Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Reverse (-)

16162723 .. 16166736

Gene Structure 4014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGTGCACCGTTTGGAGGTCCGATCGGTTCCAACCCCAGTGCTGCCGGAGCCCAGCCGAACAGGGACCCTAACATGGCGTCGGCGGAGCAGTTGGTGCTCGAACTCAGCAACCCTCAACTTCGTGAAAACGCGCTCCTTGAACTCTCTAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTGTTGTGGAATTCTTTTGGTACTATTGCTGCTCTGTTACAGGAGATAGTTTCAATATACCCTGTTCTTTCACCACCAAATTTAACTCCTGTCCAATCAAATCGAGTTTGCAATGCTCTAGCGCTTCTTCAGTGTGTGGCATCGCACCCAGACACAAGGATGTTATTCCTTAATGCTCATATACCTTTATATTTGTACCCTTTCCTTAATACAACAAGCAAGTCAAGGCCTTTCGAGTACTTGAGGCTTACTAGCTTAGGAGTCATTGGTGCCTTAGTGAAGGTCGATGATACAGAAGTGATTAGTTTTCTTCTATCAACTGAAATAATTCCGTTGTGCCTGCGAACTATGGAAATGGGTAGTGAACTGTCAAAAACAGTGGCTACATTTATTGTTCAAAAGATTTTGTTGGATGATGTGGGCTTGGATTATATCTGTACTACAGCTGAGCGGTTTTTCGCAGTGGGTCGAGTCTTGGGAACCATGGTTGCATCACTTGCTGACCAGCATTCGTCTCGCTTACTAAAACACATTATTCGATGTTATCTTCGATTGTCAGATAACCATAGGGCTTGTGATGCTTTGAGGAGCTGTCTTCCCGATATGTTGAGAGATACTACCTTCAGTGTTTCCCTCCGTGAAGATCCAACTACAAGGAGATGGTTGCAGCAGCTACTTCACAACGTTGGTGTTAGTCGGGTTCCTGCGCTTCAGGCTGGAGGAGGATTTGATCATATGATGGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

311

Amino Acids

34.26

Weight (kDa)

