Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Reverse (-)

20929950 .. 20934522

Gene Structure 4573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18760.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGCGCACCGTTTGGAGGCCCGATCGGTTCTAACCCCAGTGCTGCCGGAGCCCAGCCGAACAGGGACCCGAACATGGCGTCGGCGGAGCAGTTGGTGCTCGAACTCAGCAACCCCCAACTTCGTGAAAACGCGCTCCTTGAACTCTCCAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTGTTGTGGAATTCTTTCGGTACTATAGCTGCTCTGTTACAGGAGATAGTTTCAATATACCCTGTTCTGTCCCCACCAAATTTAACTCCTGCCCAATCAAATCGAGTTTGCAATGCTCTAGCGCTTCTTCAGTGTGTGGCATCACACCCAGACACAAGGATGTTGTTCCTTAATGCTCATATACCTTTATATTTGTACCCTTTCCTTAATACAACAAGCAAGTCAAGGCCTTTCGAGTACTTGAGACTCACTAGCTTAGGAGTCATTGGTGCCTTAGTGAAGGTCGATGATACAGAAGTGATTAGTTTTCTTCTATCAACTGAAATAATCCCGTTGTGCTTGCGAACTATGGAAATGGGTAGTGAACTGTCAAAAACAGTGGCGACATTTATTGTTCAAAAGATTTTGTTGGATGACGTAGGCTTGGATTATATCTGTACTACAGCTGAGCGTTTTTTCGCAGTGGGTCGAGTCTTGGGAACCATGGTTGCATCACTTGCTGACCAGCCTTCATCTCGCTTGCTAAAACATATTATCCGATGTTATCTACGACTGTCAGAAAACCCAAGGGCTTGTGATGCTTTGAGGAGCTGTCTTCCCGATATGTTGAGAGATGCTACCTTCAGTGTTTCCCTCCGTGAAGATCCAACGACAAGGAGATGGCTGCAGCAGTTGCTTCACAACGTTGGTGTTAGTCGGGTTCCTGCGCTTCAGGGTGGAGGAGGATTTGATCAGATGATGATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

311

Amino Acids

34.15

Weight (kDa)

