MD13G1003400.v1.1

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0003117
Physical Location & Seq
Reverse (-)
225659 .. 231010
5352 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1003400.v1.1.491

Sequence Viewer

Length: 960 bp
ATGGCAAACCGGCCCCAGTCGCTTTCATTAAATGTTCAATTCGGAGGTCCAAGCGTTTCAGCACCAAGTGTCGCTGGAGCTCAAGCAAACAAAGATCGTAAAATGGCATCCGCAGAGCACTTGGTGCTTGACCTGAGTAATCCTGATCTTCGAGAAAACGCACTTCTTGAACTTTCAAAGAACAAGGAATTATTTCAAGATTTGGCTCCTTTCGTGTGGAATTCTTTTGGTACTATTGCTGCACTCATCCAGGAGATAGTTTCAATATACCCTGTCCTATCACCACCAAATCTGACTCCGGCACAATCCAATCGAGTTTGCAATGCTCTTGCTCTTCTCCAGTGTGTAGCTTCACACCCAGATACAAGAATGTTGTTCCTTAATGCTCATATACCTTTATATCTGTATCCTTTTCTCAATACAACAAGCAAGGCAAGACCATTTGAGTACTTAAGGCTTACTAGTTTAGGAGTCATTGGTGCCCTGGTGAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTATCAACAGAAATAATTCCACTGTGCCTTCGCACTATGGAATTGGGTAGTGAACTCTCAAAAACAGTTGCCACATTTATAGTTCAAAAGATTCTGTTGGATGATATGGGATTGGACTATATTTGTACTACAGCAGAGCGGTTTTTTGCTGTAGGTCGAGTTTTGGGGACCATGGTTGCAGCACTGGCTGATCAACCCTCCTCACGCCTTTTGAAACACATCATCCGATGCTATCTTCGATTGTCAGATAATCCAAGGGCTTGTGATGCTTTAAGAAGTTGCCTTCCAGATGTGTTACGAGATGCTAGCTTTAACAATTTCCTTTGTGAAGATCCAACTACTAGAAGGTGGCTGCAACAACTGCTGCAGAACGTTGGAGTGAGCCGGATTCCTGCACTGCAGGCTGGGGGAGGATTTGATCACATGATGGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

320

Amino Acids

35.15

Weight (kDa)

