FvH4_3g23230

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003117
Physical Location & Seq
Forward (+)
16301528 .. 16306078
4551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23230.t1

Sequence Viewer

Length: 936 bp
ATGTACGCGCCGTTTGGAGGTCCGATCGGTTCTAAACCTACCGCCGCCGCCGCCGGAGCCCAACCCGACCCTGAAATGGCCTCAGCCGAGCAGTTGGTTCTCGAGCTCAGCAACCCTGAGCTTCGCGAAAATGCTCTCCTCGAACTCTCCAAGAAGAGAGAACTGTTTCAAGATTTGGCTCCATTGTTATGGAATTCTTTCGGCACTGTTGCTGCTCTGTTGCAGGAAATAGTTTCAATATACCCGGTTCTATCCCCACCAAATCTAACTCCTGCCCAATCAAATCGTGTTTGCAATGCGCTTGCTCTTCTTCAGTGTGTTGCGTCACACCCAGACACGAGGATGTATTTCCTTAATGCTCACATACCTTTATATTTGTACCCTTTTCTTAATACAACAAGCAAGTCAAGGCCGTTTGAGTACTTGAGGCTCACCAGTTTAGGTGTCATTGGTGCCTTGGTGAAGGTTGATGACACAGAAGTGATCAGCTTCCTTCTCTCAACAGAAATAATTCCCCTGTGCCTGCGCACTATGGAAATGGGCAGTGAGTTGTCAAAAACAGTCGCCACGTTTATTGTTCAAAAGATTTTGTTGGATGATGTGGGCTTGGATTATATTTGCACTACAGCAGAGCGGTTTTTTGCAGTAGGTCGAGTGTTGGGGAACATGGTTGCATCACTTGCTGAACAACATTCATCGCGTTTATTGAAACATATTATCCGCTGTTACCTTCGATTATCCGAAAACCCAAGAGCATGTGATGCTTTAAGAAGTTGTCTTCCTGACATGTTAAGAGATGCTACCTTCAGTGTTTGCCTTCGTGAAGATCAAACTACAAGGAGATGGCTTCAGCAGTTGCTTCACAATGTTGGAGTTAGTCGGGTTCCTGGGCTTCAGGCTGGGGCAGGGTTTGATCATATGATGATAAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

312

Amino Acids

34.42

Weight (kDa)

