Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Forward (+)

13780011 .. 13785169

Gene Structure 5159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G219100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGCGCACCGTTTGGAGACCCGATCGCTTCTAATTCCAGTGCAGCCGGAGCTCAGCCTAACAAGGAGCCAAAAATGGCGTCAGCTGAGCAATTGGTGCTCGAACTCAGTAACCCTGATCTTCGTGAAAATGCCCTCCTTGAACTCTCGAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTGTTGTGGAATTCTTTTGGTACTATTGCTGCTCTGCTACAGGAGATAGTTTCAATTTACCCTGTTCTGTCACCACCAAATTTAACTCCTGCTCAATCAAATCGAGTTTGCAATGCTCTAGCTCTTCTTCAGTGTGTGGCTTCTCACCCAGACACAAGGATGTTATTCCTCAATGCTCATATACCTTTATATTTGTACCCTTTCCTTAATACAACAAGCAAGTCAAGGCCTTTCGAGTACTTGAGGCTTACTAGCTTAGGTGTCATTGGTGCCTTAGTGAAGGTCGATGATACAGAAGTGATTAGTTTTCTTCTGTCAACAGAAATAATTCCACTGTGCCTGCGCACTATGGAAATGGGTAGTGAACTCTCAAAAACAGTGGCCACATTTATTGTTCAAAAGATTTTGTTAGATGATGTGGGCTTGGATTATATTTGTACTACAGCTGAGCGGTTTTTTGCAGTAGGTCGAGTCTTGGGAACCATGGTAGCATCACTTGCTGAGCAGCATTCATCGCGCTTATTAAAACATATTATCCGATGTTATCTTCGATTGTCAGATAACGCAAGGGCTTGTGATGCTTTAAGAAGTTGTCTTCCAGAGACATTAAGAGATGCTACCTTCAGTGGTTGCCTTCGTGAAGATCCAACTACAAGGAGATGGCTGCAGCAGTTGCTTCACAATGTTGCGGTTAGTCGGGTTCCTGCACTTCAGGCCGGAGGAGGGTTTGATCATATGATGGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

311

Amino Acids

34.17

Weight (kDa)

