MD11G1212600.v1.1

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003117
Physical Location & Seq
Reverse (-)
31039700 .. 31044117
4418 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1212600.v1.1.491

Sequence Viewer

Length: 951 bp
ATGAGCGCACCGTTTGGAGGCCCGATCGGTTCTAACCCCAGTGCTGCCGGAGCCCAGCCGAACAGGGACCCGAACATGGCGTCGGCGGAGCAGTTGGTGCTCGAACTCAGCAACCCCCAACTTCGTGAAAACGCGCTCCTTGAACTCTCCAAGTTATTGGTTATGGAGAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTGTTGTGGAATTCTTTTGGTACTATAGCTGCTCTGTTACAGGAGATAGTTTCAATATACCCTGTTCTGTCCCCACCAAATTTAACTCCTGCCCAATCAAATCGAGTTTGCAATGCTCTAGCGCTTCTTCAGTGTGTGGCATCACACCCAGACACAAGGATGTTGTTCCTTAACGCTCATATACCTTTATATTTGTACCCTTTCCTTAATACAACAAGCAAGTCAAGGCCTTTCGAGTACTTGAGACTCACTAGCTTAGGAGTCATTGGTGCCTTAGTGAAGGTCGACGATACAGAAGTGATTAGTTTTCTTCTATCAACTGAAATAATCCCGTTGTGCCTGCGAACTATGGAAATGGGTAGTGAACTGTCAAAAACAGTGGCGACATTTATTGTTCAAAAGATTTTGTTGGATGACGTAGGCTTGGATTATATCTGTACTACAGCTGAGCGTTTTTTCGCAGTGGGTCGAGTCTTGGGAACCATGGTTGCATCACTTGCTGACCAGCCTTCATCTCGCTTGCTAAAACATATTATCCGATGTTATCTACGATTGTCAGATAACCCAAGGGCTTGTGATGCTTTGAGGAGCTGTCTTCCCGATATGTTGAGAGATGCTACCTTCAGTGTTTCCCTCCGTGAAGATCCAACGACAAGGAGATGGCTGCAGCAGTTGCTTCACAACGTTGGTGTTAGTCGGGTTCCTGCGCTTCAGGGTGGAGGAGGATTTGATCAGATGATGATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

317

Amino Acids

34.85

Weight (kDa)

