Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002848.1

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Reverse (-)

32390 .. 37008

Gene Structure 4619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002848.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgtacgcaccgtttggaggtccgattggttccaaacccggttccgccggagccccacccgacccggaaatggcgtcggcggagcacttggttctcgaactcagcaaccccgagcttcgtgagaatgctctcctcgaactctccaagaagagagaactgtttcaagatttggctccattgttgtggaattctttcggtaccgttgctgctctgttgcaggaaatagtttcaatataccctgttttatcaccaccaaatctaactcctgcccaatcaaatcgagtttgcaatgctcttgctctgctccagtgtgttgcttctcacccagacacaaggatgtatttccttaatgctcatatacctttatatttgtacccttttcttaatactacaagcaagtcaagaccttttgagtacttgaggcttaccagcttaggtgtcattggtgccttggtgaaggttgatgatacagaagtgattagcttccttctctcaacggaaataattcccctatgccttcgcactatggaaatgggcagtgagctgtcaaaaacagtcgccacgtttattgttcaaaagattttgttggatgatgtgggcttggattatatttgtactacagcggagcggttttttgcagtaggtcgagtgttggggaatatggttgcatcacttgctgatcaacattcatcgcgtttattaaaacatatcatccgttgttaccttagattatccgaaaacccgagggcttgtgatgctttaagaagttgtcttcctgacattttaagagatgctaccttcagtgtctgccttcgggaagatcaaactacaaggagatggctgcagcagttgcttcacaatgttggagttagtcgggttcctgggcttcaggctggggcagggtttgatcatatgatggtgaatcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

309

Amino Acids

34.18

Weight (kDa)