6.31

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	1 cut(s)	634
AccII	CGCG	1 cut(s)	700
AciI	CCGC	2 cut(s)	634, 872
AclWI	GGATC	1 cut(s)	821
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	193, 262
AcuI	CTGAAG	3 cut(s)	296, 790, 878
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	4 cut(s)	205, 380, 422, 622
AfiI	CCNNNNNNNGG	1 cut(s)	906
AgsI	TTSAA	4 cut(s)	143, 170, 237, 581
AluBI	AGCT	5 cut(s)	53, 86, 305, 438, 629
AluI	AGCT	5 cut(s)	53, 86, 305, 438, 629
Alw21I	GWGCWC	2 cut(s)	55, 102
Alw26I	GTCTC	2 cut(s)	12, 779
AlwI	GGATC	1 cut(s)	821
AoxI	GGCC	3 cut(s)	410, 564, 897
ApeKI	GCWGC	5 cut(s)	44, 212, 688, 847, 850
ApoI	RAATTY	2 cut(s)	193, 262
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
Asp700I	GAANNNNTTC	2 cut(s)	165, 510
AspLEI	GCGC	3 cut(s)	8, 528, 702
AsuHPI	GGTGA	2 cut(s)	246, 320
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BalI	TGGCCA	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	55, 102
BbvI	GCAGC	5 cut(s)	56, 199, 700, 834, 862
BccI	CCATC	2 cut(s)	837, 916
BclI	TGATCA	1 cut(s)	913
BcoDI	GTCTC	2 cut(s)	12, 779
BfaI	CTAG	2 cut(s)	302, 435
BfmI	CTRYAG	3 cut(s)	221, 624, 848
BisI	GCNGC	5 cut(s)	45, 213, 689, 848, 851
BlpI	GCTNAGC	4 cut(s)	54, 87, 630, 684
BlsI	GCNGC	5 cut(s)	46, 214, 690, 849, 852
BmcAI	AGTACT	1 cut(s)	422
BmiI	GGNNCC	5 cut(s)	69, 180, 454, 664, 885
BmsI	GCATC	3 cut(s)	683, 751, 787
BpiI	GAAGAC	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	439
Bpu1102I	GCTNAGC	4 cut(s)	54, 87, 630, 684
BpuEI	CTTGAG	1 cut(s)	445
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	1 cut(s)	906
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	906
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	5 cut(s)	68, 78, 121, 621, 675
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	918
BseXI	GCAGC	5 cut(s)	56, 199, 700, 834, 862
BsgI	GTGCAG	2 cut(s)	63, 873
Bsh1236I	CGCG	1 cut(s)	700
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	412, 566, 899
BshNI	GGYRCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	55, 102
BsiSI	CCGG	2 cut(s)	48, 900
BslI	CCNNNNNNNGG	1 cut(s)	906
BsmAI	GTCTC	2 cut(s)	12, 779
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	3 cut(s)	412, 566, 899
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	55, 102
Bsp143I	GATC	4 cut(s)	24, 118, 826, 913
Bsp1720I	GCTNAGC	4 cut(s)	54, 87, 630, 684
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	2 cut(s)	634, 872
BspANI	GGCC	3 cut(s)	412, 566, 899
BspCNI	CTCAG	5 cut(s)	67, 79, 120, 622, 676
BspFNI	CGCG	1 cut(s)	700
BspLI	GGNNCC	5 cut(s)	69, 180, 454, 664, 885
BspMAI	CTGCAG	1 cut(s)	852
BspPI	GGATC	1 cut(s)	821
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	4 cut(s)	24, 118, 826, 913
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	12, 519, 562
Bst6I	CTCTTC	2 cut(s)	149, 312
BstACI	GRCGYC	1 cut(s)	80
BstAPI	GCANNNNNTGC	3 cut(s)	97, 680, 856
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	7 cut(s)	54, 87, 107, 439, 457, 630, 684
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	700
BstHHI	GCGC	3 cut(s)	8, 528, 702
BstKTI	GATC	4 cut(s)	27, 121, 829, 916
BstMAI	GTCTC	2 cut(s)	12, 779
BstMBI	GATC	4 cut(s)	24, 118, 826, 913
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 97, 680, 697, 761, 856, 896
BstSFI	CTRYAG	3 cut(s)	221, 624, 848
BstUI	CGCG	1 cut(s)	700
BstV1I	GCAGC	5 cut(s)	56, 199, 700, 834, 862
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	826
BsuRI	GGCC	3 cut(s)	412, 566, 899
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	5 cut(s)	46, 320, 515, 567, 814
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	3 cut(s)	8, 528, 702
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	204, 379, 421, 621
CspCI	CAANNNNNGTGG	4 cut(s)	543, 556, 578, 591
CviAII	CATG	1 cut(s)	667
CviQI	GTAC	4 cut(s)	204, 379, 421, 621
DdeI	CTNAG	7 cut(s)	54, 87, 107, 439, 457, 630, 684
DpnI	GATC	4 cut(s)	26, 120, 828, 915
DpnII	GATC	4 cut(s)	24, 118, 826, 913
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	2 cut(s)	149, 312
EarI	CTCTTC	2 cut(s)	149, 312
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	3 cut(s)	296, 790, 878
EcoICRI	GAGCTC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	1 cut(s)	670
FaiI	YATR	9 cut(s)	363, 365, 373, 533, 615, 668, 714, 918, 920
FatI	CATG	1 cut(s)	666
FauNDI	CATATG	1 cut(s)	918
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	5 cut(s)	45, 213, 689, 848, 851