6.44

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccII	CGCG	1 cut(s)	134
AciI	CCGC	1 cut(s)	86
AclI	AACGTT	1 cut(s)	867
AclWI	GGATC	1 cut(s)	821
AcsI	RAATTY	2 cut(s)	193, 262
AcuI	CTGAAG	3 cut(s)	296, 790, 878
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	4 cut(s)	205, 380, 422, 622
AfeI	AGCGCT	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	17, 76
AgsI	TTSAA	4 cut(s)	143, 170, 237, 581
AluBI	AGCT	4 cut(s)	212, 438, 629, 774
AluI	AGCT	4 cut(s)	212, 438, 629, 774
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	821
Aor51HI	AGCGCT	1 cut(s)	306
AoxI	GGCC	2 cut(s)	19, 410
ApeKI	GCWGC	4 cut(s)	44, 212, 847, 850
ApoI	RAATTY	2 cut(s)	193, 262
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
Asp700I	GAANNNNTTC	2 cut(s)	165, 197
AspLEI	GCGC	4 cut(s)	8, 136, 307, 892
AspS9I	GGNCC	2 cut(s)	20, 67
AvaII	GGWCC	1 cut(s)	67
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	31, 199, 834, 862
BccI	CCATC	1 cut(s)	837
BclI	TGATCA	1 cut(s)	913
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	2 cut(s)	302, 435
BfmI	CTRYAG	3 cut(s)	207, 624, 848
BfoI	RGCGCY	1 cut(s)	308
BisI	GCNGC	4 cut(s)	45, 213, 848, 851
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	4 cut(s)	46, 214, 849, 852
BmcAI	AGTACT	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	20, 67
BmiI	GGNNCC	7 cut(s)	52, 68, 69, 180, 454, 664, 885
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	4 cut(s)	332, 683, 751, 787
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	439
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	445
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	666, 749
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 76
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	666, 749
BseGI	GGATG	2 cut(s)	348, 601
BseLI	CCNNNNNNNGG	2 cut(s)	17, 76
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	121, 621
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	784, 918
BseXI	GCAGC	4 cut(s)	31, 199, 834, 862
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	21, 412
BshNI	GGYRCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	80, 238
BslI	CCNNNNNNNGG	2 cut(s)	17, 76
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	2 cut(s)	80, 238
BsnI	GGCC	2 cut(s)	21, 412
Bsp1286I	GDGCHC	2 cut(s)	55, 102
Bsp143I	GATC	3 cut(s)	24, 826, 913
Bsp1720I	GCTNAGC	1 cut(s)	630
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	21, 412
BspCNI	CTCAG	2 cut(s)	120, 622
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	7 cut(s)	52, 68, 69, 180, 454, 664, 885
BspMAI	CTGCAG	1 cut(s)	852
BspPI	GGATC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	666, 749
BssMI	GATC	3 cut(s)	24, 826, 913
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	2 cut(s)	666, 749
Bst4CI	ACNGT	4 cut(s)	12, 552, 562, 738
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	80
BstAPI	GCANNNNNTGC	3 cut(s)	97, 680, 856
BstC8I	GCNNGC	2 cut(s)	524, 704
BstDEI	CTNAG	4 cut(s)	107, 439, 457, 630
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	348, 601
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	4 cut(s)	8, 136, 307, 892
BstKTI	GATC	3 cut(s)	27, 829, 916
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	24, 826, 913
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 97, 680, 761, 856
BstSFI	CTRYAG	3 cut(s)	207, 624, 848
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	31, 199, 834, 862
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	826
BsuRI	GGCC	2 cut(s)	21, 412
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	348, 601
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	5 cut(s)	46, 320, 567, 651, 814
Cac8I	GCNNGC	2 cut(s)	524, 704
CfoI	GCGC	4 cut(s)	8, 136, 307, 892
Cfr13I	GGNCC	2 cut(s)	20, 67
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	204, 379, 421, 621
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviAII	CATG	2 cut(s)	76, 667
CviQI	GTAC	4 cut(s)	204, 379, 421, 621
DdeI	CTNAG	4 cut(s)	107, 439, 457, 630
DpnI	GATC	3 cut(s)	26, 828, 915
DpnII	GATC	3 cut(s)	24, 826, 913
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	666, 749
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	67
Eco47III	AGCGCT	1 cut(s)	306
Eco57I	CTGAAG	3 cut(s)	296, 790, 878
