Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003117

Physical Location & Seq

Genomic Coordinates Reverse (-)

118669 .. 122506

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAAACCGGCCCCAGTCACTTTCATTAAATGTTCCATTCGGAGGTCCAAGCATTTCAGCACCAAGCATTGCTGGAGCTCAAGCAAACAAAGATCGATCTCTCACTGGTAAAATGGCATCAGCAGAGCGCTTGGTGCTTGACTTGAGTAATCCTGATCTTCGAGAAAACGCGCTTCTTGAACTTTCAAAGAACAAGGAATTATTTCAAGATTTGGCTCCTTTCGTGTGGAATTCTTTTGGTACTATTGCTGCACTCATCCAGGAGATAGTTTCAATATACCCTGTTCTATCACCACCAAATCTGACTCCGGCACAATCCAATCGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGCGTAGCTTCCCACCCAGATACAAGGATGTTGTTCCTCAATGCTCATATACCTTTATATCTGTATCCTTTTCTCAATACATCAAGCAAGGCAAGACCATTTGAGTACTTAAGGCTTACGAGTTTAGGAGTCATTGGTGCCCTGGTGAAGGTTGATGATACTGAAGTTATTAGTTTCCTTCTGTCAACAGAAATAATTCCACTGTGCCTTCGCACTATGGAATTGGGCAGTGAACTCTCAAAAACAGTAGCCACATTTATAGTTCAGAAGATTTTGTTGGATGATATGGGCTTGGACTATATTTGTACTACAGCAGAACGGTTTTTTGCCGTAGGTCGAGTTTTGGGGACCATGGTTACAGCACTGGATGATCAACCCTCATCACGCCTTTTGAAACACATCATTCGTTGCTATCTTCGATTGTCAGATAATCCAAGGGCTTGTGATGCTTTAAGAAGTTGCCTTCCAGATGTGTTACGAGAGGCTAGCTTTAACAATTTCCTTTGTGAAGATCGATCATCTACTAGGAGGTGGCTGCAACAACTGCTGCAAAATGTTGGAGTGAGCCGGATTCCTGCACTGCAGGGTGGGGGAGGATTTGATCACGTGATGGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Rcd1

Protein Analysis

325

Amino Acids

35.68

Weight (kDa)

