MD03G1196300.v1.1

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0003117
Physical Location & Seq
Reverse (-)
26870531 .. 26875189
4659 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1196300.v1.1.491

Sequence Viewer

Length: 933 bp
ATGAGCGCACCGTTTGGAGGTCCGATCGGTTCCAACCCCAGTGCTGCCGGAGCCCAGCCGAACAGGGACCCTAACATGGCGTCGGCGGAGCAGTTGGTGCTCGAACTCAGCAACCCTCAACTTCGTGAAAACGCGCTCCTTGAACTCTCTAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTGTTGTGGAATTCTTTTGGTACTATTGCTGCTCTGTTACAGGAGATAGTTTCAATATACCCTGTTCTATCACCACCAAATTTAACTCCTGTCCAATCAAATCGAGTTTGCAATGCTCTAGCGCTTCTTCAGTGTGTGGCATCGCACCCAGACACAAGGATGTTATTCCTTAATGCTCATATACCTTTATATTTGTACCCTTTCCTTAATACAACAAGCAAGTCAAGGCCTTTCGAGTACTTGAGGCTTACTAGCTTAGGAGTCATTGGTGCCTTAGTAAAGGTCGATGATACAGAAGTGATTAGTTTTCTTCTATCAACTGAAATAATCCCGTTGTGCCTGCGAACTATGGAAATGGGTAGTGAACTGTCAAAAACAGTGGCTACATTTATTGTTCAAAAGATTTTGTTGGATGATGTGGGCTTGGATTATATCTGTACTACAGCTGAGCGGTTTTTCGCAGTGGGTCGAGTCTTGGGAACCATGGTTGCATCACTTGCTGACCAGCATTCGTCTCGCTTACTAAAACACATTATTCGATGTTATCTTCGATTGTCAGATAACCCAAGGGCTTGTGATGCTTTGAGGAGCTGTCTTCCCGATATGTTGAGAGATGCTACCTTCAGTGTTTCCCTCCGTGAAGATCCAACTACAAGGAGATGGTTGCAGCAGCTACTTCACAACGTTGGGGTTAGTCGGGTTCCTGCGCTTCAGGCTGGAGGAGGATTCGATCATATGATGGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

311

Amino Acids

34.19

Weight (kDa)

