Rw4G037410

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003117
Physical Location & Seq
Forward (+)
64021554 .. 64025320
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037410.1

Sequence Viewer

Length: 960 bp
ATGGCAAATCGGTCCCAGTCCCTTTCAATAAATGTACCGTATGGAGGTCCAAGCGTTTCGGCACCAAGCATCGCTGGAACTCAAGCAAACAAGGATCGGAAAATGGCATCAGCAGAGCTCTTGGTGCTTGACCTAAGTAATCCAGATCTTCGAGAAAATGCGCTTCTTGAACTTTCTAAGAACAAGGAATTATTTCAAGATTTGGCTCCTTTCGTGTGGAAATCTTTTGGTACTATTGCTGCACTCATACAGGAGATAGTTTCAATATACCCTGTTCTGTCGCCACCAAATCTGACTCCAGCACAGTCAAATCGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGCGTGGCTTCCCACCCAGATACAAGGATGCTGTTCCTCAATGCTCATATACCCTTATATTTGTATCCTTTCCTCAATACAACGAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACAAGTTTAGGTGTCATCGGTGCCTTAGTCAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTGTCAACAGAAATAATTCCATTGTGCCTTCGTACTATGGAAATGGGCAGTGAACTCTCAAAAACAGTTGCCACATTTATTGTTCAAAAGATTTTGTTGGATGATATGGGCTTGGATTATATTTGTACAACAGCAGAGCGGTTTTTCGCAGTTGGTCGAGTGTTAGGGAACATGGTTGCAGCACTTGCTGAGCAACCCTCATCACGCCTACTGAAACATATAATTCGATGTTATCTTCGATTGTCAGAAAACCCAAGGGCTTGTGATGCTTTAAGAAGTTGCCTTCCAGATATGTTAAGAGATGCTACTTTTAGTACTTACCTTGTTGAAGATCCAACAACTAGGAAATGGCTGCAATTGTTGCTCCAAAATGTTGGAGGGAGCCGGATTCCTTCGCTACAAGCTGGGGGAGGATTTGATCACATTATGCTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

319

Amino Acids

35.17

Weight (kDa)