6.52

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 41 - 299 2.9e-124 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 661
AciI CCGC 2 cut(s) 111, 661
AclI AACGTT 1 cut(s) 894
AclWI GGATC 1 cut(s) 848
AcsI RAATTY 1 cut(s) 220
AdeI CACNNNGTG 2 cut(s) 68, 124
AfaI GTAC 3 cut(s) 232, 449, 649
AfiI CCNNNNNNNGG 1 cut(s) 490
AflII CTTAAG 1 cut(s) 451
AgsI TTSAA 7 cut(s) 38, 170, 177, 197, 264, 608, 736
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 2 cut(s) 249, 483
AluBI AGCT 3 cut(s) 80, 350, 831
AluI AGCT 3 cut(s) 80, 350, 831
Alw21I GWGCWC 2 cut(s) 82, 120
AlwI GGATC 1 cut(s) 848
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 4 cut(s) 239, 701, 874, 886
ApoI RAATTY 1 cut(s) 220
Asp700I GAANNNNTTC 2 cut(s) 192, 537
AspS9I GGNCC 3 cut(s) 12, 47, 690
AsuHPI GGTGA 2 cut(s) 273, 499
AsuNHI GCTAGC 1 cut(s) 827
AvaII GGWCC 2 cut(s) 47, 690
BaeGI GKGCMC 1 cut(s) 484
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 82, 120
BbvI GCAGC 4 cut(s) 226, 713, 861, 873
BccI CCATC 1 cut(s) 943
BciT130I CCWGG 2 cut(s) 251, 485
BciVI GTATCC 1 cut(s) 417
BclI TGATCA 2 cut(s) 712, 940
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 3 cut(s) 462, 828, 864
BfmI CTRYAG 4 cut(s) 651, 672, 887, 920
BfrI CTTAAG 1 cut(s) 451
BfuI GTATCC 1 cut(s) 417
BisI GCNGC 4 cut(s) 240, 702, 875, 887
BlsI GCNGC 4 cut(s) 241, 703, 876, 888
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 251, 485
Bme18I GGWCC 2 cut(s) 47, 690
BmgT120I GGNCC 3 cut(s) 12, 47, 690
BmiI GGNNCC 4 cut(s) 14, 207, 481, 691
BmrFI CCNGG 2 cut(s) 251, 485
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 4 cut(s) 116, 740, 778, 814
BmtI GCTAGC 1 cut(s) 831
BmuI ACTGGG 1 cut(s) 10
BpmI CTGGAG 2 cut(s) 96, 323
BpuEI CTTGAG 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 483, 693, 776
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 3 cut(s) 16, 340, 711
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 2 cut(s) 251, 485
BseDI CCNNGG 3 cut(s) 483, 693, 776
BseGI GGATG 4 cut(s) 107, 246, 628, 744
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 3 cut(s) 16, 340, 711
BseRI GAGGAG 1 cut(s) 712
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 4 cut(s) 226, 713, 861, 873
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 2 cut(s) 225, 900
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 2 cut(s) 82, 120
BsiSI CCGG 3 cut(s) 10, 299, 907
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 1 cut(s) 490
BsmFI GGGAC 1 cut(s) 703
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 3 cut(s) 82, 120, 484
Bsp143I GATC 5 cut(s) 94, 145, 712, 853, 940
Bsp19I CCATGG 1 cut(s) 693
BspACI CCGC 2 cut(s) 111, 661
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 14, 207, 481, 691
BspMAI CTGCAG 2 cut(s) 891, 924
BspOI GCTAGC 1 cut(s) 831
BspPI GGATC 1 cut(s) 848
BspQI GCTCTTC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 479
BspTI CTTAAG 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 3 cut(s) 16, 340, 711
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 3 cut(s) 483, 693, 776
BssMI GATC 5 cut(s) 94, 145, 712, 853, 940
BssT1I CCWWGG 2 cut(s) 693, 776
Bst2UI CCWGG 2 cut(s) 251, 485
Bst4CI ACNGT 2 cut(s) 546, 589
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 451
BstAPI GCANNNNNTGC 2 cut(s) 124, 883
BstC8I GCNNGC 2 cut(s) 829, 924
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 693
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 4 cut(s) 107, 246, 628, 744
BstKTI GATC 5 cut(s) 97, 148, 715, 856, 943
BstMBI GATC 5 cut(s) 94, 145, 712, 853, 940
BstMWI GCNNNNNNNGC 6 cut(s) 19, 124, 707, 788, 883, 923
BstNI CCWGG 2 cut(s) 251, 485
BstSCI CCNGG 2 cut(s) 249, 483
BstSFI CTRYAG 4 cut(s) 651, 672, 887, 920
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 4 cut(s) 226, 713, 861, 873
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
BsuI GTATCC 1 cut(s) 417
BsuRI GGCC 1 cut(s) 13
BtgI CCRYGG 1 cut(s) 693
BtsCI GGATG 4 cut(s) 107, 246, 628, 744
BtsI GCAGTG 1 cut(s) 917
BtsIMutI CAGTG 4 cut(s) 347, 542, 704, 917
Cac8I GCNNGC 2 cut(s) 829, 924
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 12, 47, 690
Csp6I GTAC 3 cut(s) 231, 448, 648
CviAII CATG 2 cut(s) 694, 946
CviQI GTAC 3 cut(s) 231, 448, 648
DdeI CTNAG 1 cut(s) 134
DpnI GATC 5 cut(s) 96, 147, 714, 855, 942
DpnII GATC 5 cut(s) 94, 145, 712, 853, 940
DraIII CACNNNGTG 2 cut(s) 68, 124
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 693, 776
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 47, 690
