Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Forward (+)

54710526 .. 54712829

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0376100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCTTCTCTAACCTCTCTTATTATTCAAACTAGGAGTTGCAGCTGCTGGGTAGCTCAGAGTCAGTGGAAGCCAAAAGCATCAGATTACTTGCCAGTTTCTATTACTGATTGTCATATTGAGTTGCACAGTAACCAACCGAAGAGTCCACTAAGTTTGGGGAAGACAATCCTCAGTCTCACATTTCAAGCCATTGTCAGCTGCGCTCTTGCTTTTCAAACCAACACGTCATCACACATTTCACCGGCTTGGCACATTGTTGGGGTGGCCATGGCGATTGCTTTTGCAGCTTGTTTCTCTGGAATTTTCTTAAGGCACTCCTACCCAAATGCTGCAACTATCATAGAGAAAACTGGGTGTGCTTCAGCCGCAATCGCGTTTTTCCTAATGACAAGTATTTTTCTCCCTAGCAATATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

140

Amino Acids

15.02

Weight (kDa)

8.62

Isoelectric Point (pI)

68.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	377
AciI	CCGC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	348
AflII	CTTAAG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	29, 188, 218
AjiI	CACGTC	1 cut(s)	228
AluBI	AGCT	4 cut(s)	45, 56, 201, 290
AluI	AGCT	4 cut(s)	45, 56, 201, 290
Alw26I	GTCTC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	48
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	5 cut(s)	42, 45, 201, 287, 332
ApoI	RAATTY	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	5 cut(s)	32, 54, 188, 299, 319
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	33, 408
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	6 cut(s)	43, 46, 202, 288, 333, 369
BlsI	GCNGC	6 cut(s)	44, 47, 203, 289, 334, 370
BmgBI	CACGTC	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	95, 358
BseDI	CCNNGG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	71, 187
BseNI	ACTGG	2 cut(s)	95, 358
BseXI	GCAGC	5 cut(s)	32, 54, 188, 299, 319
BseYI	CCCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	70, 186
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	419
BspTI	CTTAAG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	95, 358
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	57, 152, 173
BstDSI	CCRYGG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 368, 374
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	5 cut(s)	32, 54, 188, 299, 319
BstV2I	GAAGAC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	270
BtrI	CACGTC	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	71
CaiI	CAGNNNCTG	1 cut(s)	48
CciI	TCATGA	1 cut(s)	419
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	2 cut(s)	271, 420
DdeI	CTNAG	3 cut(s)	57, 152, 173
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	274, 423
FaiI	YATR	4 cut(s)	117, 272, 344, 421
FatI	CATG	2 cut(s)	270, 419
Fnu4HI	GCNGC	6 cut(s)	43, 46, 202, 288, 333, 369
Fsp4HI	GCNGC	6 cut(s)	43, 46, 202, 288, 333, 369
FspBI	CTAG	2 cut(s)	33, 408
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	6 cut(s)	43, 46, 202, 288, 333, 369
GsaI	CCCAGC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	274, 423
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	61, 145
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	60, 85
Hpy188III	TCNNGA	2 cut(s)	300, 420
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	4 cut(s)	42, 127, 287, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 368, 374
HpyF3I	CTNAG	3 cut(s)	57, 152, 173
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	274, 423
HspAI	GCGC	1 cut(s)	204
LpnPI	CCDG	5 cut(s)	34, 108, 258, 285, 339
Lsp1109I	GCAGC	5 cut(s)	32, 54, 188, 299, 319
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	2 cut(s)	33, 408
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	131
MboII	GAAGA	2 cut(s)	154, 175
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	303
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	70, 154
MnlI	CCTC	2 cut(s)	25, 182
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	45, 201
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	287, 368, 374
NcoI	CCATGG	1 cut(s)	270
NlaIII	CATG	2 cut(s)	274, 423
PagI	TCATGA	1 cut(s)	419
PkrI	GCNGC	6 cut(s)	44, 47, 203, 289, 334, 370
PleI	GAGTC	2 cut(s)	69, 153
PpsI	GAGTC	2 cut(s)	69, 153
PspFI	CCCAGC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	48
PvuII	CAGCTG	2 cut(s)	45, 201
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	6 cut(s)	43, 46, 202, 288, 333, 369
SchI	GAGTC	2 cut(s)	70, 154
SetI	ASST	6 cut(s)	17, 47, 58, 203, 230, 292
SfaNI	GCATC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	2 cut(s)	33, 408
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	230
TasI	AATT	1 cut(s)	303
TauI	GCSGC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	5 cut(s)	42, 45, 201, 287, 332
TspRI	CASTG	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	303
XspI	CTAG	2 cut(s)	33, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.