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	666, 749
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	666, 749
FaeI	CATG	2 cut(s)	79, 670
FaqI	GGGAC	2 cut(s)	80, 238
FatI	CATG	2 cut(s)	75, 666
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	4 cut(s)	45, 213, 848, 851
FokI	GGATG	2 cut(s)	355, 608
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	4 cut(s)	45, 213, 848, 851
FspBI	CTAG	2 cut(s)	302, 435
GlaI	GCGC	4 cut(s)	7, 135, 306, 891
GluI	GCNGC	4 cut(s)	45, 213, 848, 851
GsaI	CCCAGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	21, 412
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	4 cut(s)	8, 136, 307, 892
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	79, 670
Hin6I	GCGC	4 cut(s)	6, 134, 305, 890
HinP1I	GCGC	4 cut(s)	6, 134, 305, 890
HinfI	GANTC	3 cut(s)	429, 444, 654
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	3 cut(s)	722, 742, 918
Hpy188III	TCNNGA	3 cut(s)	125, 170, 782
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	457, 702, 814
HpyCH4III	ACNGT	4 cut(s)	12, 552, 562, 738
HpyCH4IV	ACGT	2 cut(s)	600, 867
HpyCH4V	TGCA	3 cut(s)	294, 674, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 97, 680, 761, 856
HpyF3I	CTNAG	4 cut(s)	107, 439, 457, 630
HpySE526I	ACGT	2 cut(s)	600, 867
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	79, 670
HspAI	GCGC	4 cut(s)	6, 134, 305, 890
KflI	GGGWCCC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	3 cut(s)	24, 826, 913
LmnI	GCTCC	5 cut(s)	50, 88, 141, 184, 771
Lsp1109I	GCAGC	4 cut(s)	31, 199, 834, 862
LweI	GCATC	4 cut(s)	332, 683, 751, 787
MaeI	CTAG	2 cut(s)	302, 435
MaeII	ACGT	2 cut(s)	600, 867
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	26, 828, 915
MboI	GATC	3 cut(s)	24, 826, 913
MboII	GAAGA	5 cut(s)	166, 302, 485, 770, 836
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	55, 102
MluCI	AATT	3 cut(s)	161, 193, 262
MlyI	GAGTC	3 cut(s)	423, 453, 663
MmeI	TCCRAC	2 cut(s)	573, 854
MnlI	CCTC	5 cut(s)	11, 762, 827, 896, 899
MroXI	GAANNNNTTC	2 cut(s)	165, 197
MseI	TTAA	3 cut(s)	266, 354, 390
MslI	CAYNNNNRTG	2 cut(s)	187, 341
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	5 cut(s)	50, 97, 680, 761, 856
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	3 cut(s)	24, 826, 913
NlaIII	CATG	2 cut(s)	79, 670
NlaIV	GGNNCC	7 cut(s)	52, 68, 69, 180, 454, 664, 885
PceI	AGGCCT	1 cut(s)	412
PdmI	GAANNNNTTC	2 cut(s)	165, 197
PkrI	GCNGC	4 cut(s)	46, 214, 849, 852
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	3 cut(s)	423, 452, 662
PpsI	GAGTC	3 cut(s)	423, 452, 662
PpuMI	RGGWCCY	1 cut(s)	67
Psp1406I	AACGTT	1 cut(s)	867
Psp5II	RGGWCCY	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	7 cut(s)	52, 68, 69, 180, 454, 664, 885
PspPI	GGNCC	2 cut(s)	20, 67
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	852
PsuI	RGATCY	1 cut(s)	826
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	4 cut(s)	205, 380, 422, 622
RsaNI	GTAC	4 cut(s)	204, 379, 421, 621
RseI	CAYNNNNRTG	2 cut(s)	187, 341
SaqAI	TTAA	3 cut(s)	266, 354, 390
SatI	GCNGC	4 cut(s)	45, 213, 848, 851
Sau3AI	GATC	3 cut(s)	24, 826, 913
Sau96I	GGNCC	2 cut(s)	20, 67
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	3 cut(s)	423, 453, 663
SduI	GDGCHC	2 cut(s)	55, 102
SetI	ASST	9 cut(s)	214, 370, 440, 468, 603, 631, 776, 806, 870
SfaNI	GCATC	4 cut(s)	332, 683, 751, 787
SfcI	CTRYAG	3 cut(s)	207, 624, 848
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	187, 341
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	3 cut(s)	161, 193, 262
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	302, 435
StuI	AGGCCT	1 cut(s)	412
StyI	CCWWGG	2 cut(s)	666, 749
TaaI	ACNGT	4 cut(s)	12, 552, 562, 738
TaiI	ACGT	2 cut(s)	603, 870
TaqI	TCGA	5 cut(s)	102, 286, 417, 468, 652
TasI	AATT	3 cut(s)	161, 193, 262
TatI	WGTACW	2 cut(s)	420, 620
Tru1I	TTAA	3 cut(s)	266, 354, 390
Tru9I	TTAA	3 cut(s)	266, 354, 390
TscAI	CASTG	5 cut(s)	46, 320, 567, 651, 814
TseI	GCWGC	4 cut(s)	44, 212, 847, 850
TspDTI	ATGAA	1 cut(s)	684
TspGWI	ACGGA	1 cut(s)	809
TspRI	CASTG	5 cut(s)	46, 320, 567, 651, 814
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	2 cut(s)	193, 262
XmnI	GAANNNNTTC	2 cut(s)	165, 197
XspI	CTAG	2 cut(s)	302, 435
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.