6.59

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 32 - 290 6.3e-126 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 452
AccBSI CCGCTC 1 cut(s) 634
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 86, 634
AclI AACGTT 1 cut(s) 867
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 2 cut(s) 193, 262
AcuI CTGAAG 3 cut(s) 296, 790, 878
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 4 cut(s) 205, 380, 422, 622
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 17, 76
AgsI TTSAA 4 cut(s) 143, 170, 237, 581
AluBI AGCT 4 cut(s) 438, 629, 774, 856
AluI AGCT 4 cut(s) 438, 629, 774, 856
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 702
AlwI GGATC 1 cut(s) 821
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 4 cut(s) 44, 212, 850, 853
ApoI RAATTY 2 cut(s) 193, 262
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 4 cut(s) 8, 136, 307, 892
AspS9I GGNCC 2 cut(s) 20, 67
AsuHPI GGTGA 1 cut(s) 246
AvaII GGWCC 2 cut(s) 20, 67
BaeI ACNNNNGTAYC 2 cut(s) 465, 498
BanI GGYRCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 770
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 31, 199, 862, 865
BccI CCATC 2 cut(s) 837, 916
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BcoDI GTCTC 1 cut(s) 702
BfaI CTAG 2 cut(s) 302, 435
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 4 cut(s) 45, 213, 851, 854
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 4 cut(s) 46, 214, 852, 855
BmcAI AGTACT 1 cut(s) 422
Bme18I GGWCC 2 cut(s) 20, 67
BmgT120I GGNCC 2 cut(s) 20, 67
BmiI GGNNCC 8 cut(s) 31, 52, 68, 69, 180, 454, 664, 885
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 4 cut(s) 332, 683, 751, 787
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 770
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 1 cut(s) 439
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 666, 749
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 76
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 666, 749
BseGI GGATG 2 cut(s) 348, 601
BseLI CCNNNNNNNGG 2 cut(s) 17, 76
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 121, 621
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 784, 918
BseXI GCAGC 4 cut(s) 31, 199, 862, 865
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 17, 76
BsmAI GTCTC 1 cut(s) 702
BsmBI CGTCTC 1 cut(s) 702
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 55, 102
Bsp143I GATC 3 cut(s) 24, 826, 913
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 2 cut(s) 86, 634
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 120, 622
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 8 cut(s) 31, 52, 68, 69, 180, 454, 664, 885
BspPI GGATC 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 666, 749
BssMI GATC 3 cut(s) 24, 826, 913
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 2 cut(s) 666, 749
Bst4CI ACNGT 3 cut(s) 12, 552, 562
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 80
BstAPI GCANNNNNTGC 2 cut(s) 97, 680
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 5 cut(s) 107, 150, 439, 457, 630
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 2 cut(s) 348, 601
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 4 cut(s) 8, 136, 307, 892
BstKTI GATC 3 cut(s) 27, 829, 916
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 3 cut(s) 24, 826, 913
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 5 cut(s) 50, 97, 680, 761, 896
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 4 cut(s) 31, 199, 862, 865
BstV2I GAAGAC 1 cut(s) 770
BstX2I RGATCY 1 cut(s) 826
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 826
BsuRI GGCC 1 cut(s) 412
BtgI CCRYGG 1 cut(s) 666
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 2 cut(s) 348, 601
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 5 cut(s) 46, 320, 567, 651, 814
Cac8I GCNNGC 1 cut(s) 524
CfoI GCGC 4 cut(s) 8, 136, 307, 892
Cfr13I GGNCC 2 cut(s) 20, 67
CseI GACGC 1 cut(s) 69
Csp6I GTAC 4 cut(s) 204, 379, 421, 621
CspCI CAANNNNNGTGG 2 cut(s) 543, 578
CviAII CATG 2 cut(s) 76, 667
CviQI GTAC 4 cut(s) 204, 379, 421, 621
DdeI CTNAG 5 cut(s) 107, 150, 439, 457, 630
DpnI GATC 3 cut(s) 26, 828, 915
DpnII GATC 3 cut(s) 24, 826, 913
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 666, 749
Eco147I AGGCCT 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 20, 67
Eco47III AGCGCT 1 cut(s) 306
Eco57I CTGAAG 3 cut(s) 296, 790, 878
