FvH4_4g37120

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003117
Physical Location & Seq
Forward (+)
33720707 .. 33725890
5184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37120.t2

Sequence Viewer

Length: 960 bp
ATGGCAAATCGGTCCCAGTCTCTTTCAATTAATGTGCCATATGGAGGTCCAAGCGTTTCGGGACCAAGCATCGCTGGAGCTCAAGGAAACAAGGATCGGAAAATGGCATCAGCGGAGCACTTGGTGCTTGACCTAAGTAATCCAGATCTTAGAGAAAATGCGCTTCTTGAACTCTCTAAGAACAAGGAGTTATTTCAAGATTTGGCTCCTTTCGTGTGGAAATCTTTTGGTACTATTGCTGCACTCATACAGGAGATAGTTTCAATATACCCTGTTCTATCTCCACCAAATCTGACTCCGGCACAGTCAAATCGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGCGTGGCTTCCCATCCAGATACAAGGATGCTGTTCCTCAATGCTCATATACCTTTATATTTGTATCCTTTCCTCAATACAACGAGCAAGTCAAGGCCATTTGAGTACTTGAGGCTTACAAGTTTAGGTGTCATCGGTGCCTTAGTCAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTGTCAACAGAAATAATTCCACTGTGCCTTCGTACCATGGAAATGGGGAGTGAACTCTCAAAAACAGTTGCCACGTTTATTGTTCAAAAGATTTTGTTGGATGATATGGGCTTGGATTATATTTGTACAACAGCAGAGCGGTTTTTTGCAGTTGGTCGGGTGTTAGGGAACATGGTTGCAGCACTTGCTGAGCAACCATCATCACGCCTACTGAAACATATAATTCGATGTTATCTTCGATTGTCTGAAAACCCAAGAGCTTGTGATGCTTTAAGAAGTTGTCTTCCGGATATGTTAAGAGATGCTACTTTTAGTACTTTCCTTGTTGAAGATGCAACTACTAGGAAGTGGCTGCAATTGTTGCTCCAAAATGTTGGAGGGAGCCGGCTTCCTTCGCTACAAGCTGGGGGAGGTTTTGATCACATGATGCTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

320

Amino Acids

35.12

Weight (kDa)

