Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Forward (+)

32552850 .. 32558066

Gene Structure 5217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCAAACCGGCCCCAGTCGCTTTCGATGAATGTATCATTCGGAGGTCCAAGTGCTTCAGTGCCAAGCATTGCTGGAGCTCAAGCAAACAAGGATCGTAAAATGGCATCAGCAGAGCACTTGGTGCTTGACCTAAGTAATCCTGATCTTCGAGAAAATGCGCTTCTTGAACTTTCTAAGAACAAGGAGTTATTTCAAGATTTGGCTCCTTTCGTGTGGAATTCTTTTGGTACTATTGCTGCACTCATACAGGAGATAGTTTCAATTTACCCTGTTCTATCACCACCAAATCTGACTGCGGTACAATCCAATCGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCTTCCCACCCAGATACAAGGATGTTGTTCCTCAATGCTCATATACCTTTATATCTGTATCCTTTTCTCAATACAACGAGCAGGTCAAGACCGTTTGAGTACTTAAGGCTTACTAGTTTAGGAGTCATTGGTGCCCTAGTGAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTGTCAACAGAAATAATTCCACTGTGCCTTCGCACTATGGAAATGGGCAGTGAATTGTCAAAAACAGTTGCCACATTTATAGTTCAAAAGATTTTGTTGGATGATATGGGTTTGGACTATATTTGTACTACAGCAGAGCGGTTTTTTGCAGTAGGTCGGGTTTTAGGGAGCATGGTTACAGCACTTGCTGAGCAACCCTCATCACGCCTTTTGAAACATATCATTCGATGTTATCTTCGCTTGTCAGATAATCCAAGGGCTTGTGATGCTTTAAGAAATTGCCTTCCAGATACGTTAAGAGAGGCTACCTTTAATAATTTCCTTTGTGAAGATCCCACTACAAGGAGGTGGCTGCAACAACTGCTGCAAAACGTTGGAGTGAACCGGCTTCCTGCACTACAGGGTGGGGGAGGATTTGATCACATGATGGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

320

Amino Acids

35.3

Weight (kDa)

