49, 326, 807
AluI	AGCT	3 cut(s)	49, 326, 807
Alw21I	GWGCWC	2 cut(s)	51, 89
AlwI	GGATC	3 cut(s)	107, 120, 824
ApeKI	GCWGC	4 cut(s)	215, 677, 850, 862
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	2 cut(s)	168, 513
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	16, 666
AsuHPI	GGTGA	2 cut(s)	249, 475
AsuNHI	GCTAGC	1 cut(s)	803
AvaII	GGWCC	2 cut(s)	16, 666
BaeGI	GKGCMC	1 cut(s)	460
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BamHI	GGATCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	51, 89
BbvI	GCAGC	4 cut(s)	202, 689, 837, 849
BccI	CCATC	1 cut(s)	919
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	2 cut(s)	227, 461
BciVI	GTATCC	1 cut(s)	393
BclI	TGATCA	2 cut(s)	688, 916
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	3 cut(s)	438, 804, 840
BfmI	CTRYAG	3 cut(s)	627, 863, 896
BfrI	CTTAAG	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	393
BisI	GCNGC	4 cut(s)	216, 678, 851, 863
BlsI	GCNGC	4 cut(s)	217, 679, 852, 864
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	227, 461
Bme18I	GGWCC	2 cut(s)	16, 666
BmgT120I	GGNCC	2 cut(s)	16, 666
BmiI	GGNNCC	4 cut(s)	114, 183, 457, 667
BmrFI	CCNGG	2 cut(s)	227, 461
BmsI	GCATC	4 cut(s)	85, 716, 754, 790
BmtI	GCTAGC	1 cut(s)	807
BpmI	CTGGAG	2 cut(s)	65, 299
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	459, 669, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 466
Bse1I	ACTGG	2 cut(s)	316, 687
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	227, 461
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	459, 669, 752
BseGI	GGATG	3 cut(s)	222, 604, 720
BseLI	CCNNNNNNNGG	2 cut(s)	13, 466
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	316, 687
BseRI	GAGGAG	1 cut(s)	688
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	4 cut(s)	202, 689, 837, 849
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	2 cut(s)	201, 876
Bsh1236I	CGCG	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	455
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	51, 89
BsiSI	CCGG	2 cut(s)	275, 883
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	2 cut(s)	13, 466
BsmFI	GGGAC	1 cut(s)	679
Bsp1286I	GDGCHC	3 cut(s)	51, 89, 460
Bsp143I	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	1 cut(s)	637
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	4 cut(s)	114, 183, 457, 667
BspMAI	CTGCAG	2 cut(s)	867, 900
BspOI	GCTAGC	1 cut(s)	807
BspPI	GGATC	3 cut(s)	107, 120, 824
BspQI	GCTCTTC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	427
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	316, 687
BssECI	CCNNGG	3 cut(s)	459, 669, 752
BssMI	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
BssT1I	CCWWGG	2 cut(s)	669, 752
Bst2UI	CCWGG	2 cut(s)	227, 461
Bst4CI	ACNGT	2 cut(s)	522, 565
Bst6I	CTCTTC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	427
BstAPI	GCANNNNNTGC	2 cut(s)	93, 859
BstC8I	GCNNGC	2 cut(s)	805, 900
BstDEI	CTNAG	1 cut(s)	103
BstDSI	CCRYGG	1 cut(s)	669
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	222, 604, 720
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	6 cut(s)	66, 115, 124, 691, 832, 919
BstMBI	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 683, 764, 859, 899
BstNI	CCWGG	2 cut(s)	227, 461
BstSCI	CCNGG	2 cut(s)	225, 459
BstSFI	CTRYAG	3 cut(s)	627, 863, 896
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	4 cut(s)	202, 689, 837, 849
BstX2I	RGATCY	2 cut(s)	112, 829
BstYI	RGATCY	2 cut(s)	112, 829
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	222, 604, 720
BtsI	GCAGTG	2 cut(s)	553, 893
BtsIMutI	CAGTG	5 cut(s)	323, 518, 553, 680, 893
Cac8I	GCNNGC	2 cut(s)	805, 900
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	16, 666
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	207, 424, 624
CviAII	CATG	2 cut(s)	670, 922
CviQI	GTAC	3 cut(s)	207, 424, 624
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	6 cut(s)	65, 114, 123, 690, 831, 918
DpnII	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
DraIII	CACNNNGTG	2 cut(s)	37, 93
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	669, 752
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	16, 666
Eco53kI	GAGCTC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	225, 459
EcoT14I	CCWWGG	2 cut(s)	669, 752
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	669, 752
FaeI	CATG	2 cut(s)	673, 925
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	2 cut(s)	669, 921