6.89

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20800
fragaria_vesca	FvH4_3g23230 FvH4_4g37120 FvH4_4g37120
malus_domestica	MD03G1196300.v1.1 MD11G1212600.v1.1 MD13G1003400.v1.1 MD16G1004000.v1.1
prunus_persica	Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.1G349000_v2.0.a1 Prupe.4G219100_v2.0.a1
pyrus_communis	pycom03g14840 pycom11g18760 pycom13g00290 pycom16g00200
rosa_chinensis	RchiOBHm_Chr4g0446921 RchiOBHm_Chr5g0040921
rosa_laevigata	RLG00000005621 RLG00000034013
rosa_multiflora	Rmu_sc0001753.1_g000010 Rmu_sc0002848.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039770 Rroxscaffold_5G00387250
rosa_rugosa	Rorug04G0376000 Rorug04G0376100 Rorug04G0376200 Rorug04G0376300 Rorug04G0376300 Rorug05G0188600
rosa_samantha	Rh4AG437200 Rh4BG446400 Rh4CG463700 Rh4DG445100 Rh5CG311300
rosa_wichuraiana	Rw4G037410 Rw5G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AccII	CGCG	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	2 cut(s)	335, 537
AcvI	CACGTG	1 cut(s)	961
AfaI	GTAC	3 cut(s)	244, 461, 661
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	44, 502
AflII	CTTAAG	1 cut(s)	463
AgsI	TTSAA	5 cut(s)	182, 189, 209, 276, 748
AjnI	CCWGG	2 cut(s)	261, 495
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	3 cut(s)	80, 362, 843
AluI	AGCT	3 cut(s)	80, 362, 843
Alw21I	GWGCWC	1 cut(s)	82
Aor51HI	AGCGCT	1 cut(s)	131
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	251, 889, 901
ApoI	RAATTY	1 cut(s)	232
Asp700I	GAANNNNTTC	2 cut(s)	204, 549
AspLEI	GCGC	2 cut(s)	132, 175
AspS9I	GGNCC	3 cut(s)	12, 47, 702
AsuHPI	GGTGA	2 cut(s)	285, 511
AsuNHI	GCTAGC	1 cut(s)	839
AvaII	GGWCC	2 cut(s)	47, 702
BaeGI	GKGCMC	1 cut(s)	496
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	82
BbrPI	CACGTG	1 cut(s)	961
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	238, 876, 888
BccI	CCATC	1 cut(s)	958
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	2 cut(s)	263, 497
BciVI	GTATCC	1 cut(s)	429
BclI	TGATCA	2 cut(s)	724, 955
BfaI	CTAG	2 cut(s)	840, 879
BfmI	CTRYAG	2 cut(s)	663, 935
BfoI	RGCGCY	1 cut(s)	133
BfrI	CTTAAG	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	429
BisI	GCNGC	3 cut(s)	252, 890, 902
BlsI	GCNGC	3 cut(s)	253, 891, 903
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	2 cut(s)	263, 497
Bme18I	GGWCC	2 cut(s)	47, 702
BmgT120I	GGNCC	3 cut(s)	12, 47, 702
BmiI	GGNNCC	4 cut(s)	14, 219, 493, 703
BmrFI	CCNGG	2 cut(s)	263, 497
BmrI	ACTGGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	128, 790
BmtI	GCTAGC	1 cut(s)	843
BmuI	ACTGGG	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	66, 166
Bsa29I	ATCGAT	2 cut(s)	97, 868
BsaAI	YACGTR	1 cut(s)	961
BsaJI	CCNNGG	3 cut(s)	495, 705, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 502
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	3 cut(s)	16, 112, 723
Bse3DI	GCAATG	2 cut(s)	69, 340
BseBI	CCWGG	2 cut(s)	263, 497
BseCI	ATCGAT	2 cut(s)	97, 868
BseDI	CCNNGG	3 cut(s)	495, 705, 788
BseGI	GGATG	4 cut(s)	258, 387, 640, 727
BseLI	CCNNNNNNNGG	2 cut(s)	44, 502
BseMI	GCAATG	2 cut(s)	69, 340
BseNI	ACTGG	3 cut(s)	16, 112, 723
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	3 cut(s)	238, 876, 888
BsgI	GTGCAG	2 cut(s)	237, 915
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	491
BshVI	ATCGAT	2 cut(s)	97, 868
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	10, 311, 922
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	2 cut(s)	44, 502
BsmFI	GGGAC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	82, 496
Bsp143I	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
Bsp19I	CCATGG	1 cut(s)	705
BspANI	GGCC	1 cut(s)	13
BspDI	ATCGAT	2 cut(s)	97, 868
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	4 cut(s)	14, 219, 493, 703
BspMAI	CTGCAG	1 cut(s)	939
BspOI	GCTAGC	1 cut(s)	843
BspQI	GCTCTTC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	463
BsrDI	GCAATG	2 cut(s)	69, 340
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	3 cut(s)	16, 112, 723
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	495, 705, 788
BssMI	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
BssT1I	CCWWGG	2 cut(s)	705, 788
Bst2UI	CCWGG	2 cut(s)	263, 497
Bst4CI	ACNGT	3 cut(s)	558, 601, 675
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	898
BstBAI	YACGTR	1 cut(s)	961
BstC8I	GCNNGC	1 cut(s)	841
BstDSI	CCRYGG	1 cut(s)	705
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	4 cut(s)	258, 387, 640, 727
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	132, 175
BstKTI	GATC	7 cut(s)	97, 101, 160, 727, 868, 872, 958
BstMBI	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 800, 898
BstNI	CCWGG	2 cut(s)	263, 497
BstSCI	CCNGG	2 cut(s)	261, 495
BstSFI	CTRYAG	2 cut(s)	663, 935
BstSLI	GKGCMC	1 cut(s)	496
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	238, 876, 888
Bsu15I	ATCGAT	2 cut(s)	97, 868
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	13
BsuTUI	ATCGAT	2 cut(s)	97, 868
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	4 cut(s)	258, 387, 640, 727
BtsI	GCAGTG	2 cut(s)	589, 932
BtsIMutI	CAGTG	6 cut(s)	105, 359, 554, 589, 716, 932
Cac8I	GCNNGC	1 cut(s)	841
