pycom13g16570

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001773
Physical Location & Seq
Forward (+)
12368582 .. 12370538
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16570.1

Sequence Viewer

Length: 597 bp
ATGAAAGGGGCCGTTCAGAAGGCTGAAGAGATATTGGCAAAGACACCTAACGCCTACATTCTTCAGCAGTTTGAAAATCCTGCCAACCCTAAGATACATTATGAAACGACTGGACCAGAGATATGGGAAGGTTCGGGAGGGAAAGTAGATGCTTTTGTTTCTGGGATAGGCACAGGTGGAACTATAACAGGTGCAGGGAAGTTTCTAAAGGAGAAGAACCCTGACATAAAGCTGTATGGTGTGGAACCAGCTGAAAGTCCAGTCCTAACTGGAGGAAAGCCTGGTGCCCACAAGATCCAAGGAATAGGAGCTGGTTTTATCCCGGGTGTTTTGGAAGTCAATATCATTGATGAAGTTTTTCAAATATCAAGTGATGAAGCAATTGAAACAGCGAAGCTTCTCGCACATAAGGAGGGTTTGCTTGTGGGAATATCATCTGGAGCTGCTGCCGCCGCTGCAATTAAAATTGCAAAGAGACCAGAAAATGCTGGAAAGCTCATTGTTGTGATATTTCCAAGCTTTGGGGAGAGGTATCTCTCCTCTGTCTTGTTTGAGTCCGTGAGACGGGAAGCCGAAAGCATGACTTTCGAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

199

Amino Acids

20.86

Weight (kDa)

5.5

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 3 - 172 3.7e-42 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 521
AciI CCGC 2 cut(s) 450, 453
AclWI GGATC 1 cut(s) 289
AcuI CTGAAG 2 cut(s) 45, 47
AfiI CCNNNNNNNGG 2 cut(s) 521, 564
AgsI TTSAA 3 cut(s) 74, 362, 386
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 7 cut(s) 232, 251, 311, 397, 443, 496, 519
AluI AGCT 7 cut(s) 232, 251, 311, 397, 443, 496, 519
Alw26I GTCTC 2 cut(s) 469, 556
AlwI GGATC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 443, 446, 455
Asp700I GAANNNNTTC 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 9, 113
AsuC2I CCSGG 2 cut(s) 323, 324
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 594
BbvI GCAGC 3 cut(s) 430, 433, 442
BcgI CGANNNNNNTGC 1 cut(s) 568
BciT130I CCWGG 1 cut(s) 282
BcnI CCSGG 2 cut(s) 323, 324
BcoDI GTCTC 2 cut(s) 469, 556
BisI GCNGC 5 cut(s) 444, 447, 450, 453, 456
BlsI GCNGC 5 cut(s) 445, 448, 451, 454, 457
Bme1390I CCNGG 3 cut(s) 282, 323, 324
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 9, 113
BmiI GGNNCC 3 cut(s) 10, 246, 286
BmrFI CCNGG 3 cut(s) 282, 323, 324
BmsI GCATC 1 cut(s) 139
BpmI CTGGAG 2 cut(s) 291, 459
BpuMI CCSGG 2 cut(s) 323, 324
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 298, 322
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 564
Bse1I ACTGG 3 cut(s) 115, 260, 274
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 298, 322
BseLI CCNNNNNNNGG 2 cut(s) 521, 564
BseNI ACTGG 3 cut(s) 115, 260, 274
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 3 cut(s) 430, 433, 442
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 521, 564
BsmAI GTCTC 2 cut(s) 469, 556
BsmBI CGTCTC 1 cut(s) 556
BsnI GGCC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 289, 594
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 2 cut(s) 450, 453
BspANI GGCC 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 10, 246, 286
BspPI GGATC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 469
BsrI ACTGG 3 cut(s) 115, 260, 274
BssECI CCNNGG 2 cut(s) 298, 322
BssMI GATC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 90
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 2 cut(s) 469, 556
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 3 cut(s) 449, 452, 455
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 3 cut(s) 280, 321, 322
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 430, 433, 442
BstX2I RGATCY 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 123
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 9, 113
Cfr9I CCCGGG 1 cut(s) 322
CviAII CATG 1 cut(s) 580
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 45, 47
Eco88I CYCGRG 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 1 cut(s) 583
FaiI YATR 7 cut(s) 102, 124, 185, 227, 237, 408, 581
FalI AAGNNNNNCTT 1 cut(s) 568
FatI CATG 1 cut(s) 579
Fnu4HI GCNGC 5 cut(s) 444, 447, 450, 453, 456
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 5 cut(s) 444, 447, 450, 453, 456
GluI GCNGC 5 cut(s) 444, 447, 450, 453, 456
GsuI CTGGAG 2 cut(s) 291, 459
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 323
Hin1II CATG 1 cut(s) 583
HindIII AAGCTT 2 cut(s) 395, 517
HinfI GANTC 1 cut(s) 554
HpaII CCGG 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 2 cut(s) 135, 438
HpyAV CCTTC 2 cut(s) 13, 122
HpyCH4V TGCA 3 cut(s) 194, 458, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 452, 455
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 583
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 308, 440
Lsp1109I GCAGC 3 cut(s) 430, 433, 442
LweI GCATC 1 cut(s) 139
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 3 cut(s) 38, 53, 226
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 2 cut(s) 289, 594
MluCI AATT 3 cut(s) 381, 459, 465
MlyI GAGTC 1 cut(s) 563
MnlI CCTC 5 cut(s) 131, 266, 406, 522, 550
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 2 cut(s) 251, 455
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 282, 323, 324
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 449, 452, 455
NciI CCSGG 2 cut(s) 323, 324
NdeII GATC 1 cut(s) 294
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 3 cut(s) 10, 246, 286
PdmI GAANNNNTTC 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 5 cut(s) 445, 448, 451, 454, 457
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 10, 246, 286
PspPI GGNCC 2 cut(s) 9, 113
PsuI RGATCY 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 5 cut(s) 444, 447, 450, 453, 456
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 9, 113
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 3 cut(s) 282, 323, 324
SduI GDGCHC 2 cut(s) 289, 594
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 113
SmaI CCCGGG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 503
Sse9I AATT 3 cut(s) 381, 459, 465
SsiI CCGC 2 cut(s) 450, 453
StyD4I CCNGG 3 cut(s) 280, 321, 322
StyI CCWWGG 1 cut(s) 298
TaqI TCGA 1 cut(s) 588
TasI AATT 3 cut(s) 381, 459, 465
TauI GCSGC 2 cut(s) 452, 455
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseI GCWGC 3 cut(s) 443, 446, 455
TspDTI ATGAA 4 cut(s) 17, 117, 366, 390
TspGWI ACGGA 1 cut(s) 547
TspMI CCCGGG 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 113
XmaI CCCGGG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.