Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Reverse (-)

54669885 .. 54670684

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0376000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAAGTCTATACTATCCAAGGCAGCTATCTTGGCTTTCTTAGTCGTCATTGCATCTTGTGTGCCATTCTCATTAGCAGCAAGGGCAGCAGCAGTAGATGAATTAGAGTCCGAACCTGCTCCAGTGGACGATGTGCCACCACAAGCTCATGGAGCCGGCAAAAAATGTTCAACTGTCAAAGACTGCAAAAGCACCATATGCATCGATTTAGATGGATGGCATCCTGGATGTGTTAATAGTACATGCCAATGTGTACACGATGTGCCACCACAAACTGAAGTAACCGAGGAAACATGTTCCACCGATGAAGACTGCAAAATCTCTAAATGCAACAAAAGATTTGGATGGCATCTACAATGTGTTAATGGTACATGCAAATGTGTACTCACTGAGCCGCCACAAGCTGAACCAACTGCTTCTGCGGTGGTAACAGAAGACGAAACATGTACCACTGTTAAGGACTGCAAAAGAACCAAATGCATCTCAAAATTAGGAGTGCATCTCCAATGTGTTAATGGGACCTGCAAATGTGTACACAATGGACTACCTCAGGCAGTAGAGAAAGTAGGATGTCCCCCATCTGGGTGCTACGAAATTTCATGTGTCGAGGGATGCCCCGAACGTGTTCACGGCAGATGCCAATGTGTAGACCCGCCCGGTTCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

223

Amino Acids

23.73

Weight (kDa)