6.52

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	661
AciI	CCGC	2 cut(s)	299, 661
AclI	AACGTT	1 cut(s)	894
AclWI	GGATC	2 cut(s)	102, 848
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	42, 323
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	4 cut(s)	232, 303, 449, 649
AfiI	CCNNNNNNNGG	2 cut(s)	490, 864
AflII	CTTAAG	1 cut(s)	451
AgsI	TTSAA	5 cut(s)	170, 197, 264, 608, 736
AhlI	ACTAGT	1 cut(s)	461
AluBI	AGCT	2 cut(s)	80, 350
AluI	AGCT	2 cut(s)	80, 350
Alw21I	GWGCWC	2 cut(s)	82, 120
AlwI	GGATC	2 cut(s)	102, 848
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	239, 874, 886
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	12, 47
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	484
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BanI	GGYRCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	82, 120
BbvI	GCAGC	3 cut(s)	226, 861, 873
BccI	CCATC	1 cut(s)	943
BciVI	GTATCC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	940
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	462, 485
BfmI	CTRYAG	2 cut(s)	651, 920
BfrI	CTTAAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	3 cut(s)	240, 875, 887
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	3 cut(s)	241, 876, 888
BmcAI	AGTACT	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	12, 47
BmiI	GGNNCC	3 cut(s)	14, 207, 481
BmrI	ACTGGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	116, 778
BmuI	ACTGGG	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	704, 736
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 864
Bse118I	RCCGGY	2 cut(s)	9, 906
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	69, 328
BseDI	CCNNGG	1 cut(s)	776
BseGI	GGATG	2 cut(s)	375, 628
BseLI	CCNNNNNNNGG	2 cut(s)	490, 864
BseMI	GCAATG	2 cut(s)	69, 328
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	3 cut(s)	226, 861, 873
BsgI	GTGCAG	2 cut(s)	225, 900
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	82, 120
BsiSI	CCGG	2 cut(s)	10, 907
BslI	CCNNNNNNNGG	2 cut(s)	490, 864
BsnI	GGCC	1 cut(s)	13
Bsp1286I	GDGCHC	3 cut(s)	82, 120, 484
Bsp143I	GATC	4 cut(s)	94, 145, 853, 940
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	2 cut(s)	299, 661
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	703
BspLI	GGNNCC	3 cut(s)	14, 207, 481
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	102, 848
BspQI	GCTCTTC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	2 cut(s)	69, 328
BsrFI	RCCGGY	2 cut(s)	9, 906
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	2 cut(s)	9, 906
BssECI	CCNNGG	1 cut(s)	776
BssMI	GATC	4 cut(s)	94, 145, 853, 940
BssT1I	CCWWGG	1 cut(s)	776
Bst4CI	ACNGT	3 cut(s)	441, 546, 589
Bst6I	CTCTTC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	451
BstAPI	GCANNNNNTGC	2 cut(s)	124, 883
BstDEI	CTNAG	3 cut(s)	134, 177, 711
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	375, 628
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	97, 148, 856, 943
BstMBI	GATC	4 cut(s)	94, 145, 853, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 124, 788, 883
BstSFI	CTRYAG	2 cut(s)	651, 920
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	3 cut(s)	226, 861, 873
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	375, 628
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	4 cut(s)	66, 347, 542, 577
BveI	ACCTGC	1 cut(s)	420
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	9, 906
Cfr13I	GGNCC	2 cut(s)	12, 47
Csp6I	GTAC	4 cut(s)	231, 302, 448, 648
CviAII	CATG	2 cut(s)	694, 946
CviJI	RGCY	9 cut(s)	13, 80, 206, 350, 457, 782, 827, 874, 910
CviKI_1	RGCY	9 cut(s)	13, 80, 206, 350, 457, 782, 827, 874, 910
CviQI	GTAC	4 cut(s)	231, 302, 448, 648
DdeI	CTNAG	3 cut(s)	134, 177, 711
DpnI	GATC	4 cut(s)	96, 147, 855, 942
DpnII	GATC	4 cut(s)	94, 145, 853, 940
DraIII	CACNNNGTG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	776
Eco24I	GRGCYC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	42, 323
EcoICRI	GAGCTC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	776
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	776
FaeI	CATG	2 cut(s)	697, 949
FatI	CATG	2 cut(s)	693, 945
FbaI	TGATCA	1 cut(s)	940
Fnu4HI	GCNGC	3 cut(s)	240, 875, 887
FokI	GGATG	2 cut(s)	382, 635
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	240, 875, 887
FspBI	CTAG	2 cut(s)	462, 485
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	240, 875, 887
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	2 cut(s)	10, 907
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	697, 949
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	1 cut(s)	471
HpaII	CCGG	2 cut(s)	10, 907
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	528, 904
Hpy188I	TCNGA	3 cut(s)	44, 294, 769
Hpy188III	TCNNGA	6 cut(s)	143, 152, 167, 197, 435, 809
Hpy8I	GTNNAC	2 cut(s)	528, 904
HpyAV	CCTTC	4 cut(s)	484, 530, 560, 815
HpyCH4III	ACNGT	3 cut(s)	441, 546, 589
HpyCH4IV	ACGT	2 cut(s)	815, 894
HpyCH4V	TGCA	6 cut(s)	242, 321, 671, 877, 889, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 124, 788, 883
HpyF3I	CTNAG	3 cut(s)	134, 177, 711
HpySE526I	ACGT	2 cut(s)	815, 894
Hsp92II	CATG	2 cut(s)	697, 949
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	4 cut(s)	94, 145, 853, 940
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	77, 211, 690
Lsp1109I	GCAGC	3 cut(s)	226, 861, 873
LweI	GCATC	2 cut(s)	116, 778
MaeI	CTAG	2 cut(s)	462, 485
MaeII	ACGT	2 cut(s)	815, 894
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	4 cut(s)	96, 147, 855, 942
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	4 cut(s)	94, 145, 853, 940
MboII	GAAGA	5 cut(s)	140, 326, 329, 749, 863
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	3 cut(s)	82, 120, 484
MluCI	AATT	7 cut(s)	220, 264, 537, 575, 799, 838, 955
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	2 cut(s)	600, 877
MnlI	CCTC	6 cut(s)	38, 389, 730, 817, 861, 926
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	5 cut(s)	452, 794, 818, 834, 958
MslI	CAYNNNNRTG	1 cut(s)	950
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	2 cut(s)	10, 907
MwoI	GCNNNNNNNGC	4 cut(s)	19, 124, 788, 883
NdeII	GATC	4 cut(s)	94, 145, 853, 940
NlaIII	CATG	2 cut(s)	697, 949
NlaIV	GGNNCC	3 cut(s)	14, 207, 481
PciSI	GCTCTTC	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	537
PkrI	GCNGC	3 cut(s)	241, 876, 888
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	894
PspN4I	GGNNCC	3 cut(s)	14, 207, 481
PspPI	GGNCC	2 cut(s)	12, 47
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	4 cut(s)	232, 303, 449, 649
RsaNI	GTAC	4 cut(s)	231, 302, 448, 648
RseI	CAYNNNNRTG	1 cut(s)	950
SacI	GAGCTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	452, 794, 818, 834, 958
SatI	GCNGC	3 cut(s)	240, 875, 887
Sau3AI	GATC	4 cut(s)	94, 145, 853, 940
Sau96I	GGNCC	2 cut(s)	12, 47
ScaI	AGTACT	1 cut(s)	449
SchI	GAGTC	1 cut(s)	480
SduI	GDGCHC	3 cut(s)	82, 120, 484
SfaNI	GCATC	2 cut(s)	116, 778
SfcI	CTRYAG	2 cut(s)	651, 920
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	950
SmlI	CTYRAG	2 cut(s)	81, 451
SmoI	CTYRAG	2 cut(s)	81, 451
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	7 cut(s)	220, 264, 537, 575, 799, 838, 955
SsiI	CCGC	2 cut(s)	299, 661
SspMI	CTAG	2 cut(s)	462, 485
SstI	GAGCTC	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	3 cut(s)	441, 546, 589
TaiI	ACGT	2 cut(s)	818, 897
TaqI	TCGA	4 cut(s)	26, 151, 313, 748
TasI	AATT	7 cut(s)	220, 264, 537, 575, 799, 838, 955
TatI	WGTACW	2 cut(s)	447, 647
Tru1I	TTAA	5 cut(s)	452, 794, 818, 834, 958
Tru9I	TTAA	5 cut(s)	452, 794, 818, 834, 958
TscAI	CASTG	4 cut(s)	66, 347, 549, 577
TseI	GCWGC	3 cut(s)	239, 874, 886
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	4 cut(s)	66, 347, 549, 577
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	488
XapI	RAATTY	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	462, 485
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.