Eco53kI GAGCTC 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 249, 483
EcoT14I CCWWGG 2 cut(s) 693, 776
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 693, 776
FaeI CATG 2 cut(s) 697, 949
FaqI GGGAC 1 cut(s) 703
FatI CATG 2 cut(s) 693, 945
FbaI TGATCA 2 cut(s) 712, 940
Fnu4HI GCNGC 4 cut(s) 240, 702, 875, 887
FokI GGATG 4 cut(s) 94, 233, 635, 731
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 4 cut(s) 240, 702, 875, 887
FspBI CTAG 3 cut(s) 462, 828, 864
GluI GCNGC 4 cut(s) 240, 702, 875, 887
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 2 cut(s) 96, 323
HaeIII GGCC 1 cut(s) 13
HapII CCGG 3 cut(s) 10, 299, 907
Hin1II CATG 2 cut(s) 697, 949
HinfI GANTC 4 cut(s) 295, 471, 613, 910
HpaII CCGG 3 cut(s) 10, 299, 907
HphI GGTGA 2 cut(s) 273, 499
Hpy166II GTNNAC 1 cut(s) 575
Hpy188I TCNGA 4 cut(s) 44, 294, 749, 769
Hpy188III TCNNGA 5 cut(s) 143, 152, 167, 197, 809
Hpy8I GTNNAC 1 cut(s) 575
HpyAV CCTTC 5 cut(s) 484, 530, 560, 815, 861
HpyCH4III ACNGT 2 cut(s) 546, 589
HpyCH4IV ACGT 1 cut(s) 894
HpyCH4V TGCA 7 cut(s) 242, 321, 701, 877, 889, 917, 922
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 124, 707, 788, 883, 923
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 894
Hsp92II CATG 2 cut(s) 697, 949
Ksp22I TGATCA 2 cut(s) 712, 940
Kzo9I GATC 5 cut(s) 94, 145, 712, 853, 940
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 77, 211
Lsp1109I GCAGC 4 cut(s) 226, 713, 861, 873
LweI GCATC 4 cut(s) 116, 740, 778, 814
MaeI CTAG 3 cut(s) 462, 828, 864
MaeII ACGT 1 cut(s) 894
MaeIII GTNAC 1 cut(s) 816
MalI GATC 5 cut(s) 96, 147, 714, 855, 942
MbiI CCGCTC 1 cut(s) 661
MboI GATC 5 cut(s) 94, 145, 712, 853, 940
MboII GAAGA 4 cut(s) 140, 326, 749, 863
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 3 cut(s) 82, 120, 484
MluCI AATT 7 cut(s) 38, 188, 220, 537, 563, 838, 955
MlyI GAGTC 2 cut(s) 289, 480
MmeI TCCRAC 3 cut(s) 600, 877, 881
MnlI CCTC 4 cut(s) 38, 730, 733, 926
MroXI GAANNNNTTC 2 cut(s) 192, 537
MseI TTAA 5 cut(s) 29, 381, 452, 794, 834
MslI CAYNNNNRTG 1 cut(s) 950
MspCI CTTAAG 1 cut(s) 451
MspI CCGG 3 cut(s) 10, 299, 907
MspR9I CCNGG 2 cut(s) 251, 485
MvaI CCWGG 2 cut(s) 251, 485
MwoI GCNNNNNNNGC 6 cut(s) 19, 124, 707, 788, 883, 923
NcoI CCATGG 1 cut(s) 693
NdeII GATC 5 cut(s) 94, 145, 712, 853, 940
NheI GCTAGC 1 cut(s) 827
NlaIII CATG 2 cut(s) 697, 949
NlaIV GGNNCC 4 cut(s) 14, 207, 481, 691
PciSI GCTCTTC 1 cut(s) 339
PdmI GAANNNNTTC 2 cut(s) 192, 537
PfeI GAWTC 2 cut(s) 613, 910
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 4 cut(s) 241, 703, 876, 888
PleI GAGTC 2 cut(s) 289, 479
PpsI GAGTC 2 cut(s) 289, 479
Psp124BI GAGCTC 1 cut(s) 82
Psp1406I AACGTT 1 cut(s) 894
Psp6I CCWGG 2 cut(s) 249, 483
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 249, 483
PspN4I GGNNCC 4 cut(s) 14, 207, 481, 691
PspPI GGNCC 3 cut(s) 12, 47, 690
PstI CTGCAG 2 cut(s) 891, 924
PsuI RGATCY 1 cut(s) 853
RsaI GTAC 3 cut(s) 232, 449, 649
RsaNI GTAC 3 cut(s) 231, 448, 648
RseI CAYNNNNRTG 1 cut(s) 950
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 5 cut(s) 29, 381, 452, 794, 834
SatI GCNGC 4 cut(s) 240, 702, 875, 887
Sau3AI GATC 5 cut(s) 94, 145, 712, 853, 940
Sau96I GGNCC 3 cut(s) 12, 47, 690
ScaI AGTACT 1 cut(s) 449
SchI GAGTC 2 cut(s) 289, 480
ScrFI CCNGG 2 cut(s) 251, 485
SduI GDGCHC 3 cut(s) 82, 120, 484
SfaNI GCATC 4 cut(s) 116, 740, 778, 814
SfcI CTRYAG 4 cut(s) 651, 672, 887, 920
SinI GGWCC 2 cut(s) 47, 690
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 2 cut(s) 81, 451
SmoI CTYRAG 2 cut(s) 81, 451
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 7 cut(s) 38, 188, 220, 537, 563, 838, 955
SsiI CCGC 2 cut(s) 111, 661
SspMI CTAG 3 cut(s) 462, 828, 864
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 2 cut(s) 249, 483
StyI CCWWGG 2 cut(s) 693, 776
TaaI ACNGT 2 cut(s) 546, 589
TaiI ACGT 1 cut(s) 897
TaqI TCGA 4 cut(s) 151, 313, 679, 760
TasI AATT 7 cut(s) 38, 188, 220, 537, 563, 838, 955
TatI WGTACW 2 cut(s) 447, 647
TfiI GAWTC 2 cut(s) 613, 910
Tru1I TTAA 5 cut(s) 29, 381, 452, 794, 834
Tru9I TTAA 5 cut(s) 29, 381, 452, 794, 834
TscAI CASTG 4 cut(s) 347, 549, 711, 924
TseI GCWGC 4 cut(s) 239, 701, 874, 886
TspDTI ATGAA 1 cut(s) 15
TspRI CASTG 4 cut(s) 347, 549, 711, 924
Vha464I CTTAAG 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 47, 690
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 220
XmnI GAANNNNTTC 2 cut(s) 192, 537
XspI CTAG 3 cut(s) 462, 828, 864
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.