Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001773

Physical Location & Seq

Genomic Coordinates Forward (+)

7963855 .. 7965907

Gene Structure 2053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATTGCTGATGCAGAAGCTAAAGGACTTATTAAACCGGGAGAGAGTGTGTTGATTGAGCCAACAAGTGGGAACACTGGAGTTGGTTTAGCATTTACTGCAGCTGCAAAGGGCTATAAGCTTGTTATAACAATGCCAGCTTCAATGAGTATAGAGAGAAGAATCATTCTCTTAGCTTTTGGAGCTGAGTTGATTCTTACTGATCCGGCTAAAGGTATGAAAGGTGCTGTTGCAAAGGCGGAGGAGATTTTGGCGAAAACACCTAATGGTTATATGCTTCAACAGTTTGAGAATCCTGCTAATCCAAAGATCCATTATGAGACTACTGGACCTGAGATATGGAAAGGTGCTGGGAAGTATCTCAAGGAACAGAACACAAACATAAAGCTGTATGGTGTCGAGCCTGTTGAAAGCCCTATTCTGTCCGGTGGAAAGCCAGGTCCCCACAAAATTCAAGGTATAGGTGCTGGTTTTATTCCAGGCATTTTGGATGTTGATCTTATAGATGAAGTTGTTCAGGTTTCAAGTGAAGAATCCATTGACATGGCAAGGCTTCTTGCTAGGGAAGAGGGTCTGTTAGTGGGAATCTCATCTGGAGCAGCAGCTACTGCAGCAATCAAACTTGCAAAGAGGCCAGAAAATGCTGGGAAGCTTATAGTGGCGGTGTTTCCGAGTTTCGGGGAAAGATATCTATCGACTGTACTGTTTGATGCAGCAAGGAAAGAGGCAGAGACTATGACCTTTGAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

250

Amino Acids

26.46

Weight (kDa)