CfoI	GCGC	2 cut(s)	132, 175
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	12, 47, 702
ClaI	ATCGAT	2 cut(s)	97, 868
Csp6I	GTAC	3 cut(s)	243, 460, 660
CviAII	CATG	1 cut(s)	706
CviQI	GTAC	3 cut(s)	243, 460, 660
DpnI	GATC	7 cut(s)	96, 100, 159, 726, 867, 871, 957
DpnII	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	705, 788
Eco24I	GRGCYC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	47, 702
Eco47III	AGCGCT	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	335, 537
Eco72I	CACGTG	1 cut(s)	961
EcoICRI	GAGCTC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	261, 495
EcoT14I	CCWWGG	2 cut(s)	705, 788
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	705, 788
FaeI	CATG	1 cut(s)	709
FaiI	YATR	9 cut(s)	280, 402, 404, 412, 572, 614, 641, 654, 707
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	1 cut(s)	705
FbaI	TGATCA	2 cut(s)	724, 955
Fnu4HI	GCNGC	3 cut(s)	252, 890, 902
FokI	GGATG	4 cut(s)	245, 394, 647, 734
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	252, 890, 902
FspBI	CTAG	2 cut(s)	840, 879
GlaI	GCGC	2 cut(s)	131, 174
GluI	GCNGC	3 cut(s)	252, 890, 902
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	3 cut(s)	10, 311, 922
HhaI	GCGC	2 cut(s)	132, 175
Hin1II	CATG	1 cut(s)	709
Hin6I	GCGC	2 cut(s)	130, 173
HinP1I	GCGC	2 cut(s)	130, 173
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	3 cut(s)	307, 483, 925
HpaII	CCGG	3 cut(s)	10, 311, 922
HphI	GGTGA	2 cut(s)	285, 511
Hpy166II	GTNNAC	2 cut(s)	540, 587
Hpy188I	TCNGA	4 cut(s)	44, 306, 621, 781
Hpy188III	TCNNGA	5 cut(s)	155, 164, 179, 209, 821
Hpy8I	GTNNAC	2 cut(s)	540, 587
HpyAV	CCTTC	4 cut(s)	496, 542, 572, 827
HpyCH4III	ACNGT	3 cut(s)	558, 601, 675
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	6 cut(s)	254, 333, 892, 904, 932, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 800, 898
HpySE526I	ACGT	1 cut(s)	960
Hsp92II	CATG	1 cut(s)	709
HspAI	GCGC	2 cut(s)	130, 173
Ksp22I	TGATCA	2 cut(s)	724, 955
Kzo9I	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	77, 223
Lsp1109I	GCAGC	3 cut(s)	238, 876, 888
LweI	GCATC	2 cut(s)	128, 790
MaeI	CTAG	2 cut(s)	840, 879
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	3 cut(s)	18, 709, 828
MalI	GATC	7 cut(s)	96, 100, 159, 726, 867, 871, 957
MboI	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
MboII	GAAGA	6 cut(s)	152, 338, 341, 634, 761, 875
MhlI	GDGCHC	2 cut(s)	82, 496
MluCI	AATT	6 cut(s)	200, 232, 549, 575, 850, 970
MlyI	GAGTC	2 cut(s)	301, 492
MmeI	TCCRAC	2 cut(s)	612, 892
MnlI	CCTC	6 cut(s)	38, 401, 742, 829, 876, 941
MroXI	GAANNNNTTC	2 cut(s)	204, 549
MseI	TTAA	4 cut(s)	29, 464, 806, 846
MspCI	CTTAAG	1 cut(s)	463
MspI	CCGG	3 cut(s)	10, 311, 922
MspR9I	CCNGG	2 cut(s)	263, 497
MvaI	CCWGG	2 cut(s)	263, 497
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	136, 800, 898
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
NheI	GCTAGC	1 cut(s)	839
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	4 cut(s)	14, 219, 493, 703
NmuCI	GTSAC	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	351
PdmI	GAANNNNTTC	2 cut(s)	204, 549
PfeI	GAWTC	1 cut(s)	925
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	253, 891, 903
PleI	GAGTC	2 cut(s)	301, 491
PmaCI	CACGTG	1 cut(s)	961
PmlI	CACGTG	1 cut(s)	961
PpsI	GAGTC	2 cut(s)	301, 491
Ppu21I	YACGTR	1 cut(s)	961
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	261, 495
PspCI	CACGTG	1 cut(s)	961
PspGI	CCWGG	2 cut(s)	261, 495
PspN4I	GGNNCC	4 cut(s)	14, 219, 493, 703
PspPI	GGNCC	3 cut(s)	12, 47, 702
PstI	CTGCAG	1 cut(s)	939
RsaI	GTAC	3 cut(s)	244, 461, 661
RsaNI	GTAC	3 cut(s)	243, 460, 660
SacI	GAGCTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	29, 464, 806, 846
SatI	GCNGC	3 cut(s)	252, 890, 902
Sau3AI	GATC	7 cut(s)	94, 98, 157, 724, 865, 869, 955
Sau96I	GGNCC	3 cut(s)	12, 47, 702
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	2 cut(s)	301, 492
ScrFI	CCNGG	2 cut(s)	263, 497
SduI	GDGCHC	2 cut(s)	82, 496
SetI	ASST	9 cut(s)	49, 82, 364, 409, 507, 691, 845, 887, 963
SfaNI	GCATC	2 cut(s)	128, 790
SfcI	CTRYAG	2 cut(s)	663, 935
SinI	GGWCC	2 cut(s)	47, 702
SmlI	CTYRAG	3 cut(s)	81, 145, 463
SmoI	CTYRAG	3 cut(s)	81, 145, 463
Sse9I	AATT	6 cut(s)	200, 232, 549, 575, 850, 970
SspMI	CTAG	2 cut(s)	840, 879
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	261, 495
StyI	CCWWGG	2 cut(s)	705, 788
TaaI	ACNGT	3 cut(s)	558, 601, 675
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	6 cut(s)	97, 163, 325, 691, 772, 868
TasI	AATT	6 cut(s)	200, 232, 549, 575, 850, 970
TatI	WGTACW	2 cut(s)	459, 659
TfiI	GAWTC	1 cut(s)	925
Tru1I	TTAA	4 cut(s)	29, 464, 806, 846
Tru9I	TTAA	4 cut(s)	29, 464, 806, 846
TscAI	CASTG	6 cut(s)	112, 359, 561, 589, 723, 939
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	3 cut(s)	251, 889, 901
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	6 cut(s)	112, 359, 561, 589, 723, 939
Vha464I	CTTAAG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	47, 702
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	232
XmnI	GAANNNNTTC	2 cut(s)	204, 549
XspI	CTAG	2 cut(s)	840, 879
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.