6.09

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 32 - 290 1.9e-127 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 452
AccBSI CCGCTC 1 cut(s) 634
AccII CGCG 3 cut(s) 8, 126, 700
AciI CCGC 6 cut(s) 42, 45, 48, 51, 634, 721
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 4 cut(s) 296, 790, 833, 878
AfaI GTAC 3 cut(s) 5, 380, 422
AfiI CCNNNNNNNGG 2 cut(s) 17, 76
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 4 cut(s) 170, 237, 581, 709
AjnI CCWGG 1 cut(s) 886
AleI CACNNNNGTG 1 cut(s) 479
AluBI AGCT 3 cut(s) 106, 121, 489
AluI AGCT 3 cut(s) 106, 121, 489
Alw21I GWGCWC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 2 cut(s) 78, 410
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 3 cut(s) 165, 197, 510
AspLEI GCGC 3 cut(s) 10, 301, 528
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 424, 472
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 452
BanII GRGCYC 2 cut(s) 61, 108
BauI CACGAG 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 770
Bbv12I GWGCWC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 837
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 888
BclI TGATCA 2 cut(s) 483, 913
BcnI CCSGG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 624
BisI GCNGC 4 cut(s) 45, 48, 51, 213
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 4 cut(s) 46, 49, 52, 214
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 245, 888
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 4 cut(s) 58, 180, 454, 885
BmrFI CCNGG 2 cut(s) 245, 888
BmsI GCATC 3 cut(s) 683, 751, 787
BpiI GAAGAC 1 cut(s) 770
Bpu10I CCTNAGC 2 cut(s) 82, 117
Bpu1102I GCTNAGC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 456, 887
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 76
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 888
BseDI CCNNGG 2 cut(s) 456, 887
BseGI GGATG 2 cut(s) 348, 601
BseLI CCNNNNNNNGG 2 cut(s) 17, 76
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 3 cut(s) 96, 108, 121
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 899
Bsh1236I CGCG 3 cut(s) 8, 126, 700
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 80, 412
BshNI GGYRCC 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 2 cut(s) 54, 245
BslI CCNNNNNNNGG 2 cut(s) 17, 76
BsnI GGCC 2 cut(s) 80, 412
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 61, 108
Bsp143I GATC 4 cut(s) 24, 483, 826, 913
Bsp1720I GCTNAGC 1 cut(s) 107
Bsp68I TCGCGA 1 cut(s) 126
BspACI CCGC 6 cut(s) 42, 45, 48, 51, 634, 721
BspANI GGCC 2 cut(s) 80, 412
BspCNI CTCAG 3 cut(s) 95, 109, 120
BspFNI CGCG 3 cut(s) 8, 126, 700
BspLI GGNNCC 4 cut(s) 58, 180, 454, 885
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 456, 887
BssMI GATC 4 cut(s) 24, 483, 826, 913
BssSI CACGAG 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 3 cut(s) 165, 208, 562
Bst6I CTCTTC 2 cut(s) 149, 312
BstAPI GCANNNNNTGC 2 cut(s) 680, 761
BstC8I GCNNGC 2 cut(s) 303, 524
BstDEI CTNAG 3 cut(s) 82, 107, 117
BstF5I GGATG 2 cut(s) 348, 601
BstFNI CGCG 3 cut(s) 8, 126, 700
BstHHI GCGC 3 cut(s) 10, 301, 528
BstKTI GATC 4 cut(s) 27, 486, 829, 916
BstMBI GATC 4 cut(s) 24, 483, 826, 913
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 4 cut(s) 50, 56, 680, 761
BstNI CCWGG 1 cut(s) 888
BstNSI RCATGY 2 cut(s) 759, 790
BstSCI CCNGG 2 cut(s) 243, 886
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 3 cut(s) 8, 126, 700
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 770
BstXI CCANNNNNNTGG 1 cut(s) 189
BsuRI GGCC 2 cut(s) 80, 412
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 348, 601
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 4 cut(s) 204, 320, 550, 814
BtuMI TCGCGA 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 303, 524
CfoI GCGC 3 cut(s) 10, 301, 528
Cfr13I GGNCC 1 cut(s) 20
CseI GACGC 1 cut(s) 312
Csp6I GTAC 3 cut(s) 4, 379, 421
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 3 cut(s) 667, 756, 787
CviQI GTAC 3 cut(s) 4, 379, 421
DdeI CTNAG 3 cut(s) 82, 107, 117
DpnI GATC 4 cut(s) 26, 485, 828, 915
DpnII GATC 4 cut(s) 24, 483, 826, 913
Eam1104I CTCTTC 2 cut(s) 149, 312
EarI CTCTTC 2 cut(s) 149, 312
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 61, 108
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 4 cut(s) 296, 790, 833, 878