6.95

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 41 - 299 7.8e-124 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 661
AccIII TCCGGA 1 cut(s) 808
AciI CCGC 2 cut(s) 113, 661
AclWI GGATC 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 323
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 5 cut(s) 232, 449, 556, 649, 838
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 6 cut(s) 27, 170, 197, 264, 608, 851
AluBI AGCT 3 cut(s) 80, 782, 926
AluI AGCT 3 cut(s) 80, 782, 926
Alw21I GWGCWC 2 cut(s) 82, 120
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 808
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 3 cut(s) 239, 701, 874
AseI ATTAAT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 3 cut(s) 12, 47, 62
AvaII GGWCC 3 cut(s) 12, 47, 62
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 2 cut(s) 82, 120
BbvI GCAGC 3 cut(s) 226, 713, 861
BccI CCATC 2 cut(s) 363, 727
BciVI GTATCC 1 cut(s) 417
BclI TGATCA 1 cut(s) 940
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 864
BfuI GTATCC 1 cut(s) 417
BglII AGATCT 1 cut(s) 145
BisI GCNGC 3 cut(s) 240, 702, 875
BlpI GCTNAGC 1 cut(s) 711
BlsI GCNGC 3 cut(s) 241, 703, 876
BmcAI AGTACT 2 cut(s) 449, 838
Bme18I GGWCC 3 cut(s) 12, 47, 62
BmgT120I GGNCC 3 cut(s) 12, 47, 62
BmiI GGNNCC 5 cut(s) 14, 63, 207, 481, 905
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 7 cut(s) 78, 116, 360, 778, 814, 844, 939
BmuI ACTGGG 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 797
BpmI CTGGAG 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 711
BpuEI CTTGAG 2 cut(s) 66, 472
BsaJI CCNNGG 1 cut(s) 558
BsaWI WCCGGW 1 cut(s) 808
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 906
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 808
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 3 cut(s) 355, 375, 628
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 226, 713, 861
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 2 cut(s) 82, 120
BsiSI CCGG 3 cut(s) 299, 809, 907
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 82, 120
Bsp13I TCCGGA 1 cut(s) 808
Bsp1407I TGTACA 1 cut(s) 647
Bsp143I GATC 3 cut(s) 94, 145, 940
Bsp1720I GCTNAGC 1 cut(s) 711
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 2 cut(s) 113, 661
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 703
BspEI TCCGGA 1 cut(s) 808
BspLI GGNNCC 5 cut(s) 14, 63, 207, 481, 905
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 906
BsrGI TGTACA 1 cut(s) 647
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 906
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 3 cut(s) 94, 145, 940
BssT1I CCWWGG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 306, 546, 589
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 3 cut(s) 124, 707, 883
BstAUI TGTACA 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 908
BstDEI CTNAG 5 cut(s) 134, 149, 177, 484, 711
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 3 cut(s) 355, 375, 628
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 97, 148, 943
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 94, 145, 940
BstMWI GCNNNNNNNGC 5 cut(s) 124, 707, 788, 883, 916
BstV1I GCAGC 3 cut(s) 226, 713, 861
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 2 cut(s) 565, 896
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 417
BsuRI GGCC 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 3 cut(s) 355, 375, 628
BtsIMutI CAGTG 2 cut(s) 347, 542
Cac8I GCNNGC 1 cut(s) 908
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 906
Cfr13I GGNCC 3 cut(s) 12, 47, 62
Csp6I GTAC 5 cut(s) 231, 448, 555, 648, 837
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 3 cut(s) 559, 694, 946
CviQI GTAC 5 cut(s) 231, 448, 555, 648, 837
DdeI CTNAG 5 cut(s) 134, 149, 177, 484, 711
DpnI GATC 3 cut(s) 96, 147, 942
DpnII GATC 3 cut(s) 94, 145, 940
DraIII CACNNNGTG 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 3 cut(s) 12, 47, 62
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 3 cut(s) 562, 697, 949
FaqI GGGAC 1 cut(s) 75
FatI CATG 3 cut(s) 558, 693, 945
FauNDI CATATG 1 cut(s) 40
FbaI TGATCA 1 cut(s) 940
Fnu4HI GCNGC 3 cut(s) 240, 702, 875
FokI GGATG 3 cut(s) 342, 382, 635
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 240, 702, 875
FspBI CTAG 1 cut(s) 864
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 240, 702, 875
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 439
HapII CCGG 3 cut(s) 299, 809, 907
HhaI GCGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 562, 697, 949
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 1 cut(s) 295
HpaII CCGG 3 cut(s) 299, 809, 907
Hpy166II GTNNAC 2 cut(s) 528, 575
Hpy188I TCNGA 3 cut(s) 99, 294, 769
Hpy188III TCNNGA 6 cut(s) 60, 143, 167, 197, 359, 809
Hpy8I GTNNAC 2 cut(s) 528, 575
HpyAV CCTTC 3 cut(s) 530, 560, 924
HpyCH4III ACNGT 3 cut(s) 306, 546, 589
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 6 cut(s) 242, 321, 671, 701, 857, 877
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 707, 788, 883, 916
HpyF3I CTNAG 5 cut(s) 134, 149, 177, 484, 711
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 3 cut(s) 562, 697, 949
HspAI GCGC 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 808
KroI GCCGGC 1 cut(s) 906
KroNI GCCGGC 1 cut(s) 908
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 3 cut(s) 94, 145, 940
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 5 cut(s) 77, 115, 211, 891, 903
Lsp1109I GCAGC 3 cut(s) 226, 713, 861
LweI GCATC 7 cut(s) 78, 116, 360, 778, 814, 844, 939
MaeI CTAG 1 cut(s) 864
MaeII ACGT 1 cut(s) 596
MalI GATC 3 cut(s) 96, 147, 942
MbiI CCGCTC 1 cut(s) 661
MboI GATC 3 cut(s) 94, 145, 940
MboII GAAGA 5 cut(s) 326, 329, 749, 797, 863
MfeI CAATTG 1 cut(s) 878
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 82, 120
MluCI AATT 4 cut(s) 27, 537, 744, 878
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 600, 877
MnlI CCTC 6 cut(s) 38, 389, 425, 447, 893, 926
MroI TCCGGA 1 cut(s) 808
MroNI GCCGGC 1 cut(s) 906
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 3 cut(s) 30, 794, 818
MslI CAYNNNNRTG 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 3 cut(s) 299, 809, 907
MunI CAATTG 1 cut(s) 878
MwoI GCNNNNNNNGC 5 cut(s) 124, 707, 788, 883, 916
NaeI GCCGGC 1 cut(s) 908
NcoI CCATGG 1 cut(s) 558
NdeI CATATG 1 cut(s) 40
NdeII GATC 3 cut(s) 94, 145, 940
NgoMIV GCCGGC 1 cut(s) 906
NlaIII CATG 3 cut(s) 562, 697, 949
NlaIV GGNNCC 5 cut(s) 14, 63, 207, 481, 905
PciSI GCTCTTC 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 908
PdmI GAANNNNTTC 1 cut(s) 537
PkrI GCNGC 3 cut(s) 241, 703, 876
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 926
PspN4I GGNNCC 5 cut(s) 14, 63, 207, 481, 905
PspPI GGNCC 3 cut(s) 12, 47, 62
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 5 cut(s) 232, 449, 556, 649, 838
RsaNI GTAC 5 cut(s) 231, 448, 555, 648, 837
RseI CAYNNNNRTG 1 cut(s) 563
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 3 cut(s) 30, 794, 818
SatI GCNGC 3 cut(s) 240, 702, 875
Sau3AI GATC 3 cut(s) 94, 145, 940
Sau96I GGNCC 3 cut(s) 12, 47, 62
ScaI AGTACT 2 cut(s) 449, 838
SchI GAGTC 1 cut(s) 289
SduI GDGCHC 2 cut(s) 82, 120
SfaNI GCATC 7 cut(s) 78, 116, 360, 778, 814, 844, 939
SinI GGWCC 3 cut(s) 12, 47, 62
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 81, 451
SmoI CTYRAG 2 cut(s) 81, 451
Sse9I AATT 4 cut(s) 27, 537, 744, 878
SsiI CCGC 2 cut(s) 113, 661
SspMI CTAG 1 cut(s) 864
SstI GAGCTC 1 cut(s) 82
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 3 cut(s) 306, 546, 589
TaiI ACGT 1 cut(s) 599
TaqI TCGA 3 cut(s) 313, 748, 760
TasI AATT 4 cut(s) 27, 537, 744, 878
TatI WGTACW 3 cut(s) 447, 647, 836
Tru1I TTAA 3 cut(s) 30, 794, 818
Tru9I TTAA 3 cut(s) 30, 794, 818
TscAI CASTG 2 cut(s) 347, 549
TseI GCWGC 3 cut(s) 239, 701, 874
TspRI CASTG 2 cut(s) 347, 549
VpaK11BI GGWCC 3 cut(s) 12, 47, 62
VspI ATTAAT 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 864
ZrmI AGTACT 2 cut(s) 449, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.