6.44

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 32 - 296 1.2e-124 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 470
AccI GTMKAC 1 cut(s) 486
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 86
AclI AACGTT 1 cut(s) 885
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 2 cut(s) 211, 280
AcuI CTGAAG 3 cut(s) 314, 808, 896
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 4 cut(s) 223, 398, 440, 640
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 17, 76
AgsI TTSAA 4 cut(s) 143, 188, 255, 599
AluBI AGCT 4 cut(s) 230, 456, 647, 792
AluI AGCT 4 cut(s) 230, 456, 647, 792
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 1 cut(s) 839
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 2 cut(s) 19, 428
ApeKI GCWGC 4 cut(s) 44, 230, 865, 868
ApoI RAATTY 2 cut(s) 211, 280
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 4 cut(s) 8, 136, 325, 910
AspS9I GGNCC 2 cut(s) 20, 67
AvaII GGWCC 1 cut(s) 67
BaeI ACNNNNGTAYC 2 cut(s) 483, 516
BanI GGYRCC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 31, 217, 852, 880
BccI CCATC 1 cut(s) 855
BclI TGATCA 1 cut(s) 931
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 2 cut(s) 320, 453
BfmI CTRYAG 3 cut(s) 225, 642, 866
BfoI RGCGCY 1 cut(s) 326
BisI GCNGC 4 cut(s) 45, 231, 866, 869
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 4 cut(s) 46, 232, 867, 870
BmcAI AGTACT 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 20, 67
BmiI GGNNCC 7 cut(s) 52, 68, 69, 198, 472, 682, 903
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 4 cut(s) 350, 701, 769, 805
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 457
Bpu1102I GCTNAGC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 463
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 684, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 76
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 684, 767
BseGI GGATG 2 cut(s) 366, 619
BseLI CCNNNNNNNGG 2 cut(s) 17, 76
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 121, 639
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 802, 936
BseXI GCAGC 4 cut(s) 31, 217, 852, 880
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 21, 430
BshNI GGYRCC 1 cut(s) 470
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 2 cut(s) 80, 256
BslI CCNNNNNNNGG 2 cut(s) 17, 76
BsmAI GTCTC 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 80, 256
BsnI GGCC 2 cut(s) 21, 430
Bsp1286I GDGCHC 2 cut(s) 55, 102
Bsp143I GATC 3 cut(s) 24, 844, 931
Bsp1720I GCTNAGC 1 cut(s) 648
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 1 cut(s) 86
BspANI GGCC 2 cut(s) 21, 430
BspCNI CTCAG 2 cut(s) 120, 640
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 7 cut(s) 52, 68, 69, 198, 472, 682, 903
BspMAI CTGCAG 1 cut(s) 870
BspPI GGATC 1 cut(s) 839
BspT107I GGYRCC 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 684, 767
BssMI GATC 3 cut(s) 24, 844, 931
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 2 cut(s) 684, 767
Bst4CI ACNGT 3 cut(s) 12, 570, 580
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 80
BstAPI GCANNNNNTGC 3 cut(s) 97, 698, 874
BstC8I GCNNGC 2 cut(s) 542, 722
BstDEI CTNAG 4 cut(s) 107, 457, 475, 648
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 2 cut(s) 366, 619
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 4 cut(s) 8, 136, 325, 910
BstKTI GATC 3 cut(s) 27, 847, 934
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 3 cut(s) 24, 844, 931
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 5 cut(s) 50, 97, 698, 779, 874
BstSFI CTRYAG 3 cut(s) 225, 642, 866
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 4 cut(s) 31, 217, 852, 880
BstV2I GAAGAC 1 cut(s) 788
BstX2I RGATCY 1 cut(s) 844
BstXI CCANNNNNNTGG 2 cut(s) 157, 207
BstYI RGATCY 1 cut(s) 844
BsuRI GGCC 2 cut(s) 21, 430
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 2 cut(s) 366, 619
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 5 cut(s) 46, 338, 585, 669, 832
Cac8I GCNNGC 2 cut(s) 542, 722
CfoI GCGC 4 cut(s) 8, 136, 325, 910
Cfr13I GGNCC 2 cut(s) 20, 67
CseI GACGC 1 cut(s) 69
Csp6I GTAC 4 cut(s) 222, 397, 439, 639
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 2 cut(s) 76, 685
CviQI GTAC 4 cut(s) 222, 397, 439, 639
DdeI CTNAG 4 cut(s) 107, 457, 475, 648
DpnI GATC 3 cut(s) 26, 846, 933
DpnII GATC 3 cut(s) 24, 844, 931
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 684, 767
Eco147I AGGCCT 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 67