6.65

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	1 cut(s)	634
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	86, 634
AclI	AACGTT	1 cut(s)	867
AclWI	GGATC	1 cut(s)	821
AcsI	RAATTY	2 cut(s)	193, 262
AcuI	CTGAAG	3 cut(s)	296, 790, 878
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	4 cut(s)	205, 380, 422, 622
AfeI	AGCGCT	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	17, 76
AgsI	TTSAA	4 cut(s)	143, 170, 237, 581
AluBI	AGCT	4 cut(s)	438, 629, 774, 856
AluI	AGCT	4 cut(s)	438, 629, 774, 856
Alw21I	GWGCWC	2 cut(s)	10, 102
Alw26I	GTCTC	1 cut(s)	702
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	821
Aor51HI	AGCGCT	1 cut(s)	306
AoxI	GGCC	1 cut(s)	410
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	4 cut(s)	44, 212, 850, 853
ApoI	RAATTY	2 cut(s)	193, 262
Asp700I	GAANNNNTTC	2 cut(s)	165, 510
AspLEI	GCGC	3 cut(s)	136, 307, 892
AspS9I	GGNCC	2 cut(s)	20, 67
AsuHPI	GGTGA	1 cut(s)	246
AvaII	GGWCC	2 cut(s)	20, 67
BaeGI	GKGCMC	1 cut(s)	10
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	10, 102
BbvI	GCAGC	4 cut(s)	31, 199, 862, 865
BccI	CCATC	2 cut(s)	837, 916
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BclI	TGATCA	1 cut(s)	913
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	2 cut(s)	302, 435
BfmI	CTRYAG	1 cut(s)	624
BfoI	RGCGCY	1 cut(s)	308
BisI	GCNGC	4 cut(s)	45, 213, 851, 854
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	4 cut(s)	46, 214, 852, 855
BmcAI	AGTACT	1 cut(s)	422
Bme18I	GGWCC	2 cut(s)	20, 67
BmgT120I	GGNCC	2 cut(s)	20, 67
BmiI	GGNNCC	8 cut(s)	31, 52, 68, 69, 180, 454, 664, 885
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	3 cut(s)	332, 683, 751
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	770
BpmI	CTGGAG	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	439
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	445
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 76
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	2 cut(s)	348, 601
BseLI	CCNNNNNNNGG	2 cut(s)	17, 76
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	121, 621
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	784, 918
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	4 cut(s)	31, 199, 862, 865
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	10, 102
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	17, 76
BsmAI	GTCTC	1 cut(s)	702
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	3 cut(s)	10, 55, 102
Bsp143I	GATC	3 cut(s)	24, 826, 913
Bsp1720I	GCTNAGC	1 cut(s)	630
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	2 cut(s)	86, 634
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	120, 622
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	8 cut(s)	31, 52, 68, 69, 180, 454, 664, 885
BspPI	GGATC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	3 cut(s)	24, 826, 913
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	12, 552, 562
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	80
BstAPI	GCANNNNNTGC	2 cut(s)	97, 680
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	5 cut(s)	107, 150, 439, 457, 630
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	348, 601
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	3 cut(s)	136, 307, 892
BstKTI	GATC	3 cut(s)	27, 829, 916
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	3 cut(s)	24, 826, 913
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 97, 680, 761, 896
BstSFI	CTRYAG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	10
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	31, 199, 862, 865
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	348, 601
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	5 cut(s)	46, 320, 567, 651, 814
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	3 cut(s)	136, 307, 892
Cfr13I	GGNCC	2 cut(s)	20, 67
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	204, 379, 421, 621
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviAII	CATG	2 cut(s)	76, 667
CviQI	GTAC	4 cut(s)	204, 379, 421, 621
DdeI	CTNAG	5 cut(s)	107, 150, 439, 457, 630
DpnI	GATC	3 cut(s)	26, 828, 915
DpnII	GATC	3 cut(s)	24, 826, 913
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	20, 67
Eco47III	AGCGCT	1 cut(s)	306
Eco57I	CTGAAG	3 cut(s)	296, 790, 878
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	666
Esp3I	CGTCTC	1 cut(s)	702
FaeI	CATG	2 cut(s)	79, 670