5.43

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	12 - 188	2.9e-45	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22460 AT4G14880 AT4G14880 AT4G14880 AT4G14880 AT4G14880
fragaria_vesca	FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700
malus_domestica	MD04G1219000.v1.1 MD12G1236000.v1.1 MD13G1193400.v1.1 MD16G1194200.v1.1
prunus_persica	Prupe.1G014000_v2.0.a1 Prupe.6G338400_v2.0.a1 Prupe.6G338400_v2.0.a1
pyrus_communis	pycom04g19440 pycom12g21720 pycom13g16570
rosa_chinensis	RchiOBHm_Chr3g0452241 RchiOBHm_Chr4g0416171
rosa_laevigata	RLG00000008009 RLG00000025614
rosa_multiflora	Rmu_sc0001145.1_g000001 Rmu_sc0010928.1_g000004 Rmu_sc0031164.1_g000006 Rmu_sc0042623.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360030 Rroxscaffold_6G00429370
rosa_rugosa	Rorug02G0639500 Rorug02G0639600 Rorug04G0139300 Rorug04G0139400 Rorug04G0139500
rosa_samantha	Rh3DG042600 Rh4BG199000
rosa_wichuraiana	Rw3G003170 Rw4G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	2 cut(s)	239, 662
AclWI	GGATC	2 cut(s)	197, 304
AcsI	RAATTY	1 cut(s)	450
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	3 cut(s)	68, 212, 677
AgsI	TTSAA	5 cut(s)	144, 281, 410, 455, 525
AjnI	CCWGG	2 cut(s)	436, 478
AluBI	AGCT	9 cut(s)	20, 104, 121, 140, 176, 185, 388, 605, 652
AluI	AGCT	9 cut(s)	20, 104, 121, 140, 176, 185, 388, 605, 652
Alw26I	GTCTC	2 cut(s)	314, 725
AlwI	GGATC	2 cut(s)	197, 304
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	6 cut(s)	101, 104, 599, 602, 611, 713
ApoI	RAATTY	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	513
AspS9I	GGNCC	2 cut(s)	329, 440
AsuC2I	CCSGG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	329, 440
BanII	GRGCYC	1 cut(s)	750
BbvI	GCAGC	6 cut(s)	91, 113, 611, 614, 623, 725
BciT130I	CCWGG	2 cut(s)	438, 480
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	314, 725
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	99, 609
BisI	GCNGC	6 cut(s)	102, 105, 600, 603, 612, 714
BlsI	GCNGC	6 cut(s)	103, 106, 601, 604, 613, 715
Bme1390I	CCNGG	3 cut(s)	39, 438, 480
Bme18I	GGWCC	2 cut(s)	329, 440
BmgT120I	GGNCC	2 cut(s)	329, 440
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	3 cut(s)	39, 438, 480
BmsI	GCATC	1 cut(s)	700
BpmI	CTGGAG	2 cut(s)	99, 615
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	39
BsaBI	GATNNNNATC	2 cut(s)	495, 691
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 212, 677
Bse1I	ACTGG	2 cut(s)	82, 331
Bse8I	GATNNNNATC	2 cut(s)	495, 691
BseBI	CCWGG	2 cut(s)	438, 480
BseGI	GGATG	1 cut(s)	496
BseJI	GATNNNNATC	2 cut(s)	495, 691
BseLI	CCNNNNNNNGG	3 cut(s)	68, 212, 677
BseMII	CTCAG	2 cut(s)	177, 324
BseNI	ACTGG	2 cut(s)	82, 331
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	6 cut(s)	91, 113, 611, 614, 623, 725
BseYI	CCCAGC	2 cut(s)	350, 644
BshFI	GGCC	1 cut(s)	634
BsiSI	CCGG	3 cut(s)	38, 206, 426
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	3 cut(s)	68, 212, 677
BsmAI	GTCTC	2 cut(s)	314, 725
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	3 cut(s)	202, 309, 496
BspACI	CCGC	2 cut(s)	239, 662
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	2 cut(s)	178, 325
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	2 cut(s)	103, 613
BspPI	GGATC	2 cut(s)	197, 304
BsrI	ACTGG	2 cut(s)	82, 331
BssMI	GATC	3 cut(s)	202, 309, 496
Bst2UI	CCWGG	2 cut(s)	438, 480
Bst4CI	ACNGT	3 cut(s)	285, 700, 705
Bst6I	CTCTTC	1 cut(s)	561
BstAPI	GCANNNNNTGC	2 cut(s)	98, 608
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	172, 186, 333
BstF5I	GGATG	1 cut(s)	496
BstKTI	GATC	3 cut(s)	205, 312, 499
BstMAI	GTCTC	2 cut(s)	314, 725
BstMBI	GATC	3 cut(s)	202, 309, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 182, 608, 611
BstNI	CCWGG	2 cut(s)	438, 480
BstSCI	CCNGG	3 cut(s)	37, 436, 478
BstSFI	CTRYAG	2 cut(s)	99, 609
BstV1I	GCAGC	6 cut(s)	91, 113, 611, 614, 623, 725
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	608
Cfr13I	GGNCC	2 cut(s)	329, 440
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	1 cut(s)	544
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	3 cut(s)	172, 186, 333
DpnI	GATC	3 cut(s)	204, 311, 498
DpnII	GATC	3 cut(s)	202, 309, 496
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EciI	GGCGGA	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	750
Eco32I	GATATC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	329, 440
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	436, 478
EcoRV	GATATC	1 cut(s)	689
EcoT38I	GRGCYC	1 cut(s)	750
FaeI	CATG	1 cut(s)	547
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	1 cut(s)	543
Fnu4HI	GCNGC	6 cut(s)	102, 105, 600, 603, 612, 714
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	6 cut(s)	102, 105, 600, 603, 612, 714
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	6 cut(s)	102, 105, 600, 603, 612, 714
GsaI	CCCAGC	2 cut(s)	354, 648
GsuI	CTGGAG	2 cut(s)	99, 615
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	3 cut(s)	38, 206, 426
Hin1II	CATG	1 cut(s)	547
HindIII	AAGCTT	2 cut(s)	119, 650
HinfI	GANTC	5 cut(s)	162, 193, 292, 533, 585
HpaII	CCGG	3 cut(s)	38, 206, 426
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	1 cut(s)	594
HpyCH4III	ACNGT	3 cut(s)	285, 700, 705
HpyCH4V	TGCA	7 cut(s)	14, 101, 107, 233, 611, 626, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 182, 608, 611
HpyF3I	CTNAG	3 cut(s)	172, 186, 333
Hsp92II	CATG	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	202, 309, 496
LmnI	GCTCC	2 cut(s)	182, 596
Lsp1109I	GCAGC	6 cut(s)	91, 113, 611, 614, 623, 725
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	561
MalI	GATC	3 cut(s)	204, 311, 498
MboI	GATC	3 cut(s)	202, 309, 496
MboII	GAAGA	3 cut(s)	171, 542, 578
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	1 cut(s)	450
MnlI	CCTC	4 cut(s)	235, 562, 624, 718
MroXI	GAANNNNTTC	1 cut(s)	513
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	542
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	38, 206, 426
MspR9I	CCNGG	3 cut(s)	39, 438, 480
MvaI	CCWGG	2 cut(s)	438, 480
MwoI	GCNNNNNNNGC	4 cut(s)	98, 182, 608, 611
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	202, 309, 496
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	5 cut(s)	162, 193, 292, 533, 585
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	6 cut(s)	103, 106, 601, 604, 613, 715
PpuMI	RGGWCCY	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	436, 478
PspFI	CCCAGC	2 cut(s)	350, 644
PspGI	CCWGG	2 cut(s)	436, 478
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	2 cut(s)	329, 440
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	2 cut(s)	103, 613
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	6 cut(s)	102, 105, 600, 603, 612, 714
Sau3AI	GATC	3 cut(s)	202, 309, 496
Sau96I	GGNCC	2 cut(s)	329, 440
ScrFI	CCNGG	3 cut(s)	39, 438, 480
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	1 cut(s)	700
SfcI	CTRYAG	2 cut(s)	99, 609
SinI	GGWCC	2 cut(s)	329, 440
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	2 cut(s)	239, 662
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	37, 436, 478
TaaI	ACNGT	3 cut(s)	285, 700, 705
TaqI	TCGA	2 cut(s)	399, 695
TasI	AATT	1 cut(s)	450
TatI	WGTACW	1 cut(s)	700
TfiI	GAWTC	5 cut(s)	162, 193, 292, 533, 585
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	6 cut(s)	101, 104, 599, 602, 611, 713
TspDTI	ATGAA	2 cut(s)	233, 522
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	329, 440
XapI	RAATTY	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.