Rroxscaffold_1G00039770

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003117
Physical Location & Seq
Reverse (-)
57449401 .. 57454498
5098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039770.1

Sequence Viewer

Length: 930 bp
ATGTACGCACCGTTTGGAGGTCCGATTGGTTCCAAACCCGGTTCCGCCGGAGCCCCACCCGACCCGGAAATGGCGTCGGCGGAGCACTTGGTTCTTGAACTCAGCAACCCCGAGCTTCGTGAGAATGCTCTCCTCGAACTCTCCAAGAAGAGAGAACTGTTTCAAGATTTGGCTCCATTGTTGTGGAATTCTTTCGGTACTGTTGCTGCTCTGTTGCAGGAAATAGTTTCAATTTACCCTGTTTTATCACCACCAAATCTAACTCCTGCCCAATCAAATCGAGTTTGCAATGCTCTTGCTCTGCTCCAGTGTGTTGCTTCTCACCCAGACACAAGGATGTATTTCCTTAATGCTCATATACCTTTATATTTGTACCCTTTTCTTAATACCACAAGCAAGTCAAGACCTTTTGAGTACTTGAGGCTTACCAGCTTAGGTGTCATTGGCGCCTTGGTGAAGGTTGATGACACAGAAGTGATTAGCTTCCTTCTCTCAACGGAGATAATTCCTCTATGCCTTCGCACTATGGAAATGGGCAGTGAGCTGTCAAAAACAGTCGCCACATTTATTGTTCAAAAGATTTTGTTGGATGATGTGGGCTTGGATTATATTTGTACTACAGCAGAGCGGTTTTTTGCAGTAGGTCGAGTGTTGGGGAATATGGTTGCATCACTTGCTGATCAACATTCATCACGTTTATTAAAACATATCATCCGTTGTTACCTTAGATTATCCGAAAACCCGAGGGCTTGTGATGCTTTAAGAAGTTGTCTTCCTGACATTTTAAGAGATGCTACCTTCAGTGTCTGCCTTCGGGAAGATCAAACTACAAGGAGATGGCTGCAGCAGTTGCTTCACAATGTTGGAGTTAGTCGGGTTCCTGGGCTTCAGGCTGGGGCAGGGTTTGATCATATGATGGTGAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

309

Amino Acids

34.18

Weight (kDa)