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 61, 108
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 3 cut(s) 670, 759, 790
FatI CATG 3 cut(s) 666, 755, 786
FauNDI CATATG 1 cut(s) 918
FbaI TGATCA 2 cut(s) 483, 913
Fnu4HI GCNGC 4 cut(s) 45, 48, 51, 213
FokI GGATG 2 cut(s) 355, 608
FriOI GRGCYC 2 cut(s) 61, 108
Fsp4HI GCNGC 4 cut(s) 45, 48, 51, 213
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 3 cut(s) 9, 300, 527
GluI GCNGC 4 cut(s) 45, 48, 51, 213
GsaI CCCAGC 1 cut(s) 903
HaeIII GGCC 2 cut(s) 80, 412
HapII CCGG 2 cut(s) 54, 245
HgaI GACGC 1 cut(s) 312
HhaI GCGC 3 cut(s) 10, 301, 528
Hin1II CATG 3 cut(s) 670, 759, 790
Hin6I GCGC 3 cut(s) 8, 299, 526
HinP1I GCGC 3 cut(s) 8, 299, 526
HpaII CCGG 2 cut(s) 54, 245
HphI GGTGA 2 cut(s) 424, 472
Hpy188I TCNGA 2 cut(s) 24, 742
Hpy188III TCNNGA 5 cut(s) 101, 125, 170, 782, 821
HpyAV CCTTC 5 cut(s) 457, 503, 740, 814, 827
HpyCH4III ACNGT 3 cut(s) 165, 208, 562
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 5 cut(s) 223, 294, 621, 644, 674
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 56, 680, 761
HpyF3I CTNAG 3 cut(s) 82, 107, 117
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 3 cut(s) 670, 759, 790
HspAI GCGC 3 cut(s) 8, 299, 526
Ksp22I TGATCA 2 cut(s) 483, 913
Kzo9I GATC 4 cut(s) 24, 483, 826, 913
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 56, 184
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 3 cut(s) 683, 751, 787
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 2 cut(s) 324, 725
MalI GATC 4 cut(s) 26, 485, 828, 915
MbiI CCGCTC 1 cut(s) 634
MboI GATC 4 cut(s) 24, 483, 826, 913
MboII GAAGA 5 cut(s) 166, 299, 302, 770, 836
MhlI GDGCHC 2 cut(s) 61, 108
MluCI AATT 2 cut(s) 193, 510
MmeI TCCRAC 2 cut(s) 573, 850
MnlI CCTC 5 cut(s) 11, 91, 149, 333, 420
MroXI GAANNNNTTC 3 cut(s) 165, 197, 510
MseI TTAA 4 cut(s) 354, 390, 767, 791
MslI CAYNNNNRTG 3 cut(s) 187, 341, 479
MspA1I CMGCKG 1 cut(s) 723
MspI CCGG 2 cut(s) 54, 245
MspR9I CCNGG 2 cut(s) 245, 888
MvaI CCWGG 1 cut(s) 888
MvnI CGCG 3 cut(s) 8, 126, 700
MwoI GCNNNNNNNGC 4 cut(s) 50, 56, 680, 761
NciI CCSGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 918
NdeII GATC 4 cut(s) 24, 483, 826, 913
NlaIII CATG 3 cut(s) 670, 759, 790
NlaIV GGNNCC 4 cut(s) 58, 180, 454, 885
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 324
NruI TCGCGA 1 cut(s) 126
NsbI TGCGCA 1 cut(s) 527
NspI RCATGY 2 cut(s) 759, 790
OliI CACNNNNGTG 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 101
PciI ACATGT 1 cut(s) 786
PciSI GCTCTTC 1 cut(s) 312
PdmI GAANNNNTTC 3 cut(s) 165, 197, 510
PkrI GCNGC 4 cut(s) 46, 49, 52, 214
Ple19I CGATCG 1 cut(s) 27
PscI ACATGT 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 886
PspFI CCCAGC 1 cut(s) 899
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 4 cut(s) 58, 180, 454, 885
PspPI GGNCC 1 cut(s) 20
PvuI CGATCG 1 cut(s) 27
RruI TCGCGA 1 cut(s) 126
RsaI GTAC 3 cut(s) 5, 380, 422
RsaNI GTAC 3 cut(s) 4, 379, 421
RseI CAYNNNNRTG 3 cut(s) 187, 341, 479
SacI GAGCTC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 4 cut(s) 354, 390, 767, 791
SatI GCNGC 4 cut(s) 45, 48, 51, 213
Sau3AI GATC 4 cut(s) 24, 483, 826, 913
Sau96I GGNCC 1 cut(s) 20
ScaI AGTACT 1 cut(s) 422
ScrFI CCNGG 2 cut(s) 245, 888
SduI GDGCHC 2 cut(s) 61, 108
SfaNI GCATC 3 cut(s) 683, 751, 787
SfcI CTRYAG 1 cut(s) 624
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 3 cut(s) 187, 341, 479
SmlI CTYRAG 2 cut(s) 101, 424
SmoI CTYRAG 2 cut(s) 101, 424
Sse9I AATT 2 cut(s) 193, 510
SsiI CCGC 6 cut(s) 42, 45, 48, 51, 634, 721
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 243, 886
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 3 cut(s) 165, 208, 562
TaiI ACGT 1 cut(s) 572
TaqI TCGA 4 cut(s) 102, 141, 652, 733
TasI AATT 2 cut(s) 193, 510
TatI WGTACW 1 cut(s) 420
TauI GCSGC 3 cut(s) 47, 50, 53
Tru1I TTAA 4 cut(s) 354, 390, 767, 791
Tru9I TTAA 4 cut(s) 354, 390, 767, 791
TscAI CASTG 4 cut(s) 211, 320, 550, 814
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 684
TspRI CASTG 4 cut(s) 211, 320, 550, 814
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 193
XceI RCATGY 2 cut(s) 759, 790
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 3 cut(s) 165, 197, 510
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.