Eco47III AGCGCT 1 cut(s) 324
Eco57I CTGAAG 3 cut(s) 314, 808, 896
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 684, 767
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 684, 767
FaeI CATG 2 cut(s) 79, 688
FaqI GGGAC 2 cut(s) 80, 256
FatI CATG 2 cut(s) 75, 684
FbaI TGATCA 1 cut(s) 931
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 4 cut(s) 45, 231, 866, 869
FokI GGATG 2 cut(s) 373, 626
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 4 cut(s) 45, 231, 866, 869
FspBI CTAG 2 cut(s) 320, 453
GlaI GCGC 4 cut(s) 7, 135, 324, 909
GluI GCNGC 4 cut(s) 45, 231, 866, 869
GsaI CCCAGC 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 2 cut(s) 21, 430
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 69
HhaI GCGC 4 cut(s) 8, 136, 325, 910
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 79, 688
Hin6I GCGC 4 cut(s) 6, 134, 323, 908
HinP1I GCGC 4 cut(s) 6, 134, 323, 908
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 447, 462, 672
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 487, 566
Hpy188I TCNGA 3 cut(s) 740, 760, 936
Hpy188III TCNNGA 3 cut(s) 125, 188, 800
Hpy8I GTNNAC 2 cut(s) 487, 566
Hpy99I CGWCG 2 cut(s) 85, 491
HpyAV CCTTC 3 cut(s) 475, 720, 832
HpyCH4III ACNGT 3 cut(s) 12, 570, 580
HpyCH4IV ACGT 2 cut(s) 618, 885
HpyCH4V TGCA 3 cut(s) 312, 692, 868
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 97, 698, 779, 874
HpyF3I CTNAG 4 cut(s) 107, 457, 475, 648
HpySE526I ACGT 2 cut(s) 618, 885
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 79, 688
HspAI GCGC 4 cut(s) 6, 134, 323, 908
KflI GGGWCCC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 3 cut(s) 24, 844, 931
LmnI GCTCC 5 cut(s) 50, 88, 141, 202, 789
Lsp1109I GCAGC 4 cut(s) 31, 217, 852, 880
LweI GCATC 4 cut(s) 350, 701, 769, 805
MaeI CTAG 2 cut(s) 320, 453
MaeII ACGT 2 cut(s) 618, 885
MaeIII GTNAC 1 cut(s) 237
MalI GATC 3 cut(s) 26, 846, 933
MboI GATC 3 cut(s) 24, 844, 931
MboII GAAGA 6 cut(s) 181, 184, 320, 503, 788, 854
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 2 cut(s) 55, 102
MluCI AATT 3 cut(s) 179, 211, 280
MlyI GAGTC 3 cut(s) 441, 471, 681
MmeI TCCRAC 2 cut(s) 591, 872
MnlI CCTC 5 cut(s) 11, 780, 845, 914, 917
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 3 cut(s) 284, 372, 408
MslI CAYNNNNRTG 2 cut(s) 205, 359
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 50, 97, 698, 779, 874
NcoI CCATGG 1 cut(s) 684
NdeII GATC 3 cut(s) 24, 844, 931
NlaIII CATG 2 cut(s) 79, 688
NlaIV GGNNCC 7 cut(s) 52, 68, 69, 198, 472, 682, 903
PceI AGGCCT 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 183
PkrI GCNGC 4 cut(s) 46, 232, 867, 870
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 3 cut(s) 441, 470, 680
PpsI GAGTC 3 cut(s) 441, 470, 680
PpuMI RGGWCCY 1 cut(s) 67
Psp1406I AACGTT 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 7 cut(s) 52, 68, 69, 198, 472, 682, 903
PspPI GGNCC 2 cut(s) 20, 67
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 870
PsuI RGATCY 1 cut(s) 844
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 4 cut(s) 223, 398, 440, 640
RsaNI GTAC 4 cut(s) 222, 397, 439, 639
RseI CAYNNNNRTG 2 cut(s) 205, 359
SalI GTCGAC 1 cut(s) 485
SaqAI TTAA 3 cut(s) 284, 372, 408
SatI GCNGC 4 cut(s) 45, 231, 866, 869
Sau3AI GATC 3 cut(s) 24, 844, 931
Sau96I GGNCC 2 cut(s) 20, 67
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 3 cut(s) 441, 471, 681
SduI GDGCHC 2 cut(s) 55, 102
SetI ASST 9 cut(s) 232, 388, 458, 486, 621, 649, 794, 824, 888
SfaNI GCATC 4 cut(s) 350, 701, 769, 805
SfcI CTRYAG 3 cut(s) 225, 642, 866
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 205, 359
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 3 cut(s) 179, 211, 280
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 320, 453
StuI AGGCCT 1 cut(s) 430
StyI CCWWGG 2 cut(s) 684, 767
TaaI ACNGT 3 cut(s) 12, 570, 580
TaiI ACGT 2 cut(s) 621, 888
TaqI TCGA 5 cut(s) 102, 304, 435, 486, 670
TasI AATT 3 cut(s) 179, 211, 280
TatI WGTACW 2 cut(s) 438, 638
Tru1I TTAA 3 cut(s) 284, 372, 408
Tru9I TTAA 3 cut(s) 284, 372, 408
TscAI CASTG 5 cut(s) 46, 338, 585, 669, 832
TseI GCWGC 4 cut(s) 44, 230, 865, 868
TspDTI ATGAA 1 cut(s) 702
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 5 cut(s) 46, 338, 585, 669, 832
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 2 cut(s) 211, 280
XmiI GTMKAC 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 2 cut(s) 320, 453
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.