6.17

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 30 - 288 8.5e-127 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 628
AciI CCGC 3 cut(s) 45, 80, 628
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 2 cut(s) 784, 872
AcyI GRCGYC 2 cut(s) 74, 447
AfaI GTAC 5 cut(s) 5, 199, 374, 416, 616
AfiI CCNNNNNNNGG 2 cut(s) 17, 70
AgsI TTSAA 4 cut(s) 98, 164, 231, 575
AjnI CCWGG 1 cut(s) 880
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 115, 432, 483, 544
AluI AGCT 4 cut(s) 115, 432, 483, 544
Alw21I GWGCWC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 807
Ama87I CYCGRG 2 cut(s) 110, 742
ApeKI GCWGC 3 cut(s) 206, 841, 844
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 2 cut(s) 159, 191
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 2 cut(s) 39, 65
AsuHPI GGTGA 3 cut(s) 240, 314, 466
AvaI CYCGRG 2 cut(s) 110, 742
AvaII GGWCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 193, 828, 856
BccI CCATC 2 cut(s) 831, 910
BciT130I CCWGG 1 cut(s) 882
BclI TGATCA 2 cut(s) 679, 907
BcnI CCSGG 2 cut(s) 39, 65
BfmI CTRYAG 2 cut(s) 618, 842
BfoI RGCGCY 1 cut(s) 450
BisI GCNGC 3 cut(s) 207, 842, 845
BlsI GCNGC 3 cut(s) 208, 843, 846
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 3 cut(s) 39, 65, 882
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 2 cut(s) 110, 742
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 6 cut(s) 31, 43, 52, 174, 448, 879
BmrFI CCNGG 3 cut(s) 39, 65, 882
BmsI GCATC 3 cut(s) 677, 745, 781
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 439
BpuMI CCSGG 2 cut(s) 39, 65
BsaHI GRCGYC 2 cut(s) 74, 447
BsaJI CCNNGG 3 cut(s) 450, 743, 881
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 70
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 3 cut(s) 450, 743, 881
BseGI GGATG 3 cut(s) 342, 595, 711
BseLI CCNNNNNNNGG 2 cut(s) 17, 70
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 3 cut(s) 193, 828, 856
BseYI CCCAGC 1 cut(s) 893
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 2 cut(s) 110, 742
BsiSI CCGG 3 cut(s) 39, 48, 65
BslI CCNNNNNNNGG 2 cut(s) 17, 70
BsmI GAATGC 1 cut(s) 130
BsoBI CYCGRG 2 cut(s) 110, 742
Bsp1286I GDGCHC 2 cut(s) 55, 87
Bsp143I GATC 3 cut(s) 679, 820, 907
BspACI CCGC 3 cut(s) 45, 80, 628
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 6 cut(s) 31, 43, 52, 174, 448, 879
BspMAI CTGCAG 1 cut(s) 846
BspT107I GGYRCC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 450, 743, 881
BssMI GATC 3 cut(s) 679, 820, 907
BssNI GRCGYC 2 cut(s) 74, 447
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 4 cut(s) 12, 159, 202, 556
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 2 cut(s) 74, 447
BstAPI GCANNNNNTGC 2 cut(s) 674, 850
BstDEI CTNAG 3 cut(s) 101, 433, 725
BstF5I GGATG 3 cut(s) 342, 595, 711
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 3 cut(s) 682, 823, 910
BstMBI GATC 3 cut(s) 679, 820, 907
BstMWI GCNNNNNNNGC 3 cut(s) 674, 755, 850
BstNI CCWGG 1 cut(s) 882
BstSCI CCNGG 3 cut(s) 37, 63, 880
BstSFI CTRYAG 2 cut(s) 618, 842
BstV1I GCAGC 3 cut(s) 193, 828, 856
BstV2I GAAGAC 1 cut(s) 764
BstXI CCANNNNNNTGG 1 cut(s) 183
BtsCI GGATG 3 cut(s) 342, 595, 711
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 3 cut(s) 314, 544, 808
CaiI CAGNNNCTG 1 cut(s) 807
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 20
CseI GACGC 1 cut(s) 63
Csp6I GTAC 5 cut(s) 4, 198, 373, 415, 615
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviQI GTAC 5 cut(s) 4, 198, 373, 415, 615
DdeI CTNAG 3 cut(s) 101, 433, 725
DinI GGCGCC 1 cut(s) 448
DpnI GATC 3 cut(s) 681, 822, 909
DpnII GATC 3 cut(s) 679, 820, 907
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 2 cut(s) 34, 95
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 784, 872
Eco88I CYCGRG 2 cut(s) 110, 742
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 55
EgeI GGCGCC 1 cut(s) 448