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	5 cut(s)	45, 213, 689, 848, 851
FspBI	CTAG	2 cut(s)	302, 435
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	3 cut(s)	7, 527, 701
GluI	GCNGC	5 cut(s)	45, 213, 689, 848, 851
HaeIII	GGCC	3 cut(s)	412, 566, 899
HapII	CCGG	2 cut(s)	48, 900
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	3 cut(s)	8, 528, 702
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	670
Hin6I	GCGC	3 cut(s)	6, 526, 700
HinP1I	GCGC	3 cut(s)	6, 526, 700
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	1 cut(s)	654
HpaII	CCGG	2 cut(s)	48, 900
HphI	GGTGA	2 cut(s)	246, 320
Hpy166II	GTNNAC	3 cut(s)	501, 548, 928
Hpy188I	TCNGA	2 cut(s)	722, 742
Hpy188III	TCNNGA	5 cut(s)	125, 148, 170, 782, 821
Hpy8I	GTNNAC	3 cut(s)	501, 548, 928
HpyAV	CCTTC	3 cut(s)	457, 814, 827
HpyCH4III	ACNGT	3 cut(s)	12, 519, 562
HpyCH4V	TGCA	5 cut(s)	44, 294, 644, 850, 890
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 97, 680, 697, 761, 856, 896
HpyF3I	CTNAG	7 cut(s)	54, 87, 107, 439, 457, 630, 684
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	670
HspAI	GCGC	3 cut(s)	6, 526, 700
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	4 cut(s)	24, 118, 826, 913
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	3 cut(s)	50, 67, 184
Lsp1109I	GCAGC	5 cut(s)	56, 199, 700, 834, 862
LweI	GCATC	3 cut(s)	683, 751, 787
MaeI	CTAG	2 cut(s)	302, 435
MaeIII	GTNAC	2 cut(s)	110, 252
MalI	GATC	4 cut(s)	26, 120, 828, 915
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	4 cut(s)	24, 118, 826, 913
MboII	GAAGA	9 cut(s)	113, 163, 166, 299, 302, 485, 722, 770, 836
MfeI	CAATTG	1 cut(s)	92
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	55, 102
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	7 cut(s)	34, 92, 161, 193, 237, 262, 510
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	854
MnlI	CCTC	5 cut(s)	146, 362, 420, 896, 899
Mox20I	TGGCCA	1 cut(s)	566
MroXI	GAANNNNTTC	2 cut(s)	165, 510
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	5 cut(s)	266, 390, 707, 767, 791
MslI	CAYNNNNRTG	2 cut(s)	187, 341
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	2 cut(s)	86, 629
MspI	CCGG	2 cut(s)	48, 900
MunI	CAATTG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	691
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	7 cut(s)	50, 97, 680, 697, 761, 856, 896
NcoI	CCATGG	1 cut(s)	666
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	4 cut(s)	24, 118, 826, 913
NlaIII	CATG	1 cut(s)	670
NlaIV	GGNNCC	5 cut(s)	69, 180, 454, 664, 885
NmuCI	GTSAC	1 cut(s)	252
NsbI	TGCGCA	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	312
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	2 cut(s)	165, 510
PkrI	GCNGC	5 cut(s)	46, 214, 690, 849, 852
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
Psp124BI	GAGCTC	1 cut(s)	55
PspN4I	GGNNCC	5 cut(s)	69, 180, 454, 664, 885
PstI	CTGCAG	1 cut(s)	852
PsuI	RGATCY	1 cut(s)	826
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	2 cut(s)	86, 629
RsaI	GTAC	4 cut(s)	205, 380, 422, 622
RsaNI	GTAC	4 cut(s)	204, 379, 421, 621
RseI	CAYNNNNRTG	2 cut(s)	187, 341
SacI	GAGCTC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	5 cut(s)	266, 390, 707, 767, 791
SatI	GCNGC	5 cut(s)	45, 213, 689, 848, 851
Sau3AI	GATC	4 cut(s)	24, 118, 826, 913
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	1 cut(s)	663
SduI	GDGCHC	2 cut(s)	55, 102
SfaNI	GCATC	3 cut(s)	683, 751, 787
SfcI	CTRYAG	3 cut(s)	221, 624, 848
SmiMI	CAYNNNNRTG	2 cut(s)	187, 341
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	7 cut(s)	34, 92, 161, 193, 237, 262, 510
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	634, 872
SspMI	CTAG	2 cut(s)	302, 435
SstI	GAGCTC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	3 cut(s)	12, 519, 562
TaqI	TCGA	7 cut(s)	102, 149, 286, 417, 468, 652, 733
TasI	AATT	7 cut(s)	34, 92, 161, 193, 237, 262, 510
TatI	WGTACW	2 cut(s)	420, 620
Tru1I	TTAA	5 cut(s)	266, 390, 707, 767, 791
Tru9I	TTAA	5 cut(s)	266, 390, 707, 767, 791
TscAI	CASTG	5 cut(s)	46, 320, 522, 567, 814
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	5 cut(s)	44, 212, 688, 847, 850
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	684
TspRI	CASTG	5 cut(s)	46, 320, 522, 567, 814
XapI	RAATTY	2 cut(s)	193, 262
XmnI	GAANNNNTTC	2 cut(s)	165, 510
XspI	CTAG	2 cut(s)	302, 435
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.