6.89

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 41 - 299 4.6e-124 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 61, 479
AccBSI CCGCTC 1 cut(s) 661
AciI CCGC 1 cut(s) 661
AclWI GGATC 2 cut(s) 102, 848
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 6 cut(s) 36, 232, 449, 556, 649, 838
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 6 cut(s) 27, 170, 197, 264, 608, 851
AluBI AGCT 2 cut(s) 118, 926
AluI AGCT 2 cut(s) 118, 926
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 2 cut(s) 102, 848
ApeKI GCWGC 3 cut(s) 239, 701, 874
Asp700I GAANNNNTTC 2 cut(s) 192, 537
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 12, 47
AvaII GGWCC 2 cut(s) 12, 47
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BanI GGYRCC 2 cut(s) 61, 479
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 226, 713, 861
BciVI GTATCC 1 cut(s) 417
BclI TGATCA 1 cut(s) 940
BfaI CTAG 1 cut(s) 864
BfuI GTATCC 1 cut(s) 417
BglII AGATCT 1 cut(s) 145
BisI GCNGC 3 cut(s) 240, 702, 875
BlpI GCTNAGC 1 cut(s) 711
BlsI GCNGC 3 cut(s) 241, 703, 876
BmcAI AGTACT 2 cut(s) 449, 838
Bme18I GGWCC 2 cut(s) 12, 47
BmgT120I GGNCC 2 cut(s) 12, 47
BmiI GGNNCC 5 cut(s) 14, 63, 207, 481, 905
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 5 cut(s) 78, 116, 360, 778, 814
BmuI ACTGGG 1 cut(s) 10
BplI GAGNNNNNCTC 2 cut(s) 704, 736
BpmI CTGGAG 1 cut(s) 282
Bpu1102I GCTNAGC 1 cut(s) 711
BpuEI CTTGAG 2 cut(s) 66, 472
BsaJI CCNNGG 1 cut(s) 776
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 776
BseGI GGATG 2 cut(s) 375, 628
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 226, 713, 861
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 225
BshNI GGYRCC 2 cut(s) 61, 479
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 907
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 647
Bsp143I GATC 4 cut(s) 94, 145, 853, 940
Bsp1720I GCTNAGC 1 cut(s) 711
BspACI CCGC 1 cut(s) 661
BspCNI CTCAG 1 cut(s) 703
BspLI GGNNCC 5 cut(s) 14, 63, 207, 481, 905
BspPI GGATC 2 cut(s) 102, 848
BspQI GCTCTTC 1 cut(s) 339
BspT107I GGYRCC 2 cut(s) 61, 479
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 647
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 776
BssMI GATC 4 cut(s) 94, 145, 853, 940
BssT1I CCWWGG 1 cut(s) 776
Bst4CI ACNGT 3 cut(s) 39, 306, 589
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 2 cut(s) 707, 883
BstAUI TGTACA 1 cut(s) 647
BstDEI CTNAG 4 cut(s) 134, 177, 484, 711
BstF5I GGATG 2 cut(s) 375, 628
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 4 cut(s) 97, 148, 856, 943
BstMBI GATC 4 cut(s) 94, 145, 853, 940
BstMWI GCNNNNNNNGC 4 cut(s) 124, 707, 788, 883
BstV1I GCAGC 3 cut(s) 226, 713, 861
BstX2I RGATCY 2 cut(s) 145, 853
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 2 cut(s) 145, 853
BsuI GTATCC 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 375, 628
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 2 cut(s) 347, 577
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 12, 47
Csp6I GTAC 6 cut(s) 35, 231, 448, 555, 648, 837
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 1 cut(s) 694
CviJI RGCY 9 cut(s) 118, 206, 350, 457, 633, 782, 874, 906, 926
CviKI_1 RGCY 9 cut(s) 118, 206, 350, 457, 633, 782, 874, 906, 926
CviQI GTAC 6 cut(s) 35, 231, 448, 555, 648, 837
DdeI CTNAG 4 cut(s) 134, 177, 484, 711
DpnI GATC 4 cut(s) 96, 147, 855, 942
DpnII GATC 4 cut(s) 94, 145, 853, 940
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 776
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 12, 47
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 776
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 776
FaeI CATG 1 cut(s) 697
FaqI GGGAC 1 cut(s) 4
FatI CATG 1 cut(s) 693
FbaI TGATCA 1 cut(s) 940
Fnu4HI GCNGC 3 cut(s) 240, 702, 875
FokI GGATG 2 cut(s) 382, 635
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 3 cut(s) 240, 702, 875
FspBI CTAG 1 cut(s) 864
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 240, 702, 875
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 282
HapII CCGG 1 cut(s) 907
HhaI GCGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 697
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 2 cut(s) 295, 910
HpaII CCGG 1 cut(s) 907
Hpy166II GTNNAC 2 cut(s) 528, 575
Hpy188I TCNGA 3 cut(s) 99, 294, 769
Hpy188III TCNNGA 6 cut(s) 143, 152, 167, 197, 435, 809
Hpy8I GTNNAC 2 cut(s) 528, 575
HpyAV CCTTC 4 cut(s) 530, 560, 815, 924
HpyCH4III ACNGT 3 cut(s) 39, 306, 589
HpyCH4V TGCA 4 cut(s) 242, 321, 701, 877
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 707, 788, 883
HpyF3I CTNAG 4 cut(s) 134, 177, 484, 711
Hsp92II CATG 1 cut(s) 697
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 4 cut(s) 94, 145, 853, 940
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 211, 891, 903
Lsp1109I GCAGC 3 cut(s) 226, 713, 861
LweI GCATC 5 cut(s) 78, 116, 360, 778, 814
MaeI CTAG 1 cut(s) 864
MalI GATC 4 cut(s) 96, 147, 855, 942
MbiI CCGCTC 1 cut(s) 661
MboI GATC 4 cut(s) 94, 145, 853, 940
MboII GAAGA 5 cut(s) 140, 326, 329, 749, 863
MfeI CAATTG 1 cut(s) 878
MflI RGATCY 2 cut(s) 145, 853
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 5 cut(s) 188, 537, 744, 878, 955
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 3 cut(s) 600, 877, 881
MnlI CCTC 7 cut(s) 38, 389, 425, 447, 730, 893, 926
MroXI GAANNNNTTC 2 cut(s) 192, 537
MseI TTAA 3 cut(s) 794, 818, 958
MspI CCGG 1 cut(s) 907
MunI CAATTG 1 cut(s) 878
MwoI GCNNNNNNNGC 4 cut(s) 124, 707, 788, 883
NdeII GATC 4 cut(s) 94, 145, 853, 940
NlaIII CATG 1 cut(s) 697
NlaIV GGNNCC 5 cut(s) 14, 63, 207, 481, 905
PciSI GCTCTTC 1 cut(s) 339
PdmI GAANNNNTTC 2 cut(s) 192, 537
PfeI GAWTC 1 cut(s) 910
PkrI GCNGC 3 cut(s) 241, 703, 876
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 926
PspN4I GGNNCC 5 cut(s) 14, 63, 207, 481, 905
PspPI GGNCC 2 cut(s) 12, 47
PsuI RGATCY 2 cut(s) 145, 853
RsaI GTAC 6 cut(s) 36, 232, 449, 556, 649, 838
RsaNI GTAC 6 cut(s) 35, 231, 448, 555, 648, 837
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 3 cut(s) 794, 818, 958
SatI GCNGC 3 cut(s) 240, 702, 875
Sau3AI GATC 4 cut(s) 94, 145, 853, 940
Sau96I GGNCC 2 cut(s) 12, 47
ScaI AGTACT 2 cut(s) 449, 838
SchI GAGTC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 49, 120, 135, 472, 495, 846, 928
SfaNI GCATC 5 cut(s) 78, 116, 360, 778, 814
SinI GGWCC 2 cut(s) 12, 47
SmlI CTYRAG 2 cut(s) 81, 451
SmoI CTYRAG 2 cut(s) 81, 451
Sse9I AATT 5 cut(s) 188, 537, 744, 878, 955
SsiI CCGC 1 cut(s) 661
SspMI CTAG 1 cut(s) 864
SstI GAGCTC 1 cut(s) 120
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 3 cut(s) 39, 306, 589
TaqI TCGA 5 cut(s) 151, 313, 679, 748, 760
TasI AATT 5 cut(s) 188, 537, 744, 878, 955
TatI WGTACW 3 cut(s) 447, 647, 836
TfiI GAWTC 1 cut(s) 910
Tru1I TTAA 3 cut(s) 794, 818, 958
Tru9I TTAA 3 cut(s) 794, 818, 958
TscAI CASTG 2 cut(s) 347, 577
TseI GCWGC 3 cut(s) 239, 701, 874
TspRI CASTG 2 cut(s) 347, 577
VpaK11BI GGWCC 2 cut(s) 12, 47
XmnI GAANNNNTTC 2 cut(s) 192, 537
XspI CTAG 1 cut(s) 864
ZrmI AGTACT 2 cut(s) 449, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.