EheI GGCGCC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 450
FauNDI CATATG 1 cut(s) 912
FbaI TGATCA 2 cut(s) 679, 907
Fnu4HI GCNGC 3 cut(s) 207, 842, 845
FokI GGATG 3 cut(s) 349, 602, 698
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 3 cut(s) 207, 842, 845
GlaI GCGC 1 cut(s) 448
GluI GCNGC 3 cut(s) 207, 842, 845
GsaI CCCAGC 1 cut(s) 897
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 450
HapII CCGG 3 cut(s) 39, 48, 65
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 2 cut(s) 74, 447
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HinfI GANTC 1 cut(s) 922
HpaII CCGG 3 cut(s) 39, 48, 65
HphI GGTGA 3 cut(s) 240, 314, 466
Hpy188I TCNGA 2 cut(s) 24, 736
Hpy188III TCNNGA 6 cut(s) 95, 119, 164, 402, 776, 815
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 5 cut(s) 451, 497, 527, 808, 821
HpyCH4III ACNGT 4 cut(s) 12, 159, 202, 556
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 5 cut(s) 217, 288, 638, 668, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 674, 755, 850
HpyF3I CTNAG 3 cut(s) 101, 433, 725
HpySE526I ACGT 1 cut(s) 694
Hsp92I GRCGYC 2 cut(s) 74, 447
HspAI GCGC 1 cut(s) 447
KasI GGCGCC 1 cut(s) 446
Ksp22I TGATCA 2 cut(s) 679, 907
Kzo9I GATC 3 cut(s) 679, 820, 907
LmnI GCTCC 4 cut(s) 50, 82, 178, 309
Lsp1109I GCAGC 3 cut(s) 193, 828, 856
LweI GCATC 3 cut(s) 677, 745, 781
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 1 cut(s) 719
MalI GATC 3 cut(s) 681, 822, 909
MbiI CCGCTC 1 cut(s) 628
MboI GATC 3 cut(s) 679, 820, 907
MboII GAAGA 3 cut(s) 160, 764, 830
MhlI GDGCHC 2 cut(s) 55, 87
MluCI AATT 3 cut(s) 187, 231, 504
Mly113I GGCGCC 1 cut(s) 447
MmeI TCCRAC 2 cut(s) 567, 844
MnlI CCTC 5 cut(s) 11, 143, 414, 519, 738
MroXI GAANNNNTTC 2 cut(s) 159, 191
MseI TTAA 5 cut(s) 348, 384, 701, 761, 785
MslI CAYNNNNRTG 3 cut(s) 181, 335, 473
MspI CCGG 3 cut(s) 39, 48, 65
MspR9I CCNGG 3 cut(s) 39, 65, 882
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 3 cut(s) 674, 755, 850
NarI GGCGCC 1 cut(s) 447
NciI CCSGG 2 cut(s) 39, 65
NdeI CATATG 1 cut(s) 912
NdeII GATC 3 cut(s) 679, 820, 907
NlaIV GGNNCC 6 cut(s) 31, 43, 52, 174, 448, 879
OliI CACNNNNGTG 1 cut(s) 473
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 2 cut(s) 159, 191
PfeI GAWTC 1 cut(s) 922
PkrI GCNGC 3 cut(s) 208, 843, 846
PluTI GGCGCC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 880
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 6 cut(s) 31, 43, 52, 174, 448, 879
PspPI GGNCC 1 cut(s) 20
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 1 cut(s) 807
RsaI GTAC 5 cut(s) 5, 199, 374, 416, 616
RsaNI GTAC 5 cut(s) 4, 198, 373, 415, 615
RseI CAYNNNNRTG 3 cut(s) 181, 335, 473
SaqAI TTAA 5 cut(s) 348, 384, 701, 761, 785
SatI GCNGC 3 cut(s) 207, 842, 845
Sau3AI GATC 3 cut(s) 679, 820, 907
Sau96I GGNCC 1 cut(s) 20
ScaI AGTACT 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 39, 65, 882
SduI GDGCHC 2 cut(s) 55, 87
SfaNI GCATC 3 cut(s) 677, 745, 781
SfcI CTRYAG 2 cut(s) 618, 842
SfoI GGCGCC 1 cut(s) 448
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 3 cut(s) 181, 335, 473
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 3 cut(s) 187, 231, 504
SsiI CCGC 3 cut(s) 45, 80, 628
SspDI GGCGCC 1 cut(s) 446
StyD4I CCNGG 3 cut(s) 37, 63, 880
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 4 cut(s) 12, 159, 202, 556
TaiI ACGT 1 cut(s) 697
TaqI TCGA 3 cut(s) 135, 280, 646
TasI AATT 3 cut(s) 187, 231, 504
TatI WGTACW 2 cut(s) 414, 614
TfiI GAWTC 1 cut(s) 922
Tru1I TTAA 5 cut(s) 348, 384, 701, 761, 785
Tru9I TTAA 5 cut(s) 348, 384, 701, 761, 785
TscAI CASTG 3 cut(s) 314, 544, 808
TseI GCWGC 3 cut(s) 206, 841, 844
TspDTI ATGAA 1 cut(s) 678
TspGWI ACGGA 2 cut(s) 512, 704
TspRI CASTG 3 cut(s) 314, 544, 808
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 187
XmnI GAANNNNTTC 2 cut(s) 159, 191
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.