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 666, 749
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 666, 749
Esp3I CGTCTC 1 cut(s) 702
FaeI CATG 2 cut(s) 79, 670
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 75, 666
FauNDI CATATG 1 cut(s) 918
Fnu4HI GCNGC 4 cut(s) 45, 213, 851, 854
FokI GGATG 2 cut(s) 355, 608
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 4 cut(s) 45, 213, 851, 854
FspBI CTAG 2 cut(s) 302, 435
GlaI GCGC 4 cut(s) 7, 135, 306, 891
GluI GCNGC 4 cut(s) 45, 213, 851, 854
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 69
HhaI GCGC 4 cut(s) 8, 136, 307, 892
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 79, 670
Hin6I GCGC 4 cut(s) 6, 134, 305, 890
HinP1I GCGC 4 cut(s) 6, 134, 305, 890
HinfI GANTC 3 cut(s) 444, 654, 909
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 2 cut(s) 548, 928
Hpy188I TCNGA 2 cut(s) 24, 742
Hpy188III TCNNGA 3 cut(s) 125, 170, 782
Hpy8I GTNNAC 2 cut(s) 548, 928
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 814
HpyCH4III ACNGT 3 cut(s) 12, 552, 562
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 3 cut(s) 294, 674, 850
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 97, 680, 761, 896
HpyF3I CTNAG 5 cut(s) 107, 150, 439, 457, 630
HpySE526I ACGT 1 cut(s) 867
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 79, 670
HspAI GCGC 4 cut(s) 6, 134, 305, 890
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 24, 826, 913
LmnI GCTCC 5 cut(s) 50, 88, 141, 184, 771
Lsp1109I GCAGC 4 cut(s) 31, 199, 862, 865
LweI GCATC 4 cut(s) 332, 683, 751, 787
MaeI CTAG 2 cut(s) 302, 435
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 1 cut(s) 219
MalI GATC 3 cut(s) 26, 828, 915
MbiI CCGCTC 1 cut(s) 634
MboI GATC 3 cut(s) 24, 826, 913
MboII GAAGA 6 cut(s) 166, 302, 485, 722, 770, 836
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 2 cut(s) 55, 102
MluCI AATT 3 cut(s) 161, 193, 262
MlyI GAGTC 2 cut(s) 453, 663
MmeI TCCRAC 3 cut(s) 57, 573, 854
MnlI CCTC 7 cut(s) 11, 126, 420, 762, 827, 896, 899
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 3 cut(s) 266, 354, 390
MslI CAYNNNNRTG 2 cut(s) 187, 341
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 691
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 50, 97, 680, 761, 896
NcoI CCATGG 1 cut(s) 666
NdeI CATATG 1 cut(s) 918
NdeII GATC 3 cut(s) 24, 826, 913
NlaIII CATG 2 cut(s) 79, 670
NlaIV GGNNCC 8 cut(s) 31, 52, 68, 69, 180, 454, 664, 885
PceI AGGCCT 1 cut(s) 412
PctI GAATGC 1 cut(s) 691
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 909
PkrI GCNGC 4 cut(s) 46, 214, 852, 855
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 2 cut(s) 452, 662
PpsI GAGTC 2 cut(s) 452, 662
PpuMI RGGWCCY 1 cut(s) 67
Psp1406I AACGTT 1 cut(s) 867
Psp5II RGGWCCY 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 8 cut(s) 31, 52, 68, 69, 180, 454, 664, 885
PspPI GGNCC 2 cut(s) 20, 67
PspPPI RGGWCCY 1 cut(s) 67
PsuI RGATCY 1 cut(s) 826
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 4 cut(s) 205, 380, 422, 622
RsaNI GTAC 4 cut(s) 204, 379, 421, 621
RseI CAYNNNNRTG 2 cut(s) 187, 341
SaqAI TTAA 3 cut(s) 266, 354, 390
SatI GCNGC 4 cut(s) 45, 213, 851, 854
Sau3AI GATC 3 cut(s) 24, 826, 913
Sau96I GGNCC 2 cut(s) 20, 67
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 2 cut(s) 453, 663
SduI GDGCHC 2 cut(s) 55, 102
SetI ASST 9 cut(s) 22, 370, 440, 468, 631, 776, 806, 858, 870
SfaNI GCATC 4 cut(s) 332, 683, 751, 787
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 2 cut(s) 20, 67
SmiMI CAYNNNNRTG 2 cut(s) 187, 341
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 3 cut(s) 161, 193, 262
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 2 cut(s) 86, 634
SspMI CTAG 2 cut(s) 302, 435
StuI AGGCCT 1 cut(s) 412
StyI CCWWGG 2 cut(s) 666, 749
TaaI ACNGT 3 cut(s) 12, 552, 562
TaiI ACGT 1 cut(s) 870
TaqI TCGA 8 cut(s) 102, 286, 417, 468, 652, 721, 733, 912
TasI AATT 3 cut(s) 161, 193, 262
TatI WGTACW 2 cut(s) 420, 620
TfiI GAWTC 1 cut(s) 909
Tru1I TTAA 3 cut(s) 266, 354, 390
Tru9I TTAA 3 cut(s) 266, 354, 390
TscAI CASTG 5 cut(s) 46, 320, 567, 651, 814
TseI GCWGC 4 cut(s) 44, 212, 850, 853
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 5 cut(s) 46, 320, 567, 651, 814
VpaK11BI GGWCC 2 cut(s) 20, 67
XapI RAATTY 2 cut(s) 193, 262
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 2 cut(s) 302, 435
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.