6.17

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	2 cut(s)	197, 446
AccBSI	CCGCTC	1 cut(s)	628
AccII	CGCG	1 cut(s)	694
AciI	CCGC	4 cut(s)	45, 80, 623, 628
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	784, 872
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	5 cut(s)	5, 199, 374, 416, 616
AfiI	CCNNNNNNNGG	2 cut(s)	17, 70
AgsI	TTSAA	3 cut(s)	164, 231, 575
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	4 cut(s)	115, 432, 483, 544
AluI	AGCT	4 cut(s)	115, 432, 483, 544
Alw21I	GWGCWC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	807
Ama87I	CYCGRG	2 cut(s)	110, 742
ApeKI	GCWGC	3 cut(s)	206, 841, 844
ApoI	RAATTY	1 cut(s)	187
Asp700I	GAANNNNTTC	3 cut(s)	159, 191, 504
Asp718I	GGTACC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	2 cut(s)	39, 65
AsuHPI	GGTGA	3 cut(s)	240, 314, 466
AvaI	CYCGRG	2 cut(s)	110, 742
AvaII	GGWCC	1 cut(s)	20
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BanI	GGYRCC	2 cut(s)	197, 446
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	193, 828, 856
BccI	CCATC	2 cut(s)	831, 910
BciT130I	CCWGG	1 cut(s)	882
BclI	TGATCA	2 cut(s)	679, 907
BcnI	CCSGG	2 cut(s)	39, 65
BfmI	CTRYAG	2 cut(s)	618, 842
BisI	GCNGC	3 cut(s)	207, 842, 845
BlsI	GCNGC	3 cut(s)	208, 843, 846
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	3 cut(s)	39, 65, 882
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	2 cut(s)	110, 742
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	7 cut(s)	31, 43, 52, 174, 199, 448, 879
BmrFI	CCNGG	3 cut(s)	39, 65, 882
BmsI	GCATC	3 cut(s)	677, 745, 781
BpiI	GAAGAC	1 cut(s)	764
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	2 cut(s)	39, 65
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	450, 743, 881
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 70
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	3 cut(s)	450, 743, 881
BseGI	GGATG	3 cut(s)	342, 595, 711
BseLI	CCNNNNNNNGG	2 cut(s)	17, 70
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	193, 828, 856
BseYI	CCCAGC	1 cut(s)	893
Bsh1236I	CGCG	1 cut(s)	694
BshNI	GGYRCC	2 cut(s)	197, 446
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	2 cut(s)	110, 742
BsiSI	CCGG	3 cut(s)	39, 48, 65
BslI	CCNNNNNNNGG	2 cut(s)	17, 70
BsmI	GAATGC	1 cut(s)	130
BsoBI	CYCGRG	2 cut(s)	110, 742
Bsp1286I	GDGCHC	2 cut(s)	55, 87
Bsp143I	GATC	3 cut(s)	679, 820, 907
BspACI	CCGC	4 cut(s)	45, 80, 623, 628
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	7 cut(s)	31, 43, 52, 174, 199, 448, 879
BspMAI	CTGCAG	1 cut(s)	846
BspT107I	GGYRCC	2 cut(s)	197, 446
BsrBI	CCGCTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	3 cut(s)	450, 743, 881
BssMI	GATC	3 cut(s)	679, 820, 907
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	4 cut(s)	12, 159, 202, 556
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	2 cut(s)	674, 850
BstDEI	CTNAG	3 cut(s)	101, 433, 725
BstF5I	GGATG	3 cut(s)	342, 595, 711
BstFNI	CGCG	1 cut(s)	694
BstKTI	GATC	3 cut(s)	682, 823, 910
BstMBI	GATC	3 cut(s)	679, 820, 907
BstMWI	GCNNNNNNNGC	3 cut(s)	674, 755, 850
BstNI	CCWGG	1 cut(s)	882
BstSCI	CCNGG	3 cut(s)	37, 63, 880
BstSFI	CTRYAG	2 cut(s)	618, 842
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	3 cut(s)	193, 828, 856
BstV2I	GAAGAC	1 cut(s)	764
BstXI	CCANNNNNNTGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	675
BtsCI	GGATG	3 cut(s)	342, 595, 711
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	314, 544, 808
CaiI	CAGNNNCTG	1 cut(s)	807
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	5 cut(s)	4, 198, 373, 415, 615
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviQI	GTAC	5 cut(s)	4, 198, 373, 415, 615
DdeI	CTNAG	3 cut(s)	101, 433, 725
DpnI	GATC	3 cut(s)	681, 822, 909
DpnII	GATC	3 cut(s)	679, 820, 907
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	2 cut(s)	34, 95
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	784, 872
Eco88I	CYCGRG	2 cut(s)	110, 742
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	880
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	450
FauNDI	CATATG	1 cut(s)	912
FbaI	TGATCA	2 cut(s)	679, 907
Fnu4HI	GCNGC	3 cut(s)	207, 842, 845
FokI	GGATG	3 cut(s)	349, 602, 698
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	3 cut(s)	207, 842, 845
GluI	GCNGC	3 cut(s)	207, 842, 845
GsaI	CCCAGC	1 cut(s)	897
GsuI	CTGGAG	1 cut(s)	290
HapII	CCGG	3 cut(s)	39, 48, 65
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	922
HpaII	CCGG	3 cut(s)	39, 48, 65
HphI	GGTGA	3 cut(s)	240, 314, 466
Hpy188I	TCNGA	2 cut(s)	24, 736
Hpy188III	TCNNGA	6 cut(s)	95, 119, 164, 402, 776, 815
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	451, 497, 527, 808, 821
HpyCH4III	ACNGT	4 cut(s)	12, 159, 202, 556
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	5 cut(s)	217, 288, 638, 668, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	674, 755, 850
HpyF3I	CTNAG	3 cut(s)	101, 433, 725
HpySE526I	ACGT	1 cut(s)	563
Hsp92I	GRCGYC	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	201
Ksp22I	TGATCA	2 cut(s)	679, 907
Kzo9I	GATC	3 cut(s)	679, 820, 907
LmnI	GCTCC	5 cut(s)	50, 82, 178, 309, 625
Lsp1109I	GCAGC	3 cut(s)	193, 828, 856
LweI	GCATC	3 cut(s)	677, 745, 781
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	3 cut(s)	681, 822, 909
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	3 cut(s)	679, 820, 907
MboII	GAAGA	3 cut(s)	160, 764, 830
MhlI	GDGCHC	2 cut(s)	55, 87
MluCI	AATT	2 cut(s)	187, 504
MmeI	TCCRAC	2 cut(s)	567, 844
MnlI	CCTC	4 cut(s)	11, 143, 414, 738
MroXI	GAANNNNTTC	3 cut(s)	159, 191, 504
MseI	TTAA	5 cut(s)	348, 384, 701, 761, 785
MslI	CAYNNNNRTG	2 cut(s)	181, 335
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	3 cut(s)	39, 48, 65
MspR9I	CCNGG	3 cut(s)	39, 65, 882
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	3 cut(s)	674, 755, 850
NciI	CCSGG	2 cut(s)	39, 65
NdeI	CATATG	1 cut(s)	912
NdeII	GATC	3 cut(s)	679, 820, 907
NlaIV	GGNNCC	7 cut(s)	31, 43, 52, 174, 199, 448, 879
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	3 cut(s)	159, 191, 504
PfeI	GAWTC	1 cut(s)	922
PkrI	GCNGC	3 cut(s)	208, 843, 846
Psp6I	CCWGG	1 cut(s)	880
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	7 cut(s)	31, 43, 52, 174, 199, 448, 879
PspPI	GGNCC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	807
RsaI	GTAC	5 cut(s)	5, 199, 374, 416, 616
RsaNI	GTAC	5 cut(s)	4, 198, 373, 415, 615
RseI	CAYNNNNRTG	2 cut(s)	181, 335
SaqAI	TTAA	5 cut(s)	348, 384, 701, 761, 785
SatI	GCNGC	3 cut(s)	207, 842, 845
Sau3AI	GATC	3 cut(s)	679, 820, 907
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	416
ScrFI	CCNGG	3 cut(s)	39, 65, 882
SduI	GDGCHC	2 cut(s)	55, 87
SfaNI	GCATC	3 cut(s)	677, 745, 781
SfcI	CTRYAG	2 cut(s)	618, 842
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	181, 335
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	2 cut(s)	187, 504
SsiI	CCGC	4 cut(s)	45, 80, 623, 628
StyD4I	CCNGG	3 cut(s)	37, 63, 880
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	12, 159, 202, 556
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	4 cut(s)	96, 135, 280, 646
TasI	AATT	2 cut(s)	187, 504
TatI	WGTACW	2 cut(s)	414, 614
TfiI	GAWTC	1 cut(s)	922
Tru1I	TTAA	5 cut(s)	348, 384, 701, 761, 785
Tru9I	TTAA	5 cut(s)	348, 384, 701, 761, 785
TscAI	CASTG	3 cut(s)	314, 544, 808
TseI	GCWGC	3 cut(s)	206, 841, 844
TspDTI	ATGAA	1 cut(s)	678
TspGWI	ACGGA	2 cut(s)	512, 704
TspRI	CASTG	3 cut(s)	314, 544, 808
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	3 cut(s)	159, 191, 504
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.