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	75, 666
FauNDI	CATATG	1 cut(s)	918
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	4 cut(s)	45, 213, 851, 854
FokI	GGATG	2 cut(s)	355, 608
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	4 cut(s)	45, 213, 851, 854
FspBI	CTAG	2 cut(s)	302, 435
GlaI	GCGC	3 cut(s)	135, 306, 891
GluI	GCNGC	4 cut(s)	45, 213, 851, 854
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	921
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	3 cut(s)	136, 307, 892
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	79, 670
Hin6I	GCGC	3 cut(s)	134, 305, 890
HinP1I	GCGC	3 cut(s)	134, 305, 890
HinfI	GANTC	2 cut(s)	444, 654
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	3 cut(s)	8, 548, 928
Hpy188I	TCNGA	2 cut(s)	24, 742
Hpy188III	TCNNGA	3 cut(s)	125, 170, 782
Hpy8I	GTNNAC	3 cut(s)	8, 548, 928
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	457, 814
HpyCH4III	ACNGT	3 cut(s)	12, 552, 562
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	4 cut(s)	8, 294, 674, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 97, 680, 761, 896
HpyF3I	CTNAG	5 cut(s)	107, 150, 439, 457, 630
HpySE526I	ACGT	1 cut(s)	867
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	79, 670
HspAI	GCGC	3 cut(s)	134, 305, 890
KflI	GGGWCCC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	3 cut(s)	24, 826, 913
LmnI	GCTCC	5 cut(s)	50, 88, 141, 184, 771
Lsp1109I	GCAGC	4 cut(s)	31, 199, 862, 865
LweI	GCATC	3 cut(s)	332, 683, 751
MaeI	CTAG	2 cut(s)	302, 435
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	26, 828, 915
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	3 cut(s)	24, 826, 913
MboII	GAAGA	6 cut(s)	166, 302, 485, 722, 770, 836
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	3 cut(s)	10, 55, 102
MluCI	AATT	4 cut(s)	161, 193, 262, 510
MlyI	GAGTC	2 cut(s)	453, 663
MmeI	TCCRAC	3 cut(s)	57, 573, 854
MnlI	CCTC	7 cut(s)	11, 126, 420, 762, 827, 896, 899
MroXI	GAANNNNTTC	2 cut(s)	165, 510
MseI	TTAA	3 cut(s)	266, 354, 390
MslI	CAYNNNNRTG	2 cut(s)	187, 341
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	691
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	5 cut(s)	50, 97, 680, 761, 896
NcoI	CCATGG	1 cut(s)	666
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	3 cut(s)	24, 826, 913
NlaIII	CATG	2 cut(s)	79, 670
NlaIV	GGNNCC	8 cut(s)	31, 52, 68, 69, 180, 454, 664, 885
PceI	AGGCCT	1 cut(s)	412
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	2 cut(s)	165, 510
PkrI	GCNGC	4 cut(s)	46, 214, 852, 855
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	2 cut(s)	452, 662
PpsI	GAGTC	2 cut(s)	452, 662
PpuMI	RGGWCCY	1 cut(s)	67
Psp1406I	AACGTT	1 cut(s)	867
Psp5II	RGGWCCY	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	8 cut(s)	31, 52, 68, 69, 180, 454, 664, 885
PspPI	GGNCC	2 cut(s)	20, 67
PspPPI	RGGWCCY	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	826
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	4 cut(s)	205, 380, 422, 622
RsaNI	GTAC	4 cut(s)	204, 379, 421, 621
RseI	CAYNNNNRTG	2 cut(s)	187, 341
SaqAI	TTAA	3 cut(s)	266, 354, 390
SatI	GCNGC	4 cut(s)	45, 213, 851, 854
Sau3AI	GATC	3 cut(s)	24, 826, 913
Sau96I	GGNCC	2 cut(s)	20, 67
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	2 cut(s)	453, 663
SduI	GDGCHC	3 cut(s)	10, 55, 102
SetI	ASST	9 cut(s)	22, 370, 440, 468, 631, 776, 806, 858, 870
SfaNI	GCATC	3 cut(s)	332, 683, 751
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	2 cut(s)	20, 67
SmiMI	CAYNNNNRTG	2 cut(s)	187, 341
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	4 cut(s)	161, 193, 262, 510
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	86, 634
SspMI	CTAG	2 cut(s)	302, 435
StuI	AGGCCT	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	3 cut(s)	12, 552, 562
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	7 cut(s)	102, 286, 417, 468, 652, 721, 733
TasI	AATT	4 cut(s)	161, 193, 262, 510
TatI	WGTACW	2 cut(s)	420, 620
Tru1I	TTAA	3 cut(s)	266, 354, 390
Tru9I	TTAA	3 cut(s)	266, 354, 390
TscAI	CASTG	5 cut(s)	46, 320, 567, 651, 814
TseI	GCWGC	4 cut(s)	44, 212, 850, 853
TspGWI	ACGGA	2 cut(s)	504, 809
TspRI	CASTG	5 cut(s)	46, 320, 567, 651, 814
VneI	GTGCAC	1 cut(s)	6
VpaK11BI	GGWCC	2 cut(s)	20, 67
XapI	RAATTY	2 cut(s)	193, 262
XmnI	GAANNNNTTC	2 cut(s)	165, 510
XspI	CTAG	2 cut(s)	302, 435
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.