FbaI	TGATCA	2 cut(s)	688, 916
Fnu4HI	GCNGC	4 cut(s)	216, 678, 851, 863
FokI	GGATG	3 cut(s)	209, 611, 707
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	216, 678, 851, 863
FspBI	CTAG	3 cut(s)	438, 804, 840
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	4 cut(s)	216, 678, 851, 863
GsaI	CCCAGC	1 cut(s)	906
GsuI	CTGGAG	2 cut(s)	65, 299
HapII	CCGG	2 cut(s)	275, 883
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	673, 925
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	3 cut(s)	271, 447, 886
HpaII	CCGG	2 cut(s)	275, 883
HphI	GGTGA	2 cut(s)	249, 475
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	4 cut(s)	13, 270, 725, 745
Hpy188III	TCNNGA	4 cut(s)	128, 143, 173, 785
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	4 cut(s)	460, 506, 536, 791
HpyCH4III	ACNGT	2 cut(s)	522, 565
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	7 cut(s)	218, 297, 677, 853, 865, 893, 898
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 683, 764, 859, 899
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	2 cut(s)	673, 925
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	2 cut(s)	688, 916
Kzo9I	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	46, 187
Lsp1109I	GCAGC	4 cut(s)	202, 689, 837, 849
LweI	GCATC	4 cut(s)	85, 716, 754, 790
MaeI	CTAG	3 cut(s)	438, 804, 840
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	1 cut(s)	792
MalI	GATC	6 cut(s)	65, 114, 123, 690, 831, 918
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
MboII	GAAGA	4 cut(s)	116, 302, 725, 839
MflI	RGATCY	2 cut(s)	112, 829
MhlI	GDGCHC	3 cut(s)	51, 89, 460
MluCI	AATT	6 cut(s)	164, 196, 513, 539, 814, 931
MlyI	GAGTC	2 cut(s)	265, 456
MmeI	TCCRAC	3 cut(s)	576, 853, 857
MnlI	CCTC	6 cut(s)	7, 103, 706, 709, 837, 902
MroXI	GAANNNNTTC	2 cut(s)	168, 513
MseI	TTAA	4 cut(s)	357, 428, 770, 810
MslI	CAYNNNNRTG	1 cut(s)	926
MspCI	CTTAAG	1 cut(s)	427
MspI	CCGG	2 cut(s)	275, 883
MspR9I	CCNGG	2 cut(s)	227, 461
MvaI	CCWGG	2 cut(s)	227, 461
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	5 cut(s)	93, 683, 764, 859, 899
NcoI	CCATGG	1 cut(s)	669
NdeII	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
NheI	GCTAGC	1 cut(s)	803
NlaIII	CATG	2 cut(s)	673, 925
NlaIV	GGNNCC	4 cut(s)	114, 183, 457, 667
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	2 cut(s)	168, 513
PfeI	GAWTC	1 cut(s)	886
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	217, 679, 852, 864
PleI	GAGTC	2 cut(s)	265, 455
PpsI	GAGTC	2 cut(s)	265, 455
Psp124BI	GAGCTC	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	870
Psp6I	CCWGG	2 cut(s)	225, 459
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	2 cut(s)	225, 459
PspN4I	GGNNCC	4 cut(s)	114, 183, 457, 667
PspPI	GGNCC	2 cut(s)	16, 666
PstI	CTGCAG	2 cut(s)	867, 900
PsuI	RGATCY	2 cut(s)	112, 829
RsaI	GTAC	3 cut(s)	208, 425, 625
RsaNI	GTAC	3 cut(s)	207, 424, 624
RseI	CAYNNNNRTG	1 cut(s)	926
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	357, 428, 770, 810
SatI	GCNGC	4 cut(s)	216, 678, 851, 863
Sau3AI	GATC	6 cut(s)	63, 112, 121, 688, 829, 916
Sau96I	GGNCC	2 cut(s)	16, 666
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	2 cut(s)	265, 456
ScrFI	CCNGG	2 cut(s)	227, 461
SduI	GDGCHC	3 cut(s)	51, 89, 460
SfaNI	GCATC	4 cut(s)	85, 716, 754, 790
SfcI	CTRYAG	3 cut(s)	627, 863, 896
SinI	GGWCC	2 cut(s)	16, 666
SmiMI	CAYNNNNRTG	1 cut(s)	926
SmlI	CTYRAG	2 cut(s)	50, 427
SmoI	CTYRAG	2 cut(s)	50, 427
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	6 cut(s)	164, 196, 513, 539, 814, 931
SsiI	CCGC	1 cut(s)	637
SspMI	CTAG	3 cut(s)	438, 804, 840
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	225, 459
StyI	CCWWGG	2 cut(s)	669, 752
TaaI	ACNGT	2 cut(s)	522, 565
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	6 cut(s)	66, 120, 127, 289, 655, 736
TasI	AATT	6 cut(s)	164, 196, 513, 539, 814, 931
TatI	WGTACW	2 cut(s)	423, 623
TfiI	GAWTC	1 cut(s)	886
Tru1I	TTAA	4 cut(s)	357, 428, 770, 810
Tru9I	TTAA	4 cut(s)	357, 428, 770, 810
TscAI	CASTG	5 cut(s)	323, 525, 553, 687, 900
TseI	GCWGC	4 cut(s)	215, 677, 850, 862
TspRI	CASTG	5 cut(s)	323, 525, 553, 687, 900
Vha464I	CTTAAG	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	16, 666
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	196
XmnI	GAANNNNTTC	2 cut(s)	168, 513
XspI	CTAG	3 cut(s)	438, 804, 840
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.