5.49

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	127, 533
AccI	GTMKAC	1 cut(s)	651
AciI	CCGC	3 cut(s)	398, 425, 656
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	6 cut(s)	244, 258, 373, 387, 451, 537
AfiI	CCNNNNNNNGG	2 cut(s)	584, 585
AflIII	ACRYGT	3 cut(s)	296, 446, 625
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	29, 149, 407
AluI	AGCT	3 cut(s)	29, 149, 407
ApeKI	GCWGC	4 cut(s)	26, 80, 89, 92
ApoI	RAATTY	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	660
AvaII	GGWCC	1 cut(s)	522
AxyI	CCTNAGG	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	318, 444
BbvI	GCAGC	4 cut(s)	38, 92, 101, 104
BccI	CCATC	4 cut(s)	209, 213, 342, 589
BceAI	ACGGC	1 cut(s)	649
BciT130I	CCWGG	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	660
BfuAI	ACCTGC	2 cut(s)	127, 533
BisI	GCNGC	5 cut(s)	27, 81, 90, 93, 398
BlsI	GCNGC	5 cut(s)	28, 82, 91, 94, 399
Bme1390I	CCNGG	2 cut(s)	228, 660
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	2 cut(s)	157, 523
BmrFI	CCNGG	2 cut(s)	228, 660
BmsI	GCATC	8 cut(s)	65, 213, 232, 361, 492, 511, 605, 629
BpiI	GAAGAC	2 cut(s)	318, 444
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	660
Bsa29I	ATCGAT	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	21, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 585
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	125
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	21, 288
BseGI	GGATG	6 cut(s)	223, 224, 236, 353, 578, 620
BseLI	CCNNNNNNNGG	2 cut(s)	584, 585
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	384, 566
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	4 cut(s)	38, 92, 101, 104
BshVI	ATCGAT	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	159, 660
BslFI	GGGAC	2 cut(s)	535, 561
BslI	CCNNNNNNNGG	2 cut(s)	584, 585
BsmFI	GGGAC	2 cut(s)	535, 561
Bsp1407I	TGTACA	2 cut(s)	256, 535
BspACI	CCGC	3 cut(s)	398, 425, 656
BspCNI	CTCAG	2 cut(s)	385, 565
BspDI	ATCGAT	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	157, 523
BspMI	ACCTGC	2 cut(s)	127, 533
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	256, 535
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	21, 288
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	178, 457
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstAUI	TGTACA	2 cut(s)	256, 535
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	43, 393, 552
BstF5I	GGATG	6 cut(s)	223, 224, 236, 353, 578, 620
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 86, 89, 155, 201
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	4 cut(s)	249, 300, 378, 450
BstSCI	CCNGG	2 cut(s)	226, 658
BstV1I	GCAGC	4 cut(s)	38, 92, 101, 104
BstV2I	GAAGAC	2 cut(s)	318, 444
Bsu15I	ATCGAT	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	207
BtsCI	GGATG	6 cut(s)	223, 224, 236, 353, 578, 620
BtsIMutI	CAGTG	3 cut(s)	132, 390, 453
BveI	ACCTGC	2 cut(s)	127, 533
Cac8I	GCNNGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	522
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	6 cut(s)	243, 257, 372, 386, 450, 536
CviAII	CATG	6 cut(s)	152, 246, 297, 375, 447, 603
CviJI	RGCY	6 cut(s)	29, 38, 149, 158, 397, 407
CviKI_1	RGCY	6 cut(s)	29, 38, 149, 158, 397, 407
CviQI	GTAC	6 cut(s)	243, 257, 372, 386, 450, 536
DdeI	CTNAG	3 cut(s)	43, 393, 552
DraIII	CACNNNGTG	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	2 cut(s)	206, 485
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	6 cut(s)	155, 249, 300, 378, 450, 606
FaiI	YATR	9 cut(s)	14, 153, 200, 202, 247, 298, 376, 448, 604
FaqI	GGGAC	2 cut(s)	535, 561
FatI	CATG	6 cut(s)	151, 245, 296, 374, 446, 602
FauI	CCCGC	1 cut(s)	663
FauNDI	CATATG	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	5 cut(s)	27, 81, 90, 93, 398
FokI	GGATG	6 cut(s)	210, 231, 243, 360, 585, 627
Fsp4HI	GCNGC	5 cut(s)	27, 81, 90, 93, 398
GluI	GCNGC	5 cut(s)	27, 81, 90, 93, 398
GsuI	CTGGAG	1 cut(s)	108
HapII	CCGG	2 cut(s)	159, 660
Hin1II	CATG	6 cut(s)	155, 249, 300, 378, 450, 606
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	159, 660
Hpy166II	GTNNAC	8 cut(s)	130, 257, 259, 386, 536, 538, 631, 652
Hpy188I	TCNGA	1 cut(s)	115
Hpy8I	GTNNAC	8 cut(s)	130, 257, 259, 386, 536, 538, 631, 652
HpyCH4III	ACNGT	2 cut(s)	178, 457
HpyCH4IV	ACGT	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 86, 89, 155, 201
HpyF3I	CTNAG	3 cut(s)	43, 393, 552
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	6 cut(s)	155, 249, 300, 378, 450, 606
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	127, 155
LpnPI	CCDG	8 cut(s)	132, 138, 172, 213, 240, 538, 539, 570
Lsp1109I	GCAGC	4 cut(s)	38, 92, 101, 104
LweI	GCATC	8 cut(s)	65, 213, 232, 361, 492, 511, 605, 629
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	2 cut(s)	283, 430
MboII	GAAGA	2 cut(s)	323, 449
MluCI	AATT	3 cut(s)	104, 491, 597
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	283, 561, 604
Mph1103I	ATGCAT	2 cut(s)	206, 485
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	4 cut(s)	237, 366, 459, 516
MslI	CAYNNNNRTG	3 cut(s)	250, 379, 586
MspI	CCGG	2 cut(s)	159, 660
MspR9I	CCNGG	2 cut(s)	228, 660
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	5 cut(s)	35, 86, 89, 155, 201
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	660
NdeI	CATATG	1 cut(s)	200
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	6 cut(s)	155, 249, 300, 378, 450, 606
NlaIV	GGNNCC	2 cut(s)	157, 523
NsiI	ATGCAT	2 cut(s)	206, 485
NspI	RCATGY	4 cut(s)	249, 300, 378, 450
PciI	ACATGT	2 cut(s)	296, 446
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	627
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	28, 82, 91, 94, 399
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	522
PscI	ACATGT	2 cut(s)	296, 446
Psp5II	RGGWCCY	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	157, 523
PspPI	GGNCC	1 cut(s)	522
PspPPI	RGGWCCY	1 cut(s)	522
RsaI	GTAC	6 cut(s)	244, 258, 373, 387, 451, 537
RsaNI	GTAC	6 cut(s)	243, 257, 372, 386, 450, 536
RseI	CAYNNNNRTG	3 cut(s)	250, 379, 586
SaqAI	TTAA	4 cut(s)	237, 366, 459, 516
SatI	GCNGC	5 cut(s)	27, 81, 90, 93, 398
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	228, 660
SetI	ASST	7 cut(s)	31, 121, 151, 409, 527, 553, 628
SfaNI	GCATC	8 cut(s)	65, 213, 232, 361, 492, 511, 605, 629
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	3 cut(s)	250, 379, 586
Sse9I	AATT	3 cut(s)	104, 491, 597
SsiI	CCGC	3 cut(s)	398, 425, 656
StyD4I	CCNGG	2 cut(s)	226, 658
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	178, 457
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	2 cut(s)	207, 609
TasI	AATT	3 cut(s)	104, 491, 597
TatI	WGTACW	4 cut(s)	242, 256, 385, 535
TauI	GCSGC	1 cut(s)	400
Tru1I	TTAA	4 cut(s)	237, 366, 459, 516
Tru9I	TTAA	4 cut(s)	237, 366, 459, 516
TscAI	CASTG	3 cut(s)	132, 397, 460
TseI	GCWGC	4 cut(s)	26, 80, 89, 92
TspDTI	ATGAA	4 cut(s)	117, 324, 591, 654
TspRI	CASTG	3 cut(s)	132, 397, 460
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	4 cut(s)	249, 300, 378, 450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	627
Zsp2I	ATGCAT	2 cut(s)	206, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.